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The cell energy fraction that powered maintenance and expression of genes encoding pro-phage elements, pta- ack cluster, early sporulation, sugar ABC transporter periplasmic proteins, 6-phosphofructokinase, pyruvate kinase, and fructose-1,6-disphosphatase in acetogen Clostridium sp. MT871 was re-directed to power synthetic operon encoding isobutanol biosynthesis at the expense of these genes achieved via their elimination. Genome tailoring decreased cell duplication time by 7.0 ± 0.1 min ( p < 0.05) compared to the parental strain, with intact genome and cell duplication time of 68 ± 1 min ( p < 0.05). Clostridium sp. MT871 with tailored genome was UVC-mutated to withstand 6.1 % isobutanol in fermentation broth to prevent product inhibition in an engineered commercial biocatalyst producing 5 % (674.5 mM) isobutanol during two-step continuous fermentation of CO/H gas blend. Biocatalyst Clostridium sp. MT871RGIB6 was engineered to express six copies of synthetic operon comprising optimized synthetic format dehydrogenase, pyruvate formate lyase, acetolactate synthase, acetohydroxyacid reductoisomerase, 2,3-dihydroxy-isovalerate dehydratase, branched-chain alpha-ketoacid decarboxylase gene, aldehyde dehydrogenase, and alcohol dehydrogenase, regaining cell duplication time of 68 ± 1 min ( p < 0.05) for the parental strain. This is the first report on isobutanol production by an engineered acetogen biocatalyst suitable for commercial manufacturing of this chemical/fuel using continuous fermentation of CO/H blend thus contributing to the reversal of global warming. [ABSTRACT FROM AUTHOR]

A time- and cost-efficient two-step gene elimination procedure was used for acetogen Clostridium sp. MT1834 capable of fermenting CO/H blend to 245 mM acetate ( p < 0.005). The first step rendered the targeted gene replacement without affecting the total genome size. We replaced the acetate pta- ack cluster with synthetic bi-functional acetaldehyde-alcohol dehydrogenase ( al- adh). Replacement of pta- ack with al- adh rendered initiation of 243 mM ethanol accumulation at the expense of acetate production during CO/H blend continuous fermentation ( p < 0.005). At the second step, al- adh was eliminated to reduce the genome size. Resulting recombinants accumulated 25 mM mevalonate in fermentation broth ( p < 0.005). Cell duplication time for recombinants with reduced genome size decreased by 9.5 % compared to Clostridium sp. MT1834 strain under the same fermentation conditions suggesting better cell energy pool management in the absence of the ack- pta gene cluster in the engineered biocatalyst. If the first gene elimination step was used alone for spo0A gene replacement with two copies of synthetic formate dehydrogenase in recombinants with a shortened genome, mevalonate production was replaced with 76.5 mM formate production in a single step continuous CO/H blend fermentation ( p < 0.005) with cell duplication time almost nearing that of the wild strain. [ABSTRACT FROM AUTHOR]