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Contribution of latitude, distance offshore and environmental factors to variations in zooplankton assemblages across the Northeast Atlantic Shelves Province, from the Bay of Biscay [Bilbao 35 (B35) and Urdaibai 35 (U35)] to the English Channel (Plymouth L4; L4) and the North Sea (Stonehaven; SH), were assessed mainly by redundancy analysis. For coarse zooplankton groups latitude explained the main between-site differences, and meroplankton contributed more than holoplankton. Latitudinal differences were best indicated by contrasting abundances of cirripede larvae and doliolids (most abundant at the lowest latitude sites) and bryozoan and polychaete larvae (most abundant at the highest latitude site). Doliolids were best indicators of temperature-mediated latitudinal differences. The interaction between latitude and distance offshore or salinity and phytoplankton biomass explained smaller percentages of the variability. The main differences in copepod and cladoceran genera reflected the oceanic influence, with highest presence of Corycaeus and Oncaea at L4, likely related to the higher influence of off-shelf water intrusions, and neritic Acartia dominating at SH, U35 and B35. Podon and Evadne, which decreased from south to north, reflected latitude-related differences driven more by salinity than by temperature. Instances where a single species (e.g. Acartia clausi) dominated showed common relationships with temperature, consistent with a common thermal niche. Differences in co-generic species dominance between sites depicted the latitudinal gradient.

Zooplankton abundance series (1999–2013) from the coastal sites of Bilbao 35 (B35), Urdaibai 35 (U35), Plymouth L4 (L4) and Stonehaven (SH), in the Northeast Atlantic were compared to assess differences in the magnitude of seasonal, interannual and residual scales of variability, and in patterns of seasonal and interannual variation in relation to latitudinal location and trophic status. Results showed highest seasonal variability at SH consistent with its northernmost location, highest interannual variability at U35 associated to an atypical event identified in 2012 in the Bay of Biscay, and highest residual variability at U35 and B35 likely related to lower sampling frequency and higher natural and anthropogenic stress. Interannual zooplankton variations were not coherent across sites, suggesting the dominance of local influences over large scale environmental drivers. For most taxa the seasonal pattern showed coherent differences across sites, the northward delay of the annual peak being the most common feature. The between-site seasonal differences in spring–summer zooplankton taxa were related mainly to phytoplankton biomass, in turn, related to differences in latitude or anthropogenic nutrient enrichment. The northward delay in water cooling likely accounted for between-site seasonal differences in taxa that increase in the second half of the year.

Variations in mesozooplankton abundance and community structure in response to water quality improvement and to variations in hydro-climatic conditions were studied in the inner estuary of Bilbao from 1998 to 2011. A process of recolonization was observed with a marked increase in copepod abundance and a smaller increase in the abundances of appendicularians, meroplanktonic bivalves and gastropods, at the expense of the decrease in groups of gelatinous predators. Within the copepods, an initial phase in this recolonization occurred through an increase in neritic copepods. However, in a second phase, the non-indigenous species Acartia tonsa and Oithona davisae increased and became dominant. In the last 2 years, a third non-indigenous species Pseudodiaptomus marinus was observed in lower densities, and Calanipeda aquaedulcis abundance increased becoming co-dominant with A. tonsa. All non-indigenous copepod species had summer/autumn peaks and were characteristic of brackish conditions, which suggests that unsaturated ecological niches in brackish waters were important for the settlement of non-indigenous species. Pollution abatement allowed for zooplankton recolonization, but variations in community structure, both at the broad taxonomic group and at the copepod species level, were greatly influenced by hydro-climatic factors, temperature being the single best explanatory variable of zooplankton variations.

This study is a part of the zooplankton monitoring program carried out in the euhaline region of the estuaries of Bilbao and Urdaibai (Basque coast, Bay of Biscay), and analyses between-estuaries differences in zooplankton spatial and temporal patterns in relation to environmental conditions between July 1999 and May 2001. Environmental variables measured were water temperature, dissolved oxygen saturation (DOS), Secchi disk depth (SDD) and chlorophyll a. Relationships between zooplankton community and environmental variables were analysed using canonical correspondence analysis; between-estuaries differences in environmental conditions and distribution of zooplankton taxa in relation to salinity were tested using Mann― Whitney U-test. Spatial differentiation of the zooplankton community was higher in the estuary of Bilbao, with the relative abundance of most of the taxa decreasing more pronouncedly towards the upstream estuary than in the Urdaibai related to significantly lower values of DOS and SDD, reflecting the higher degree of pollution, in the Bilbao estuary. However, the successful establishment of the Acartia discaudata and A. margalefi populations, and the first records of another Acartia species, Calanipeda aquaedulcis and Eurytemora affinis in the Bilbao estuary, along with the increasing similarity between zooplankton assemblages of the Bilbao and Urdaibai estuaries in relation to the period 1997―1999, represent a new step in the recovery of the zooplankton community in the estuary of Bilbao responding to the improvement of water quality.

The relationships between chlorophyll a concentration and environmental (climatic and associated hydrographical) factors were investigated in the estuary of Urdaibai (Bay of Biscay) in different salinity zones of the euhaline region, using time-series for the period 1997–2006. Transfer function (TF) models were used on quarterly data (3 month mean values) to establish possible relationships between time-series. In the non-nutrient limited waters with salinities of 30 and 33 PSU, a chain of effects from the North Atlantic Oscillation (NAO) to chlorophyll a was established, where air temperature followed inversely the NAO index, water temperature followed air temperature and chlorophyll a followed water temperature. Each of the steps occurred with a lag of 0 (within the 3 month period); however, the effect from NAO to chlorophyll a showed a lag of 1 (a mean of 3 months delay). Consistent with this result, annual mean chlorophyll a biomass in the 30 and 33 PSU salinity zones showed a significant positive relationship with annual mean water temperature and a significant negative relationship with the 12 month mean NAO index from October of the previous year to September. In the 35 PSU salinity zone, no significant relationship between chlorophyll a and NAO or water temperature was observed. It is suggested that nutrient limitation distorts the effect of temperature on phytoplankton biomass enhancement in the outer estuary (35 PSU salinity zone).

The abundance and spatial distribution of copepod species were compared in the euhaline region of the polluted estuary of Bilbao [mean biological oxygen demand (BOD): 49748.05 kg day -1 in 1996] and the unperturbed estuary of Urdaibai. Sampling was performed at fixed salinity sites, where data of temperature, dissolved oxygen saturation, particulate organic matter, Secchi disk depth and chlorophyll were also obtained. Differences between the estuaries and within the estuaries for environmental variables and copepod abundances were tested statistically. The dominant species Acartia clausi and Paracalanus parvus differed significantly in abundance between estuaries, and most of nerilic species diminished more drastically with decreasing salinity in Bilbao by the effect of pollution. The different responses observed among species in relation to pollution and water desalination are discussed. The lack of the brackish-water species in Bilbao indicated that water quality worsening upward the estuary of Bilbao not only limited the penetration of neritic species but also prevented the development of autochthonous estuarine species. At the outer euhaline region of Bilbao, however, pollution was found to be low enough to enhance the development of tolerant neritic species that are favoured under moderate pollution conditions. Results indicate that comparisons of copepod abundances and distributions with salinity in estuaries may he a useful tool to evaluate the health of the different estuarine pelagic habitats.