Search

The electrical bistability behavior of 2,3-dichloro-5,6-dicyano-1,4-benzoquinone (DDQ) along with two additional benzoquinone derivatives (TCQ and TCN) and pentacene (PNT) is investigated by computing intra- and intermolecular charge transfer parameters and by comparing the efficiency of bulk charge transport and charge injection at the electrode/organic interface in the presence of neutral and charged molecular species. The bulk charge transport is modeled assuming a charge hopping regime and by computing hopping rates and mobilities. Molecular dynamics simulations are carried out to estimate the effect of thermal disorder on charge transfer integrals. The efficiency of the interface transport is estimated by comparing the electron affinities of benzoquinone derivatives and the ionization potential of pentacene with the work function of commonly employed electrodes. It is shown that the observed memory effect can be rationalized in terms of an interplay of the two transport mechanisms by showing that the OFF state is dominated by interface limited phenomena and the ON state may be determined also by bulk transport limited phenomena. While the contribution of collective effects cannot be ruled out for the macroscopic memory phenomenon, we show that, at a molecular level, sizable intramolecular reorganization energies are fundamental for the efficiency of the device, provided their magnitude does not hamper the charge transport across the device. It is suggested that control over molecular parameters might be exploited to design more efficient resistive molecular memories.

Hybrid QM(CASPT2//CASSCF/6-31G*)/MM(Amber) computations have been used to map the photoisomerization path of the retinal chromophore in Rhodopsin and explore the reasons behind the photoactivity efficiency and spectral control in the visual pigments. It is shown that while the electrostatic environment plays a central role in properly tuning the optical properties of the chromophore, it is also critical in biasing the ultrafast photochemical event: it controls the slope of the photoisomerization channel as well as the accessibility of the S(1)/S(0) crossing space triggering the ultrafast decay. The roles of the E113 counterion, the E181 residue, and the other amino acids of the protein pocket are explicitly analyzed: it appears that counterion quenching by the protein environment plays a key role in setting up the chromophore's optical properties and its photochemical efficiency. A unified scenario is presented that discloses the relationship between spectroscopic and mechanistic properties in rhodopsins and allows us to draw a solid mechanism for spectral tuning in color vision pigments: a tunable counterion shielding appears as the elective mechanism for L<-->M spectral modulation, while a retinal conformational control must dictate S absorption. Finally, it is suggested that this model may contribute to shed new light into mutations-related vision deficiencies that opens innovative perspectives for experimental biomolecular investigations in this field.

Azobenzene E<==>Z photoisomerization, following excitation to the bright S(pi pi*) state, is investigated by means of ab initio CASSCF optimizations and perturbative CASPT2 corrections. Specifically, by elucidating the S(pi pi*) deactivation paths, we explain the mechanism responsible for azobenzene photoisomerization, the lower isomerization quantum yields observed for the S(pi pi*) excitation than for the S1(n pi*) excitation in the isolated molecule, and the recovery of the Kasha rule observed in sterically hindered azobenzenes. We find that a doubly excited state is a photoreaction intermediate that plays a very important role in the decay of the bright S(pi pi*). We show that this doubly excited state, which is immediately populated by molecules excited to S(pi pi*), drives the photoisomerization along the torsion path and also induces a fast internal conversion to the S1(n pi*) at a variety of geometries, thus shaping (all the most important features of) the S(pi pi*) decay pathway and photoreactivity. We reach this conclusion by determining the critical structures, the minimum energy paths originating on the bright S(pi pi*) state and on other relevant excited states including S1(n pi*), and by characterizing the conical intersection seams that are important in deciding the photochemical outcome. The model is consistent with the most recent time-resolved spectroscopic and photochemical data.

Vibrational activities in the Raman and resonance Raman spectra of the cationic, neutral, and anionic forms of 4'-hydroxybenzylidene-2,3-dimethyl-imidazolinone, a model compound for the green fluorescent protein chromophore, have been obtained from quantum-chemical calculations in vacuo and with the inclusion of solvent effects through the polarizable continuum model. It is found that inclusion of solvent effects improves slightly the agreement with experimental data for the cationic and neutral forms, whose spectra are qualitatively well-described already by calculations in vacuo. In contrast, inclusion of solvent effects is crucial to reproduce correctly the activities of the anionic form. The structural effects of solvation are remarkable both in the ground and in the lowest excited state of the anionic chromophore and influence not only the vibrational activity but also the photodynamics of the lowest excited state. CASPT2//CASSCF photoreaction paths, computed by including solvent effects at the CASSCF level, indicate a facile torsional deformation around both exocyclic CC bonds. Rotation around the exocyclic CC double bond is shown to lead to a favored radiationless decay channel, more efficient than that in gas phase, and which explains the ultrafast fluorescence decay and ground-state recovery observed in solution. Conversely, rotation around the exocyclic CC single bond accounts for the bottleneck observed in the ground-state recovery cycle. It is also speculated that the ultrafast radiationless decay channel would be hampered in protein for unfavorable electrostatic interactions and steric reasons.

In this paper, we identify the most efficient decay and isomerization route of the S(1), T(1), and S(0) states of azobenzene. By use of quantum chemical methods, we have searched for the transition states (TS) on the S(1) potential energy surface and for the S(0)/S(1) conical intersections (CIs) that are closer to the minimum energy path on the S(1). We found only one TS, at 60 degrees of CNNC torsion from the E isomer, which requires an activation energy of only 2 kcal/mol. The lowest energy CIs, lying also 2 kcal/mol above the S(1) minimum, were found on the torsion pathway for CNNC angles in the range 95-90 degrees. The lowest CI along the inversion path was found ca. 25 kcal/mol higher than the S(1) minimum and was characterized by a highly asymmetric molecular structure with one NNC angle of 174 degrees. These results indicate that the S(1) state decay involves mainly the torsion route and that the inversion mechanism may play a role only if the molecule is excited with an excess energy of at least 25 kcal/mol with respect to the S(1) minimum of the E isomer. We have calculated the spin-orbit couplings between S(0) and T(1) at several geometries along the CNNC torsion coordinate. These spin-orbit couplings were about 20-30 cm(-)(1) for all the geometries considered. Since the potential energy curves of S(0) and T(1) cross in the region of twisted CNNC angle, these couplings are large enough to ensure that the T(1) lifetime is very short ( approximately 10 ps) and that thermal isomerization can proceed via the nonadiabatic torsion route involving the S(0)-T(1)-S(0) crossing with preexponential factor and activation energy in agreement with the values obtained from kinetic measures.