1. Plasma proteome landscape and impact of the circulatory proteome on clinical outcomes in metastatic prostate cancer
- Author
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Manish Kohli, Hyejung Lee, Tengda Lin, Matt Larsen, Claire Hanson, Anna Neibling, Sumati Gupta, Jennifer Lloyd, Benjamin L. Maughan, Skyler B Johnson, Neeraj Agarwal, Jonathan David Tward, Umang Swami, Brock ONeil, Christopher B. Dechet, Liang Wang, Aikchoon Tan, and Ben Haaland
- Subjects
Cancer Research ,Oncology - Abstract
237 Background: We performed plasma-based high-plex proteomic profiling for identifying classifiers of clinical outcomes in metastatic prostate cancer (PC). Olink Explore NGS-based proteome profiling platform was used for high-precision analysis of 736 cancer associated plasma proteins in plasma samples from non-metastatic stage prostate cancer (PC), metastatic hormone-sensitive PC (mHSPC) and metastatic castrate resistant PC (mCRPC) states. Methods: Plasma was collected prospectively in a cohort of 108 PC patients (24 with non-metastatic PC; 28 mHSPC; 56 mCRPC of which 37 patients were collected before starting any mCRPC treatments). Proteomic data were generated with Proximity Extension Assay (PEA) on the Olink platform from 100 µL plasma per sample. Levels of 736 cancer-associated protein assays were denoted as normalized protein expression (NPX) units through a QC and normalization process developed and provided by Olink. Data generation of NPX consists of normalization to the extension control, log2 -transformation, and level adjustment using the plate control (plasma sample). Temporal trends of differentially expressed assays in non-metastatic PC, mHSPC and mCRPC states were identified using linear mixed effects model (FDR with Benjamini-Hochberg (BH) adjustment; q-value
- Published
- 2023
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