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Reservoir quality is the key parameter controlling shale oil enrichment. However, the complicated lithofacies, which control diagenesis, result in reservoir heterogeneity in the shale strata, creating challenges for reservoir prediction. Combining with the detail analysis of inorganic and organic geochemistry, characteristics of the main lithofacies and diagenetic alteration were investigated in Permian Lucaogou Formation, Jimusar sag, Junggar Basin. Laminated rocks with laminae combinations containing pyroclastic and terrigenous clastic laminae, terrigenous clastic and dolomite laminae, and pyroclastic and carbonate laminae were identified. Massive rocks mainly includes dolomicrite, dolomitic tuff, silt dolostone, dolomitic siltstone, and tuffaceous siltstone. Feldspar dissolution and carbonate cementation were the two dominant diagenetic types, further causing heterogeneity of the shale oil reservoirs. Feldspar dissolution generally occurred in laminated rocks containing pyroclastic laminae with low content of carbonate minerals (PL1), as well as in their adjacent interbedded siltstones. Carbonate cementation generally occurred in laminated rocks containing carbonate laminae, as well as in their adjacent interbedded siltstones. Whether in laminated and massive rocks, sparry carbonate crystals were also precipitated adjacent to organic matter and in microfractures. In the burial processes, enriched transition metal elements of V and Ti in pyroclastic laminae promote catalytic pyrolysis of organic matter. Abundant CO 2 produced during the catalytic pyrolysis promoted feldspar dissolution. Dissolution of sedimentary carbonate minerals by organic acids and CO 2 provided the material sources for secondary carbonate cements. It promoted the recrystallization and re-precipitation of sparry carbonate crystals adjacent to organic matter and in the terrigenous clastic laminae or interbedded siltstones. Ca2+, Mg2+ Sr2+, Fe2+, and Mn2+ produced by the transformation of smectite to illite in the pyroclastic laminae also provided Ca source for secondary carbonate cements. External diagenetic fluids providing materials along microfractures is another genesis of carbonate cements in the Permian Lucaogou Formation. • Petrographic features in the shale strata in Permian Lucaogou Formation were identified based on in situ analytical method. • Differential feldspar dissolution and carbonate precipitation generally occurred in different lithofacies. • Catalytic pyrolysis of organic matter in presence of transition metal elements in pyroclastic laminae promoted dissolution. • Development of carbonate cements in the shale strata were mainly provided by three material sources. [ABSTRACT FROM AUTHOR]