1. A European multicentre evaluation of detection and typing methods for human enteroviruses and parechoviruses using RNA transcripts
- Author
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Elke Wollants, Manasi Majumdar, M. Smith, Natasa Berginc, Anna Papa, F. X. Lopez-Labrador, Kimberley S. M. Benschop, Laura Pellegrinelli, Jean-Luc Bailly, Jennifer L. Dembinski, Johan Richter, Sami Oikarinen, Andrés Antón, Thea Kølsen Fischer, Anne J. Jääskeläinen, Dung Nguyen, Audrey Mirand, Ursula Morley, Martin Andersson, Melanie Maier, Barry Vipond, Sabine Diedrich, G. J. A. Eltringham, H. C. Howson-Wells, D. Davis, Emma J. A. Cunningham, Kate Templeton, S. Gonzales-Goggia, Susanne Gjeruldsen Dudman, Christopher B. Williams, Sofie Midgley, Svein Arne Nordbø, Nuria Rabella, A. Soderlund Strand, Rory Gunson, H. Osman, Peter Simmonds, Stuart Beard, Katherina Zakikhany, A. Hayes, Heli Harvala, Antonio Piralla, Tytti Vuorinen, Robert Dyrdak, Soile Blomqvist, Laboratoire Microorganismes : Génome et Environnement (LMGE), Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre National de la Recherche Scientifique (CNRS), Medicum, HUSLAB, Staff Services, Viral Zoonosis Research Unit, and Department of Virology
- Subjects
Echovirus ,Gene Dosage ,DIVERSITY ,CHILDREN ,medicine.disease_cause ,law.invention ,0302 clinical medicine ,law ,EPIDEMIOLOGY ,030212 general & internal medicine ,Research Articles ,ComputingMilieux_MISCELLANEOUS ,Polymerase chain reaction ,enterovirus ,enterovirus A71 ,11832 Microbiology and virology ,RNA transcripts ,[SDE.IE]Environmental Sciences/Environmental Engineering ,Human parechovirus ,CLINICAL-SAMPLES ,ASSOCIATION ,Meningitis, Viral ,3. Good health ,Europe ,PCR ,Infectious Diseases ,INFECTIONS ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,RNA, Viral ,030211 gastroenterology & hepatology ,Life Sciences & Biomedicine ,Viral load ,Research Article ,[SDE.MCG]Environmental Sciences/Global Changes ,Biology ,Real-Time Polymerase Chain Reaction ,Sensitivity and Specificity ,PANEL ,03 medical and health sciences ,CEREBROSPINAL-FLUID ,Virology ,Enterovirus Infections ,medicine ,Humans ,RHINOVIRUS ,Typing ,parechovirus ,Science & Technology ,Picornaviridae Infections ,Reproducibility of Results ,Gold standard (test) ,biology.organism_classification ,[SDE.ES]Environmental Sciences/Environmental and Society ,Molecular Typing ,Parechovirus ,Enterovirus ,Reagent Kits, Diagnostic ,[SDE.BE]Environmental Sciences/Biodiversity and Ecology - Abstract
Polymerase chain reaction (PCR) detection has become the gold standard for diagnosis and typing of enterovirus (EV) and human parechovirus (HPeV) infections. Its effectiveness depends critically on using the appropriate sample types and high assay sensitivity as viral loads in cerebrospinal fluid samples from meningitis and sepsis clinical presentation can be extremely low. This study evaluated the sensitivity and specificity of currently used commercial and in‐house diagnostic and typing assays. Accurately quantified RNA transcript controls were distributed to 27 diagnostic and 12 reference laboratories in 17 European countries for blinded testing. Transcripts represented the four human EV species (EV‐A71, echovirus 30, coxsackie A virus 21, and EV‐D68), HPeV3, and specificity controls. Reported results from 48 in‐house and 15 commercial assays showed 98% detection frequencies of high copy (1000 RNA copies/5 µL) transcripts. In‐house assays showed significantly greater detection frequencies of the low copy (10 copies/5 µL) EV and HPeV transcripts (81% and 86%, respectively) compared with commercial assays (56%, 50%; P = 7 × 10−5). EV‐specific PCRs showed low cross‐reactivity with human rhinovirus C (3 of 42 tests) and infrequent positivity in the negative control (2 of 63 tests). Most or all high copy EV and HPeV controls were successfully typed (88%, 100%) by reference laboratories, but showed reduced effectiveness for low copy controls (41%, 67%). Stabilized RNA transcripts provide an effective, logistically simple and inexpensive reagent for evaluation of diagnostic assay performance. The study provides reassurance of the performance of the many in‐house assay formats used across Europe. However, it identified often substantially reduced sensitivities of commercial assays often used as point‐of‐care tests. © 2019 The Authors. Journal of Medical Virology published by Wiley Periodicals, Inc. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
- Published
- 2020