4 results
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2. A novel polymerase chain reaction method for detection of human immunodeficiency virus in dried blood spots on filter paper.
- Author
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Yourno J and Conroy J
- Subjects
- Base Sequence, Blood Specimen Collection, Child, Child, Preschool, DNA, Viral blood, DNA, Viral genetics, Evaluation Studies as Topic, Genes, gag, HIV Infections blood, HIV Infections microbiology, Humans, Infant, Infant, Newborn, Molecular Sequence Data, Paper, Polymerase Chain Reaction standards, Reference Standards, HIV genetics, HIV isolation & purification, HIV Infections diagnosis, Polymerase Chain Reaction methods
- Abstract
A method for detection of proviral human immunodeficiency virus DNA in dried blood spots on filter paper by direct polymerase chain reaction (PCR) has been developed. To develop the method, a standard system was used which was prepared from cells each containing a single integrated provirus and titrated with normal donor blood. This rapid procedure provides virtually quantitative yields of nuclear DNA and exploits most of the standard methodology described for blood specimens. A nested PCR using SK38-SK39 gag as the internal primer pair was also designed; this PCR detected a single copy of provirus per filter at near theoretical frequency with SK19 probe. The utility of the procedure was demonstrated with clinical specimens. Blood spot filters from human immunodeficiency virus-infected and uninfected individuals were readily and unequivocally discriminated. The method is designed for ultimate use with large (1.5-ml) sample preparation tubes that are compatible as PCR tubes with thermal cyclers. This will permit convenient, direct single-tube PCR of dried blood specimens on filters. It should be adaptable to analysis of dried blood spots for a variety of infectious or genetic diseases.
- Published
- 1992
- Full Text
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3. Separation of Plasma from Whole Blood by Use of the cobas Plasma Separation Card: a Compelling Alternative to Dried Blood Spots for Quantification of HIV-1 Viral Load
- Author
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Dieketseng Magubane, Sergio Carmona, Lucia Hans, Britta Seiverth, and Matthias Hoppler
- Subjects
Adult ,Paper ,Microbiology (medical) ,filter paper cards ,Human immunodeficiency virus (HIV) ,HIV Infections ,medicine.disease_cause ,Sensitivity and Specificity ,Specimen Handling ,Plasma ,Limit of Detection ,Virology ,Blood plasma ,medicine ,Humans ,HIV patient monitoring ,Whole blood ,Detection limit ,Blood Specimen Collection ,Venipuncture ,Chromatography ,Spots ,Chemistry ,Temperature ,HIV ,cobas ,Viral Load ,dried blood spots ,HIV-1 ,RNA, Viral ,Dried Blood Spot Testing ,Sample collection ,plasma separation card ,Viral load ,Filtration - Abstract
Plasma HIV viral load testing is the preferred means of monitoring antiretroviral treatment response. Dried blood spots (DBSs) hold considerable logistical advantages over EDTA samples, but they more frequently misclassify virological failure and have higher limits of detection (LoD)., Plasma HIV viral load testing is the preferred means of monitoring antiretroviral treatment response. Dried blood spots (DBSs) hold considerable logistical advantages over EDTA samples, but they more frequently misclassify virological failure and have higher limits of detection (LoD). Plasma separation cards (PSCs) may overcome these limitations. Health workers collected EDTA whole blood by venipuncture and 140 μl of finger-prick blood by capillary tube from 53 HIV-infected adults. Capillary blood was immediately transferred to PSCs. Additionally, 432 EDTA samples from HIV-infected adults were spotted onto PSCs and analyzed together with the finger-prick samples. Specificity and sensitivity of PSC with paired EDTA-PSC samples tested on a cobas 6800/8800 system with the cobas HIV-1 test (cobas HIV) was determined. LoD (3rd HIV-1 WHO International Standard) and stability at a range of temperatures and storage durations was determined using cobas HIV and cobas AmpliPrep/cobas TaqMan HIV-1 test v2.0 (CAP/CTM). Of 132 specimens with quantitative values for paired EDTA-PSC samples, the mean log10 difference between samples was 0.05 copies/ml (95% confidence interval [CI], −0.01 to 0.11). The LoD for cobas HIV was 790.2 copies/ml and for CAP/CTM was 737.9 copies/ml. At 1,000 copies/ml, PSC sensitivity was 97.0% (128/132) and specificity was 97.2% (343/353). Results correlated well with those from EDTA samples (Deming R2 = 0.90). PSC results were unaffected by temperature and storage conditions. PSC samples correlate well with plasma viral load and have adequate sensitivity and specificity. The improved performance may be as a result of a reduction in contribution from cell-associated viral nucleic acids. The card provides an alternative sample collection technology to DBSs.
- Published
- 2019
- Full Text
- View/download PDF
4. Stability of dried blood spot specimens for detection of human immunodeficiency virus DNA by polymerase chain reaction
- Author
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M. Montpetit, C T Sy, S Cassol, T. Salas, Michael V. O'Shaughnessy, Michael Gill, and J Rudnik
- Subjects
Paper ,Microbiology (medical) ,HIV Infections ,Biology ,Polymerase Chain Reaction ,Virus ,law.invention ,chemistry.chemical_compound ,Pregnancy ,law ,Humans ,Polymerase chain reaction ,Whole blood ,Blood Specimen Collection ,Infant, Newborn ,Provirus ,Virology ,Dried blood spot ,chemistry ,Evaluation Studies as Topic ,DNA, Viral ,HIV-1 ,Human Immunodeficiency Virus DNA ,Female ,DNA ,Research Article ,Blood sampling - Abstract
Blood sampling on filter paper has many advantages for the detection of perinatal human immunodeficiency virus (HIV) infection by the polymerase chain reaction (PCR). However, if the method is to be widely used, an assessment of its performance under field conditions is required. To simulate conditions in the field, 50-microliters aliquots of whole blood containing low levels of HIV proviral DNA (4 to 1,024 copies per 100,000 nucleated cells) were spotted onto filter paper; dried; and subjected to heat, humidity, and prolonged storage at room temperature. After exposure, the DNA was recovered and amplified with primers to human leukocyte antigen DQ alpha- and HIV-specific sequences. Treatment at 37 degrees C and 60% humidity for 7 days, storage for 12 weeks at 22 degrees C, and freeze-thawing twice had no adverse effect on PCR reactivity when compared with the results obtained with reference spots stored at -20 degrees C. The lower limits of HIV detection in all tests ranged from 4 to 16 HIV copies per 100,000 cells. Fixation in 70% ethanol improved the amplification of low levels of HIV DNA and reduced biohazard risks. These findings suggest that dried blood spots will provide a powerful new resource for testing for HIV by PCR, especially in remote areas where refrigeration and immediate sample processing are unavailable.
- Published
- 1992
- Full Text
- View/download PDF
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