77 results on '"Peng, Chen"'
Search Results
2. Photocatalytic CH4-to-Ethanol Conversion on Asymmetric Multishelled Interfaces
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Hao, Shuya, Xue, Yuanyuan, Peng, Chen, Mi, Yuying, Yan, Yaqin, Wang, Maoyin, Han, Qing, and Zheng, Gengfeng
- Abstract
The selective oxidation of methane (CH4) features attractive potentials in both mitigating global warming and producing value-added chemicals. However, due to the short-life and unpaired concentrations of reactive intermediates (such as ·OH, ·CH3, and CO), the selective formation of multicarbon products like ethanol has remained challenging. In this work, we developed a hollow multishelled CeO2@PdO@FeOxnanosphere catalyst with two asymmetric and closely connected interfaces, featuring efficient in-tandem photo-oxidation of CH4into ethanol with O2as the oxidant. The outer FeOxsurface promotes the photoreduction of the oxazole atoms in O2. In the meantime, the two asymmetric PdO/FeOxand CeO2/PdO catalytic interfaces enable selective photoactivation of CH4to ·CH3and then to CO, respectively, and the hollow multishelled structure further facilitates the directional transport and coupling of the as-generated ·CH3and CO to produce ethanol. Under 100 mW·cm–2light intensity and ambient conditions, the hollow multishelled CeO2@PdO@FeOxnanosphere photocatalyst exhibited a peak CH4-to-ethanol yield of 728 μmol·g–1·h–1without photosensitizers or sacrificial agents, almost three times higher than the previous best reports on photocatalytic CH4oxidation to ethanol, suggesting the attractive potential of the asymmetric multishelled catalytic interfaces.
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- 2024
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3. Aptamer-Based Targeted Delivery of Functional Nucleic Acids
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Sitao Xie, Weidi Sun, Ting Fu, Xiangsheng Liu, Peng Chen, Liping Qiu, Fengli Qu, and Weihong Tan
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Colloid and Surface Chemistry ,General Chemistry ,Biochemistry ,Catalysis - Published
- 2023
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4. High-Power CO2-to-C2 Electroreduction on Ga-Spaced, Square-like Cu Sites
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Yan, Shuai, primary, Chen, Zheng, additional, Chen, Yangshen, additional, Peng, Chen, additional, Ma, Xingyu, additional, Lv, Ximeng, additional, Qiu, Zhehao, additional, Yang, Yong, additional, Yang, Yaoyue, additional, Kuang, Min, additional, Xu, Xin, additional, and Zheng, Gengfeng, additional
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- 2023
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5. 2-Ethynylbenzaldehyde-Based, Lysine-Targeting Irreversible Covalent Inhibitors for Protein Kinases and Nonkinases
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Peng Chen, Guanghui Tang, Chengjun Zhu, Jie Sun, Xuan Wang, Menghua Xiang, Huisi Huang, Wei Wang, Lin Li, Zhi-Min Zhang, Liqian Gao, and Shao Q. Yao
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Colloid and Surface Chemistry ,General Chemistry ,Biochemistry ,Catalysis - Published
- 2023
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6. General Strategy To Improve the Photon Budget of Thiol-Conjugated Cyanine Dyes
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Yuan Zhang, Chen Yang, Sijia Peng, Jing Ling, Peng Chen, Yumiao Ma, Wenjuan Wang, Zhixing Chen, and Chunlai Chen
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Colloid and Surface Chemistry ,General Chemistry ,Biochemistry ,Catalysis - Published
- 2023
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7. Use of (E,E)-Dienoic Acids as Switchable (E,E)- and (Z,E)-Dienyl Anion Surrogates via Ligand-Controlled Palladium Catalysis
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Shun-Zhong Tan, Peng Chen, Lei Zhu, Meng-Qi Gan, Qin Ouyang, Wei Du, and Ying-Chun Chen
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Colloid and Surface Chemistry ,General Chemistry ,Biochemistry ,Catalysis - Published
- 2022
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8. Divergent Synthesis of Scabrolide A and Havellockate via an exo-exo-endo Radical Cascade.
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Peng, Chen, Guo, Quanping, Xu, Guo-Xiong, Huo, Luqiong, Wu, Weilin, Chen, Tian-Yi, Hong, Xin, and Hu, Pengfei
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- 2024
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9. Efficient Electrocatalytic Reduction of CO2 to Ethane over Nitrogen-Doped Fe2O3
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Peng Chen, Pei Zhang, Xinchen Kang, Lirong Zheng, Guang Mo, Ruizhi Wu, Jing Tai, and Buxing Han
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Colloid and Surface Chemistry ,General Chemistry ,Biochemistry ,Catalysis - Published
- 2022
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10. High-Power CO2‑to‑C2 Electroreduction on Ga-Spaced, Square-like Cu Sites.
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Yan, Shuai, Chen, Zheng, Chen, Yangshen, Peng, Chen, Ma, Xingyu, Lv, Ximeng, Qiu, Zhehao, Yang, Yong, Yang, Yaoyue, Kuang, Min, Xu, Xin, and Zheng, Gengfeng
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- 2023
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11. Use of (
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Shun-Zhong, Tan, Peng, Chen, Lei, Zhu, Meng-Qi, Gan, Qin, Ouyang, Wei, Du, and Ying-Chun, Chen
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Anions ,Imines ,Ligands ,Palladium ,Catalysis - Abstract
Carboxylic acids are not readily applied as carbon-based nucleophiles due to their intrinsic acidic group. Here, we demonstrate that free (
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- 2022
12. Covalently Engineered Nanobody Chimeras for Targeted Membrane Protein Degradation
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Heng Zhang, Feng Lin, Jian Lin, Yu Han, Kexin Li, Linghao Kong, Yuan-Fan Yang, Peng Chen, Yongjun Dang, and Hongxiang Liu
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chemistry.chemical_classification ,media_common.quotation_subject ,Peptide ,Sequence (biology) ,General Chemistry ,Biochemistry ,Catalysis ,Cell biology ,Chimera (genetics) ,Colloid and Surface Chemistry ,Membrane protein ,chemistry ,Antigen ,Covalent bond ,Proteolysis ,Cancer cell ,Internalization ,media_common - Abstract
The targeted degradation of membrane proteins would afford an attractive and general strategy for treating various diseases that remain difficult with the current proteolysis-targeting chimera (PROTAC) methodology. We herein report a covalent nanobody-based PROTAC strategy, termed GlueTAC, for targeted membrane protein degradation with high specificity and efficiency. We first established a mass-spectrometry-based screening platform for the rapid development of a covalent nanobody (GlueBody) that allowed proximity-enabled cross-linking with surface antigens on cancer cells. By conjugation with a cell-penetrating peptide and a lysosomal-sorting sequence, the resulting GlueTAC chimera triggered the internalization and degradation of programmed death-ligand 1 (PD-L1), which provides a new avenue to target and degrade cell-surface proteins.
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- 2021
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13. De Novo Construction of Chiral Aminoindolines by Cu-Catalyzed Asymmetric Cyclization and Subsequent Discovery of an Unexpected Sulfonyl Migration
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Bao-Cheng Wang, Tingting Fan, Fen-Ya Xiong, Peng Chen, Kai-Xin Fang, Ying Tan, Liang-Qiu Lu, and Wen-Jing Xiao
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Colloid and Surface Chemistry ,Cyclization ,Stereoisomerism ,General Chemistry ,Amines ,Biochemistry ,Catalysis - Abstract
Searching for efficient strategies to access structurally novel aminoindolines is of great significance for drug discovery. However, catalytic asymmetric de novo construction of aminoindoline scaffolds with functionality primed for diversification still remains elusive. Here, we report a Cu-catalyzed asymmetric cyclization of ethynyl benzoxazinones with amines, producing chiral 3-aminoindolines in good yield and with high enantioselectivity (up to 97% yield and 98:2 er). Moreover, a radical-mediated sulfonyl migration of these products was unexpectedly found, further affording new chiral 3-aminoindolines bearing alkenyl sulfonyl groups with retained enantiopurity (up to 84% yield and 98:2 er). Bioactivity evaluations indicate that these 3-aminoindolines show notable antitumor activities and chirality is proven to have a significant impact on their antitumor activity.
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- 2022
14. High-Power CO2-to-C2Electroreduction on Ga-Spaced, Square-like Cu Sites
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Yan, Shuai, Chen, Zheng, Chen, Yangshen, Peng, Chen, Ma, Xingyu, Lv, Ximeng, Qiu, Zhehao, Yang, Yong, Yang, Yaoyue, Kuang, Min, Xu, Xin, and Zheng, Gengfeng
- Abstract
The electrochemical conversion of CO2into multicarbon (C2) products on Cu-based catalysts is strongly affected by the surface coverage of adsorbed CO (*CO) intermediates and the subsequent C–C coupling. However, the increased *CO coverage inevitably leads to strong *CO repulsion and a reduced C–C coupling efficiency, thus resulting in suboptimal CO2-to-C2activity and selectivity, especially at ampere-level electrolysis current densities. Herein, we developed an atomically ordered Cu9Ga4intermetallic compound consisting of Cu square-like binding sites interspaced by catalytically inert Ga atoms. Compared to Cu(100) previously known with a high C2selectivity, the Ga-spaced, square-like Cu sites presented an elongated Cu–Cu distance that allowed to reduce *CO repulsion and increased *CO coverage simultaneously, thus endowing more efficient C–C coupling to C2products than Cu(100) and Cu(111). The Cu9Ga4catalyst exhibited an outstanding CO2-to-C2electroreduction, with a peak C2partial current density of 1207 mA cm–2and a corresponding Faradaic efficiency of 71%. Moreover, the Cu9Ga4catalyst demonstrated a high-power (∼200 W) electrolysis capability with excellent electrochemical stability.
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- 2023
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15. Highly Emissive Perylene Diimide-Based Metallacages and Their Host–Guest Chemistry for Information Encryption
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Mingming Zhang, Shuai Lu, Jun Yuan, Kelong Zhu, Zeyuan Zhang, Wei-Peng Chen, Yali Hou, Qiangyu Zhu, Sanliang Ling, Xiaopeng Li, and Yan-Zhen Zheng
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business.industry ,Triphenylene ,General Chemistry ,Photochemistry ,Encryption ,Biochemistry ,Fluorescence ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,chemistry ,Diimide ,Pyrene ,Acetonitrile ,Host–guest chemistry ,business ,Perylene - Abstract
Here we report two highly emissive perylene diimide (PDI)-based metallacages and explore their complexation with polycyclic aromatic hydrocarbons, such as pyrene, triphenylene, and perylene. The fluorescence quantum yields of metallacages exceed 90% and their binding constants with perylene can reach as high as 2.41 × 104 M-1 in acetonitrile. These features enable further tuning of the emission of the host-guest complexes to obtain white-light emission based on the complementary orange emission of the metallacages and the blue emission of perylene. Moreover, owing to the huge differences of their quantum yields in solution and in the solid state, the host-guest complexes are successfully employed for information encryption. This study offers a general approach for the construction of emissive metallacages and explores their application for information encryption.
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- 2020
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16. Bioorthogonal Photocatalytic Decaging-Enabled Mitochondrial Proteomics
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Ruxin Zeng, Peng Chen, Zongyu Huang, Xinyuan Fan, Xiao Xie, Ziqi Liu, Linghao Kong, and Zujie Chen
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chemistry.chemical_classification ,Proteomics ,biology ,Cell ,General Chemistry ,Mitochondrion ,biology.organism_classification ,Photochemical Processes ,Biochemistry ,In vitro ,Catalysis ,Mitochondria ,HeLa ,Colloid and Surface Chemistry ,Enzyme ,medicine.anatomical_structure ,chemistry ,Proteome ,medicine ,Humans ,Bioorthogonal chemistry ,HeLa Cells - Abstract
Spatiotemporally resolved dissection of subcellular proteome is crucial to our understanding of cellular functions in health and disease. We herein report a bioorthogonal and photocatalytic decaging-enabled proximity labeling strategy (CAT-Prox) for spatiotemporally resolved mitochondrial proteome profiling in living cells. Our systematic survey of the photocatalysts has led to the identification of Ir(ppy)2bpy as a bioorthogonal and mitochondria-targeting catalyst that allowed photocontrolled, rapid rescue of azidobenzyl-caged quinone methide as a highly reactive Michael acceptor for proximity-based protein labeling in mitochondria of live cells. Upon careful validation through in vitro labeling, mitochondria-targeting specificity, in situ catalytic activity as well as protein tagging, we applied CAT-Prox for mitochondria proteome profiling in living Hela cells as well as hard-to-transfect macrophage RAW264.7 cells with approximately 70% mitochondria specificity observed from up to 300 proteins enriched. Finally, CAT-Prox was further applied to the dynamic dissection of mitochondria proteome of macrophage cells upon lipopolysaccharide stimulation. By integrating photocatalytic decaging chemistry with proximity-based protein labeling, CAT-Prox offers a general, catalytic, and nongenetic alternative to the enzyme-based proximity labeling strategies for diverse live cell settings.
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- 2021
17. The Gigantic {Ni36Gd102} Hexagon: A Sulfate-Templated 'Star-of-David' for Photocatalytic CO2 Reduction and Magnetic Cooling
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Shi-Cheng Wang, Bo-Kai Ling, Yi-Tsu Chan, Yan-Zhen Zheng, Peng-Bo Jin, Xiao-Ming Chen, Pei-Qin Liao, Wei-Peng Chen, and Lei Zhang
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Chemistry ,Metal ions in aqueous solution ,General Chemistry ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Reduction (complexity) ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Photocatalysis ,Magnetic refrigeration ,Molecule ,Sulfate - Abstract
Gigantic coordination molecules assembled from a large number of metal ions and organic ligands are structurally and functionally challenging to characterize. Here we show that a heterometallic clu...
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- 2020
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18. Circularly Polarized Thermally Activated Delayed Fluorescence Emitters in Through-Space Charge Transfer on Asymmetric Spiro Skeletons
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Yang, Sheng-Yi, primary, Wang, Ya-Kun, additional, Peng, Chen-Chen, additional, Wu, Zheng-Guang, additional, Yuan, Shuai, additional, Yu, You-Jun, additional, Li, Hao, additional, Wang, Tong-Tong, additional, Li, Hong-Cheng, additional, Zheng, You-Xuan, additional, Jiang, Zuo-Quan, additional, and Liao, Liang-Sheng, additional
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- 2020
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19. The Gigantic {Ni
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Wei-Peng, Chen, Pei-Qin, Liao, Peng-Bo, Jin, Lei, Zhang, Bo-Kai, Ling, Shi-Cheng, Wang, Yi-Tsu, Chan, Xiao-Ming, Chen, and Yan-Zhen, Zheng
- Abstract
Gigantic coordination molecules assembled from a large number of metal ions and organic ligands are structurally and functionally challenging to characterize. Here we show that a heterometallic cluster [Ni
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- 2020
20. Copper-Triggered Bioorthogonal Cleavage Reactions for Reversible Protein and Cell Surface Modifications
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Xin Wang, William Shu Ching Ngai, Yanjun Liu, Gong Zhang, Peng Chen, Jian Lin, Heng Zhang, Xinyuan Fan, Jiaofeng Li, and Jie Wang
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Lysine-tRNA Ligase ,Immunoconjugates ,Receptor, ErbB-2 ,Green Fluorescent Proteins ,010402 general chemistry ,Cleavage (embryo) ,Ligands ,01 natural sciences ,Biochemistry ,Proof of Concept Study ,Catalysis ,Colloid and Surface Chemistry ,Phenols ,Coumarins ,Side chain ,Organometallic Compounds ,Humans ,Prodrugs ,Protein Interaction Maps ,Amines ,Etoposide ,Chemistry ,Cell Membrane ,General Chemistry ,Combinatorial chemistry ,Small molecule ,0104 chemical sciences ,Drug Liberation ,Membrane ,Doxorubicin ,Mutagenesis ,Cancer cell ,Bioorthogonal chemistry ,Linker ,Copper ,Conjugate ,HeLa Cells - Abstract
Temporal and reversible control over protein and cell conjugations holds great potential for traceless release of antibody-drug conjugates (ADCs) on tumor sites as well as on-demand altering or removal of targeting elements on cell surface. We herein developed a bioorthogonal and traceless releasable reaction on proteins and intact cells to fulfill such purposes. A systematic survey of transition metals in catalyzing the bioorthogonal cleavage reactions revealed that copper complexes such as Cu(I)-BTTAA and dual-substituted propargyl (dsPra) or propargyloxycarbonyl (dsProc) moieties offered a bioorthogonal releasable pair for reversible blockage and rescue of primary amines and phenol alcohols on small molecule drugs, protein side chains, as well as intact cell surface. For proof-of-concept, we employed such Cu(I)-BTTAA/dsProc and Cu(I)-BTTAA/dsPra pairs as a "traceless linker" strategy to construct cleavable ADCs to unleash cytotoxic compounds on cancer cells in situ and as a "reversible modification" strategy for cell surface engineering. Furthermore, by coupling with the genetic code expansion strategy, we site-specifically modulated ligand-receptor interactions on live cell membranes. Together, our work expanded the transition-metal-mediated bioorthogonal cleavage tool kit from terminal decaging to internal-linker breakage, which offered a temporal and reversible conjugation strategy on therapeutic proteins and cells.
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- 2019
21. Palladium-Triggered Chemical Rescue of Intracellular Proteins via Genetically Encoded Allene-Caged Tyrosine
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Xin Wang, Jie Li, Jiaofeng Li, Siqi Zheng, Gong Zhang, Zhi Lin, Peng Chen, Zhaoyue Zhang, Yanjun Liu, and Jie Wang
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Stereochemistry ,Bacterial Toxins ,Lysine ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Humans ,Moiety ,Taq Polymerase ,Tyrosine ,chemistry.chemical_classification ,Antigens, Bacterial ,010405 organic chemistry ,HEK 293 cells ,General Chemistry ,0104 chemical sciences ,Alkadienes ,HEK293 Cells ,Enzyme ,chemistry ,Bioorthogonal chemistry ,Palladium ,Taq polymerase ,Proto-oncogene tyrosine-protein kinase Src - Abstract
Chemical de-caging has emerged as an attractive strategy for gain-of-function study of proteins via small-molecule reagents. The previously reported chemical de-caging reactions have been largely centered on liberating the side chain of lysine on a given protein. Herein, we developed an allene-based caging moiety and the corresponding palladium de-caging reagents for chemical rescue of tyrosine (Tyr) activity on intracellular proteins. This bioorthogonal de-caging pair has been successfully applied to unmask enzymatic Tyr sites (e.g., Y671 on Taq polymerase and Y728 on Anthrax lethal factor) as well as the post-translational Tyr modification site (Y416 on Src kinase) in vitro and in living cells. Our strategy provides a general platform for chemical rescue of Tyr-dependent protein activity inside cells.
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- 2016
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22. Enzyme-Mediated Intercellular Proximity Labeling for Detecting Cell-Cell Interactions
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Long Chen, Yun Ge, Peng Chen, Shibo Liu, Jingyi Zhao, and Heng Zhang
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Models, Molecular ,Cell signaling ,Staphylococcus aureus ,Surface Properties ,Cell ,Cell Communication ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Catalysis ,Cell labeling ,Cell Line ,Colloid and Surface Chemistry ,medicine ,Humans ,chemistry.chemical_classification ,Staining and Labeling ,HEK 293 cells ,General Chemistry ,Aminoacyltransferases ,0104 chemical sciences ,Cell biology ,medicine.anatomical_structure ,Enzyme ,HEK293 Cells ,chemistry ,Cell culture ,Sortase A ,Intracellular - Abstract
Cell–cell interactions and communications play fundamental roles in life processes but remain largely uncharacterized. We developed an enzyme-mediated proximity cell labeling (EXCELL) strategy as a general method to detect and record cell–cell interactions under living conditions. EXCELL relies on an evolved Staphylococcus aureus transpeptidase sortase A variant (mgSrtA) capable of promiscuous labeling of various cell surface proteins containing a monoglycine residue at the N-terminus. Displaying mgSrtA on the surface of a cell of interest allows the labeling and detection of interacting cells in a proximity-dependent fashion.
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- 2019
23. Exploring Applications of Covalent Organic Frameworks: Homogeneous Reticulation of Radicals for Dynamic Nuclear Polarization
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Xiaoling Wang, Jochem Struppe, Wei Wang, Ming-Xing Xiao, San-Yuan Ding, Shi Bai, Hai-Sen Xu, Wei David Wang, Lu-Yao Wang, Guo-Peng Chen, Zhehong Gan, Wei Cao, Ivan V. Sergeyev, and Frederic Mentink-Vigier
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Magnetic Resonance Spectroscopy ,Free Radicals ,Molecular Structure ,Chemistry ,Radical ,02 engineering and technology ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Biochemistry ,Homogeneous distribution ,Catalysis ,Article ,0104 chemical sciences ,Colloid and Surface Chemistry ,Unpaired electron ,Homogeneous ,Chemical physics ,Covalent bond ,Molecule ,0210 nano-technology ,Polarization (electrochemistry) ,Metal-Organic Frameworks - Abstract
Rapid progress has been witnessed in the past decade in the fields of covalent organic frameworks (COFs) and dynamic nuclear polarization (DNP). In this contribution, we bridge these two fields by constructing radical-embedded COFs as promising DNP agents. Via polarization transfer from unpaired electrons to nuclei, DNP realizes significant enhancement of NMR signal intensities. One of the crucial issues in DNP is to screen for suitable radicals to act as efficient polarizing agents, the basic criteria for which are homogenous distribution and fixed orientation of unpaired electrons. We therefore envisioned that the crystalline and porous structures of COFs, if evenly embedded with radicals, may work as new “crystalline sponge” for DNP experiments. As a proof of concept, we constructed a series of proxyl radical-embedded COFs (denoted as PR(x)-COFs) and successfully applied them to achieve substantial DNP enhancement. Benefitting from the bottom-up and multivariate synthetic strategies, proxyl radicals have been covalently reticulated, homogenously distributed, and rigidly embedded into the crystalline and mesoporous frameworks with adjustable concentration (x%). Excellent performance of PR(x)-COFs has been observed for DNP (1)H, (13)C, and (15)N solid-state NMR enhancements. This contribution not only realizes the direct construction of radical COFs from radical monomers, but also explores the new application of COFs as DNP polarizing agents. Given that many radical COFs can therefore be rationally designed and facilely constructed with well-defined composition, distribution, and pore size, we expect that our effort will pave the way for utilizing radical COFs as standard polarizing agents in DNP NMR experiments.
- Published
- 2018
24. Charge Carrier Activity on Single-Particle Photo(electro)catalysts: Toward Function in Solar Energy Conversion
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Peng Chen, Mahdi Hesari, and Xianwen Mao
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Photocurrent ,Photoluminescence ,Chemistry ,business.industry ,Nanotechnology ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Biochemistry ,Catalysis ,0104 chemical sciences ,Colloid and Surface Chemistry ,Semiconductor ,Microscopy ,Energy transformation ,Charge carrier ,Surface charge ,0210 nano-technology ,business ,Nanoscopic scale - Abstract
Understanding the fundamental properties of charge carriers on the surface of semiconductor photo(electro)catalysts is key to the rational design of efficient photo(electro)catalytic devices for sunlight-driven energy conversion. Here high spatial resolution information is always desirable because of the ubiquitous heterogeneity in semiconductor particles. In this Perspective, we review the latest advances in nanoscale imaging and quantitative analysis of charge carrier activities on individual semiconductor particles down to subparticle resolution, covering the approaches of single-molecule super-resolution fluorescence imaging, scanning electron microscopy, and photoluminescence microscopy. We further highlight direct, operando functional assessments of their performances toward the targeted photo(electro)catalytic processes through single- and subparticle photocurrent measurements. We also discuss the significance of establishing quantitative relations between the desired functions of photo(electro)catalysts and their surface charge carrier activities. These fundamental relations can provide guiding principles for rationally engineering photo(electro)catalytic systems, for example with cocatalysts, for a broad range of applications.
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- 2018
25. Genetically Encoded Photoaffinity Histone Marks
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Haiping Song, Jianwei Lin, Xiao-Meng Li, Rongfeng Zhu, Gong Zhang, Fangfei Qin, Peng Chen, Xiucong Bao, Jingyi Zhao, Xiao Xie, and Xiang David Li
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0301 basic medicine ,Lysine ,Molecular Conformation ,Photoaffinity Labels ,complex mixtures ,Biochemistry ,Catalysis ,Histones ,03 medical and health sciences ,Colloid and Surface Chemistry ,Histone H2A ,Histone code ,chemistry.chemical_classification ,biology ,Effector ,General Chemistry ,Genetic code ,030104 developmental biology ,Histone ,Enzyme ,chemistry ,Genetic Code ,Histone methyltransferase ,biology.protein ,bacteria - Abstract
Posttranslational modifications (PTMs) of lysine are crucial histone marks that regulate diverse biological processes. The functional roles and regulation mechanism of many newly identified lysine PTMs, however, remain yet to be understood. Here we report a photoaffinity crotonyl lysine (Kcr) analogue that can be genetically and site-specifically incorporated into histone proteins. This, in conjunction with the genetically encoded photo-lysine as a “control probe”, enables the capture and identification of enzymatic machinery and/or effector proteins for histone lysine crotonylation.
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- 2017
26. Genetically Encoded Cleavable Protein Photo-Cross-Linker
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Peng Chen, Teng Long, Shixian Lin, Dan He, Shuai Zhang, and Rong Meng
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Proteomics ,Fluorophore ,Green Fluorescent Proteins ,Biotin ,Selenenic acid ,Plasma protein binding ,Tandem mass spectrometry ,Biochemistry ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Tandem Mass Spectrometry ,Organoselenium Compounds ,Protein Interaction Mapping ,Electrophoresis, Gel, Two-Dimensional ,Binding site ,Binding Sites ,Proteins ,Hydrogen Peroxide ,General Chemistry ,Photochemical Processes ,Cross-Linking Reagents ,Models, Chemical ,chemistry ,Chromatography, Liquid ,Protein Binding - Abstract
We have developed a genetically encoded, selenium-based cleavable photo-cross-linker that allows for the separation of bait and prey proteins after protein photo-cross-linking. We have further demonstrated the efficient capture of the in situ generated selenenic acid on the cleaved prey proteins. Our strategy involves tagging the selenenic acid with an alkyne-containing dimethoxyaniline molecule and subsequently labeling with an azide-bearing fluorophore or biotin probe. This cleavage-and-capture after protein photo-cross-linking strategy allows for the efficient capture of prey proteins that are readily accessible by two-dimensional gel-based proteomics and mass spectrometry analysis.
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- 2014
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27. Redox-Active AIEgen-Derived Plasmonic and Fluorescent Core@Shell Nanoparticles for Multimodality Bioimaging
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He, Xuewen, primary, Zhao, Zheng, additional, Xiong, Ling-Hong, additional, Gao, Peng Fei, additional, Peng, Chen, additional, Li, Rong Sheng, additional, Xiong, Yu, additional, Li, Zhi, additional, Sung, Herman H.-Y., additional, Williams, Ian D., additional, Kwok, Ryan T. K., additional, Lam, Jacky W. Y., additional, Huang, Cheng Zhi, additional, Ma, Nan, additional, and Tang, Ben Zhong, additional
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- 2018
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28. Ligand-Free Palladium-Mediated Site-Specific Protein Labeling Inside Gram-Negative Bacterial Pathogens
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Maiyun Yang, Ziyang Hao, Shixian Lin, Shang Jia, Peng Chen, Jie Li, Jie Wang, and Xiaoyu Zhang
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inorganic chemicals ,chemistry.chemical_classification ,Staining and Labeling ,Chemistry ,Ligand ,Green Fluorescent Proteins ,Pyrrolysine ,Alkyne ,Sonogashira coupling ,chemistry.chemical_element ,Context (language use) ,General Chemistry ,Biochemistry ,Combinatorial chemistry ,Catalysis ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Bacterial Proteins ,Escherichia coli ,Organic synthesis ,Shigella ,Bioorthogonal chemistry ,Palladium - Abstract
Palladium, a key transition metal in advancing modern organic synthesis, mediates diverse chemical conversions including many carbon-carbon bond formation reactions between organic compounds. However, expanding palladium chemistry for conjugation of biomolecules such as proteins, particularly within their native cellular context, is still in its infancy. Here we report the site-specific protein labeling inside pathogenic Gram-negative bacterial cells via a ligand-free palladium-mediated cross-coupling reaction. Two rationally designed pyrrolysine analogues bearing an aliphatic alkyne or an iodophenyl handle were first encoded in different enteric bacteria, which offered two facial handles for palladium-mediated Sonogashira coupling reaction on proteins within these pathogens. A GFP-based bioorthogonal reaction screening system was then developed, allowing evaluation of both the efficiency and the biocompatibilty of various palladium reagents in promoting protein-small molecule conjugation. The identified simple compound-Pd(NO3)2 exhibited high efficiency and biocompatibility for site-specific labeling of proteins in vitro and inside living E. coli cells. This Pd-mediated protein coupling method was further utilized to label and visualize a Type-III Secretion (T3S) toxin-OspF in Shigella cells. Our strategy may be generally applicable for imaging and tracking various virulence proteins within Gram-negative bacterial pathogens.
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- 2013
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29. Size-dependent catalytic activity and dynamics of gold nanoparticles at the single-molecule level
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Xiaochun Zhou, Weilin Xu, Guokun Liu, Panda, Debashis, and Peng Chen
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Catalysis -- Analysis ,Fluorescence microscopy -- Usage ,Gold -- Chemical properties ,Gold -- Optical properties ,Nanoparticles -- Chemical properties ,Nanoparticles -- Optical properties ,Chemistry - Abstract
The single-molecule fluorescence microscopy technique is employed to explain the size-dependent catalytic activity, as well as the dynamics of the gold nanoparticles at the single-molecule level. The quantitative values of the activation energies and time scales of the nanoparticles are also determined.
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- 2010
30. Dynamic Multibody Protein Interactions Suggest Versatile Pathways for Copper Trafficking
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Feng Yang, Aaron M. Keller, Derek Klarin, Matthew J. Goldfogel, Jaime J. Benítez, Tai-Yen Chen, Peng Chen, and Linghao Zhong
- Subjects
Plasma protein binding ,Molecular Dynamics Simulation ,Biochemistry ,Article ,Catalysis ,Protein–protein interaction ,Molecular dynamics ,Colloid and Surface Chemistry ,Fluorescence Resonance Energy Transfer ,Humans ,Cation Transport Proteins ,Adenosine Triphosphatases ,biology ,Protein Stability ,Chemistry ,Intermolecular force ,Biological Transport ,General Chemistry ,Protein Structure, Tertiary ,Transport protein ,Kinetics ,Crystallography ,Förster resonance energy transfer ,Copper-Transporting ATPases ,Chaperone (protein) ,Intramolecular force ,biology.protein ,Biophysics ,Copper ,Protein Binding - Abstract
As part of intracellular copper trafficking pathways, the human copper chaperone Hah1 delivers Cu(+) to the Wilson's Disease Protein (WDP) via weak and dynamic protein-protein interactions. WDP contains six homologous metal binding domains (MBDs) connected by flexible linkers, and these MBDs all can receive Cu(+) from Hah1. The functional roles of the MBD multiplicity in Cu(+) trafficking are not well understood. Building on our previous study of the dynamic interactions between Hah1 and the isolated fourth MBD of WDP, here we study how Hah1 interacts with MBD34, a double-domain WDP construct, using single-molecule fluorescence resonance energy transfer (smFRET) combined with vesicle trapping. By alternating the positions of the smFRET donor and acceptor, we systematically probed Hah1-MBD3, Hah1-MBD4, and MBD3-MBD4 interaction dynamics within the multidomain system. We found that the two interconverting interaction geometries were conserved in both intermolecular Hah1-MBD and intramolecular MBD-MBD interactions. The Hah1-MBD interactions within MBD34 are stabilized by an order of magnitude relative to the isolated single-MBDs, and thermodynamic and kinetic evidence suggest that Hah1 can interact with both MBDs simultaneously. The enhanced interaction stability of Hah1 with the multi-MBD system, the dynamic intramolecular MBD-MBD interactions, and the ability of Hah1 to interact with multiple MBDs simultaneously suggest an efficient and versatile mechanism for the Hah1-to-WDP pathway to transport Cu(+).
- Published
- 2012
- Full Text
- View/download PDF
31. Site-Specific Incorporation of Photo-Cross-Linker and Bioorthogonal Amino Acids into Enteric Bacterial Pathogens
- Author
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She Chen, Ziyang Hao, Shixian Lin, Lin Li, Hao Xu, Zhenrun Zhang, Peng Chen, and Jie Li
- Subjects
chemistry.chemical_classification ,biology ,Photochemistry ,Effector ,Pyrrolysine ,General Chemistry ,medicine.disease_cause ,Biochemistry ,Catalysis ,Type three secretion system ,Amino acid ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,chemistry ,Salmonella ,Chaperone (protein) ,Escherichia coli ,medicine ,biology.protein ,Shigella ,Secretion ,Amino Acids ,Bioorthogonal chemistry - Abstract
Enteric bacterial pathogens are known to effectively pass through the extremely acidic mammalian stomachs and cause infections in the small and/or large intestine of human hosts. However, their acid-survival strategy and pathogenesis mechanisms remain elusive, largely due to the lack of tools to directly monitor and manipulate essential components (e.g., defense proteins or invasive toxins) participating in these processes. Herein, we have extended the pyrrolysine-based genetic code expansion strategy for encoding unnatural amino acids in enteric bacterial species, including enteropathogenic Escherichia coli , Shigella , and Salmonella . Using this system, a photo-cross-linking amino acid was incorporated into a Shigella acid chaperone HdeA (shHdeA), which allowed the identification of a comprehensive list of in vivo client proteins that are protected by shHdeA upon acid stress. To further demonstrate the application of our strategy, an azide-bearing amino acid was introduced into a Shigella type 3 secretion effector, OspF, without interruption of its secretion efficiency. This site-specifically installed azide handle allowed the facile detection of OspF's secretion in bacterial extracellular space. Taken together, these bioorthogonal functionalities we incorporated into enteric pathogens were shown to facilitate the investigation of unique and important proteins involved in the pathogenesis and stress-defense mechanisms of pathogenic bacteria that remain exceedingly difficult to study using conventional methodologies.
- Published
- 2011
- Full Text
- View/download PDF
32. Engineered Holliday junctions as single-molecule reporters for protein-DNA interactions with application to a MerR-family regulator
- Author
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Sarkar, Susanta K., Andoy, Nesha May, Benitez, Jaime J., Peng R. Chen, Kong, Jason S., Chuan He, and Peng Chen
- Subjects
DNA -- Properties ,Binding proteins -- Research ,Genetic regulation -- Research ,Chemistry - Abstract
The article presents a new approach to use the engineered DNA Holliday junctions (HJs) for reporting the protein-DNA interactions in various experiments. The method is highly efficient, as the changes in DNA due to the MerR-family regulator, PbrR691 give accurate results.
- Published
- 2007
33. Coordination polymers containing 1D channels as selective luminescent probes
- Author
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Bin Zhao, Xiao-Yan Chen, Peng-Chen, Dai-Zheng Liao, Shi-Ping Yan, and Zong-Hui Jiang
- Subjects
Rare earth metals -- Optical properties ,Polymers -- Research ,Chemistry - Abstract
A few examples of 3D coordination polymers based on 3d-4f mixed metals are reported. The result provides an opening into a promising new field of luminescent probes based on nanoporous d-f heterometallic coordination polymers.
- Published
- 2004
34. Spectroscopy and Bonding in Side-On and End-On Cu2(S2) Cores: Comparison to Peroxide Analogues
- Author
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Edward I. Solomon, Kiyoshi Fujisawa, Peng Chen, Kenneth D. Karlin, and Matthew E. Helton
- Subjects
Models, Molecular ,Valence (chemistry) ,Absorption spectroscopy ,Chemistry ,Orbital hybridisation ,Analytical chemistry ,General Chemistry ,Spectrum Analysis, Raman ,Biochemistry ,Peroxide ,Catalysis ,Peroxides ,Crystallography ,symbols.namesake ,chemistry.chemical_compound ,Colloid and Surface Chemistry ,Covalent bond ,Excited state ,Organometallic Compounds ,symbols ,Thermodynamics ,Molecule ,Disulfides ,Raman spectroscopy ,Copper - Abstract
Spectroscopic methods combined with density functional calculations were used to study the disulfide-Cu(II) bonding interactions in the side-on micro -eta(2):eta(2)-bridged Cu(2)(S(2)) complex, [[Cu(II)[HB(3,5-Pr(i)(2)pz)(3)]](2)(S(2))], and the end-on trans- micro -1,2-bridged Cu(2)(S(2)) complex, [[Cu(II)(TMPA)](2)(S(2))](2+), in correlation to their peroxide structural analogues. Resonance Raman shows weaker S-S bonds and stronger Cu-S bonds in the disulfide complexes relative to the O-O and Cu-O bonds in the peroxide analogues. The weaker S-S bonds come from the more limited interaction between the S 3p orbitals relative to that of the O 2s/p hybrid orbitals. The stronger Cu-S bonds result from the more covalent Cu-disulfide interactions relative to the Cu-peroxide interactions. This is consistent with the higher energy of the disulfide valence level relative to that of the peroxide. The ground states of the side-on Cu(2)(S(2))/Cu(2)(O(2)) complexes are more covalent than those of the end-on Cu(2)(S(2))/Cu(2)(O(2)) complexes. This derives from the larger sigma-donor interactions in the side-on micro -eta(2):eta(2) structure, which has four Cu-disulfide/peroxide bonds, relative to the end-on trans- micro -1,2 structure, which forms two bonds to the Cu. The larger disulfide/peroxide sigma-donor interactions in the side-on complexes are reflected in their more intense higher energy disulfide/peroxide to Cu charge transfer transitions in the absorption spectra. The large ground-state covalencies of the side-on complexes result in significant nuclear distortions in the ligand-to-metal charge transfer excited states, which give rise to the strong resonance Raman enhancements of the metal-ligand and intraligand vibrations. Particularly, the large covalency of the Cu-disulfide interaction in the side-on Cu(2)(S(2)) complex leads to a different rR enhancement profile, relative to the peroxide analogues, reflecting a S-S bond distortion in the opposite directions in the disulfide/peroxide pi(sigma) to Cu charge transfer excited states. A ligand sigma back-bonding interaction exists only in the side-on complexes, and there is more sigma mixing in the side-on Cu(2)(S(2)) complex than in the side-on Cu(2)(O(2)) complex. This sigma back-bonding is shown to significantly weaken the S-S/O-O bond relative to that of the analogous end-on complex, leading to the low nu(S)(-)(S)/nu(O)(-)(O) vibrational frequencies observed in the resonance Raman spectra of the side-on complexes.
- Published
- 2003
- Full Text
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35. Spectroscopic and Electronic Structure Studies of the μ4-Sulfide Bridged Tetranuclear CuZ Cluster in N2O Reductase: Molecular Insight into the Catalytic Mechanism
- Author
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José J. G. Moura, Edward I. Solomon, Inês Cabrito, Peng Chen, and Isabel Moura
- Subjects
Models, Molecular ,Sulfide ,Electronic structure ,Sulfides ,Reductase ,Crystallography, X-Ray ,Spectrum Analysis, Raman ,Photochemistry ,Biochemistry ,Catalysis ,Colloid and Surface Chemistry ,Atomic orbital ,Histidine ,chemistry.chemical_classification ,Valence (chemistry) ,Chemistry ,Circular Dichroism ,Electron Spin Resonance Spectroscopy ,General Chemistry ,Crystallography ,Superexchange ,Thermodynamics ,Oxidoreductases ,Ground state ,Copper - Abstract
Spectroscopic methods combined with density functional calculations are used to develop a detailed bonding description of the mu(4)-sulfide bridged tetranuclear Cu(Z) cluster in N(2)O reductase. The ground state of Cu(Z) has the 1Cu(II)/3Cu(I) configuration. The single electron hole dominantly resides on one Cu atom (Cu(I)) and partially delocalizes onto a second Cu atom (Cu(II)) via a Cu(I)-S-Cu(II) sigma/sigma superexchange pathway which is manifested by a Cu(II) --Cu(I) intervalence transfer transition in absorption. The observed excited-state spectral features of Cu(Z) are dominated by the S --Cu(I) charge-transfer transitions and Cu(I) based d-d transitions. The intensity pattern of individual S --Cu(I) charge-transfer transitions reflects different bonding interactions of the sulfur valence orbitals with the four Cu's in the Cu(Z) cluster, which are consistent with the individual Cu-S force constants obtained from a normal coordinate analysis of the Cu(Z) resonance Raman frequencies and profiles. The Cu(I) d orbital splitting pattern correlates with its distorted T-shaped ligand field geometry and accounts for the observed low g( parallel ) value of Cu(Z) in EPR. The dominantly localized electronic structure description of the Cu(Z) site results from interactions of Cu(II) with the two additional Cu's of the cluster (Cu(III)/Cu(IV)), where the Cu-Cu electrostatic interactions lead to hole localization with no metal-metal bonding. The substrate binding edge of Cu(Z) has a dominantly oxidized Cu(I) and a dominantly reduced Cu(IV). The electronic structure description of Cu(Z) provides a strategy to overcome the reaction barrier of N(2)O reduction at this Cu(I)/Cu(IV) edge by simultaneous two-electron transfer to N(2)O in a bridged binding mode. One electron can be donated directly from Cu(IV) and the other from Cu(II) through the Cu(II)-S-Cu(I) sigma/sigma superexchange pathway. A frontier orbital scheme provides molecular insight into the catalytic mechanism of N(2)O reduction by the Cu(Z) cluster.
- Published
- 2002
- Full Text
- View/download PDF
36. A Highly Selective Fluorescent Probe for Visualization of Organic Hydroperoxides in Living Cells
- Author
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Ziyang Hao, Peng Chen, Boxuan Simen Zhao, Chunhong Zheng, Yujie Liang, and Yanqun Song
- Subjects
Models, Molecular ,Cell Survival ,Molecular Sequence Data ,Nanotechnology ,Protein Engineering ,Biochemistry ,Protein Structure, Secondary ,Catalysis ,Substrate Specificity ,Colloid and Surface Chemistry ,Bacterial Proteins ,Humans ,Amino Acid Sequence ,Organic Chemicals ,Cell survival ,Fluorescent Dyes ,Hydrogen peroxide metabolism ,Chemistry ,Hydrogen Peroxide ,General Chemistry ,Protein engineering ,Highly selective ,Fluorescence ,Molecular Imaging ,Biophysics ,Substrate specificity ,Selectivity ,Transcriptional Regulatory Protein ,HeLa Cells - Abstract
The transcriptional regulatory protein OhrR is converted into a fluorescent bioprobe capable of detecting organic hydroperoxides in living cells with high sensitivity and selectivity.
- Published
- 2010
- Full Text
- View/download PDF
37. Spectroscopic and Theoretical Studies of Mononuclear Copper(II) Alkyl- and Hydroperoxo Complexes: Electronic Structure Contributions to Reactivity
- Author
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Kiyoshi Fujisawa, Peng Chen, and Edward I. Solomon
- Subjects
Ligand field theory ,chemistry.chemical_classification ,Coordination number ,General Chemistry ,Electronic structure ,Resonance (chemistry) ,Photochemistry ,Biochemistry ,Catalysis ,law.invention ,Crystallography ,symbols.namesake ,Colloid and Surface Chemistry ,chemistry ,law ,Absorption band ,symbols ,Raman spectroscopy ,Electron paramagnetic resonance ,Alkyl - Abstract
Spectroscopic studies combined with calculations are used to describe the electronic structure and vibrational properties of mononuclear four-coordinate end-on alkylperoxo and hydroperoxo Cu(II) complexes. EPR defines a Cu x2−y2 ground state with ∼62% Cu character. From absorption, MCD, and resonance Raman spectroscopies, the main bonding interaction between the alkyl(hydro)peroxide and Cu(II) is found to involve the π-donation of the alkyl(hydro)peroxide π*v into the Cu x2−y2 orbital, which dominates the observed spectroscopic features, producing an intense absorption band at ∼16 600 cm-1 (∼600 nm). On the basis of the vibrational frequencies, isotope shifts, and normal coordinate analyses, the dominant vibrations of the alkyl(hydro)peroxo complexes are assigned and the Cu−O and O−O force constants are determined. The observed strong Cu−O bond and the large alkyl(hydro)peroxide-to-Cu(II) charge donation are ascribed to the low coordination number of Cu and the distorted Td ligand field. The observed stro...
- Published
- 2000
- Full Text
- View/download PDF
38. Mechanism-based design of a photoactivatable firefly luciferase
- Author
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Jingyi Zhao, Shixian Lin, Peng Chen, Yong Huang, and Jing Zhao
- Subjects
Mechanism based ,Biochemistry ,Catalysis ,Residue (chemistry) ,Enzyme activator ,Colloid and Surface Chemistry ,Adenosine Triphosphate ,Luciferases, Firefly ,Animals ,Humans ,Luciferase ,Molecular Structure ,Chemistry ,Lysine ,HEK 293 cells ,Fireflies ,General Chemistry ,Photochemical Processes ,In vitro ,Enzyme Activation ,HEK293 Cells ,Biophysics ,Luminescence ,Carrier Proteins ,Intracellular - Abstract
We developed a photoactivatable firefly luciferase (pfLuc) whose activation can be controlled by light. A photocaged Lys analogue was site-specifically incorporated into fLuc to replace its key catalytic Lys residue, Lys529, rendering fLuc inactive until light-triggered removal of the caging group. This photoinduced gain of luminescence provides a facile approach for assessing the photolysis efficiency of this valuable photosensitive Lys analogue within the context of its carrier protein in vitro and in living cells. We further took advantage of the spatial and temporal activation feature of pfLuc for intracellular measurement of labile ATP levels without impairment of cellular physiology.
- Published
- 2013
39. Redox-Active AIEgen-Derived Plasmonic and Fluorescent Core@Shell Nanoparticles for Multimodality Bioimaging.
- Author
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Sung, Herman H.-Y., Williams, Ian D., He, Xuewen, Zhao, Zheng, Xiong, Yu, Kwok, Ryan T. K., Lam, Jacky W. Y., Xiong, Ling-Hong, Gao, Peng Fei, Peng, Chen, Tang, Ben Zhong, Li, Rong Sheng, Huang, Cheng Zhi, LL, Zhi, and Ma, Nan
- Published
- 2018
- Full Text
- View/download PDF
40. Genetically encoded copper(I) reporters with improved response for use in imaging
- Author
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Jun Liu, Chuan He, Jason Karpus, Peng Chen, and Seraphine V. Wegner
- Subjects
Yellow fluorescent protein ,Regulation of gene expression ,biology ,Chemistry ,Metal ions in aqueous solution ,chemistry.chemical_element ,General Chemistry ,Cell Separation ,Biochemistry ,Fluorescence ,Copper ,Cofactor ,Insert (molecular biology) ,Catalysis ,Colloid and Surface Chemistry ,Spectrometry, Fluorescence ,Molecular Probes ,biology.protein ,Homeostasis ,Humans ,Molecular probe ,HeLa Cells - Abstract
Copper represents one of the most important biological metal ions due to its role as a catalytic cofactor in a multitude of proteins. However, an excess of copper is highly toxic. Thus, copper is heavily regulated, and copper homeostasis is controlled by many metalloregulatory proteins in various organisms. Here we report a genetically encoded copper(I) probe capable of monitoring copper fluctuations inside living cells. We insert the copper regulatory protein Ace1 into a yellow fluorescent protein, which selectively binds copper(I) and generates improved copper(I) probes.
- Published
- 2013
41. Single-molecule catalysis mapping quantifies site-specific activity and uncovers radial activity gradient on single 2D nanocrystals
- Author
-
Guokun Liu, Hao Shen, Nesha May Andoy, Peng Chen, Eric Choudhary, and Xiaochun Zhou
- Subjects
Surface (mathematics) ,Chemistry ,Surface Properties ,Metal Nanoparticles ,General Chemistry ,Silicon Dioxide ,Biochemistry ,Metal Nanocrystals ,Catalysis ,Crystallography ,Colloid and Surface Chemistry ,Nanocrystal ,Microscopy, Fluorescence ,Microscopy, Electron, Scanning ,Molecule ,Nanorod ,Specific activity ,Gold ,Nanoscopic scale - Abstract
Shape-controlled metal nanocrystals are a new generation of nanoscale catalysts. Depending on their shapes, these nanocrystals exhibit various surface facets, and the assignments of their surface facets have routinely been used to rationalize or predict their catalytic activity in a variety of chemical transformations. Recently we discovered that for 1-dimensional (1D) nanocrystals (Au nanorods), the catalytic activity is not constant along the same side facets of single nanorods but rather differs significantly and further shows a gradient along its length, which we attributed to an underlying gradient of surface defect density resulting from their linear decay in growth rate during synthesis (Nat. Nanotechnol.2012, 7, 237-241). Here we report that this behavior also extends to 2D nanocrystals, even for a different catalytic reaction. By using super-resolution fluorescence microscopy to map out the locations of catalytic events within individual triangular and hexagonal Au nanoplates in correlation with scanning electron microscopy, we find that the catalytic activity within the flat {111} surface facet of a Au nanoplate exhibits a 2D radial gradient from the center toward the edges. We propose that this activity gradient results from a growth-dependent surface defect distribution. We also quantify the site-specific activity at different regions within a nanoplate: The corner regions have the highest activity, followed by the edge regions and then the flat surface facets. These discoveries highlight the spatial complexity of catalytic activity at the nanoscale as well as the interplay amid nanocrystal growth, morphology, and surface defects in determining nanocatalyst properties.
- Published
- 2013
42. Divergent Synthesis of Scabrolide A and Havellockate via an exo-exo-endoRadical Cascade
- Author
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Peng, Chen, Guo, Quanping, Xu, Guo-Xiong, Huo, Luqiong, Wu, Weilin, Chen, Tian-Yi, Hong, Xin, and Hu, Pengfei
- Abstract
Here we report a concise and divergent synthesis of scabrolide A and havellockate, representative members of polycyclic marine natural product furano(nor)cembranoids. The synthesis features a highly efficient exo-exo-endoradical cascade. Through the generation of two rings, three C–C bonds, and three contiguous stereocenters in one step, this remarkable transformation not only assembles the bowl-shaped, common 6–5–5 fused ring system from simple building blocks but also precisely installs the functionalities at desired positions and sets the stage for further divergent preparation of both target molecules. Further studies reveal that the robust and unusual 6-endoradical addition in the cascade is likely facilitated by the rigidity of the substrate.
- Published
- 2024
- Full Text
- View/download PDF
43. Probing transient copper chaperone-Wilson protein interactions at the single-molecule level with nanovesicle trapping
- Author
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Benitez, Jaime J., Keller, Aaron M., Ochieng, Patrick, Yatsunyk, Liliya A., Huffman, David L., Rosenzweig, Amy C., and Peng Chen
- Subjects
Molecular chaperones -- Research ,Protein-protein interactions -- Research ,Energy transformation -- Analysis ,Chemistry - Abstract
Nanovesicle trapping and single-molecule fluorescence resonance energy transfer (smFRET) measurements are used for probing the transient interactions between Hah1 and the fourth metal-binding domains (MBD4) of Wilson disease protein (WDP) in real time. The single-molecule approach has offered a means to detect the [Cu.sup.1} transfer process and identify the productive interaction complex.
- Published
- 2008
44. Design of an emission ratiometric biosensor from MerR family proteins: A sensitive and selective sensor for [Hg.sup.2+]
- Author
-
Wegner, Seraphine V., Okesli, Ayse, Peng Chen, and Chuan He
- Subjects
Biosensors -- Usage ,Protein metabolism -- Research ,Metal ions -- Chemical properties ,Chemistry - Abstract
A demonstration that pyrene excimer incorporated into duplex DNA significantly helps to study the protein-DNA interactions is presented. This approach could be duplicated in other members of this protein family to enable the construction of sensitive and selective biosensors for other metal ions and organic molecules.
- Published
- 2007
45. Size-dependent catalytic activity and dynamics of gold nanoparticles at the single-molecule level
- Author
-
Weilin Xu, Peng Chen, Guokun Liu, Debashis Panda, and Xiaochun Zhou
- Subjects
Chemistry ,Nanoparticle ,General Chemistry ,Heterogeneous catalysis ,Biochemistry ,Catalysis ,Dissociation (chemistry) ,Nanomaterial-based catalyst ,Colloid and Surface Chemistry ,Adsorption ,Chemical physics ,Physical chemistry ,Molecule ,Particle size - Abstract
Nanoparticles are important catalysts for petroleum processing, energy conversion, and pollutant removal. As compared to their bulk counterparts, their often superior or new catalytic properties result from their nanometer size, which gives them increased surface-to-volume ratios and chemical potentials. The size of nanoparticles is thus pivotal for their catalytic properties. Here, we use single-molecule fluorescence microscopy to study the size-dependent catalytic activity and dynamics of spherical Au-nanoparticles under ambient solution conditions. By monitoring the catalysis of individual Au-nanoparticles of three different sizes in real time with single-turnover resolution, we observe clear size-dependent activities in both the catalytic product formation reaction and the product dissociation reaction. Within a model of classical thermodynamics, these size-dependent activities of Au-nanoparticles can be accounted for by the changes in the adsorption free energies of the substrate resazurin and the product resorufin because of the nanosize effect. We also observe size-dependent differential selectivity of the Au-nanoparticles between two parallel product dissociation pathways, with larger nanoparticles less selective between the two pathways. The particle size also strongly influences the surface-restructuring-coupled catalytic dynamics; both the catalysis-induced and the spontaneous dynamic surface restructuring occur more readily for smaller Au-nanoparticles due to their higher surface energies. Using a simple thermodynamic model, we analyze the catalysis- and size-dependent dynamic surface restructuring quantitatively; the results provide estimates on the activation energies and time scales of spontaneous dynamic surface restructuring that are fundamental to heterogeneous catalysis in both the nano- and the macro-scale. This study further exemplifies the power of the single-molecule approach in probing the intricate workings of nanoscale catalysts.
- Published
- 2009
46. Spectroscopic insights into lead(II) coordination by the selective lead(II)-binding protein PbrR691
- Author
-
Erik C. Wasinger, Peng Chen, Daniel Van Der Lelie, Jing Zhao, Lin X. Chen, and Chuan He
- Subjects
Molecular Structure ,Chemistry ,Binding protein ,Metal ions in aqueous solution ,Inorganic chemistry ,General Chemistry ,Ralstonia ,Biochemistry ,Combinatorial chemistry ,Catalysis ,Colloid and Surface Chemistry ,Lead (geology) ,Bacterial Proteins ,Lead ,Spectrophotometry ,Carrier Proteins - Abstract
A lead(II)-specific binding protein PbrR691 uses a hemidirected geometry to selectively recognize lead(II) over other metal ions.
- Published
- 2007
47. Oxygen activation by the noncoupled binuclear copper site in peptidylglycine alpha-hydroxylating monooxygenase. Reaction mechanism and role of the noncoupled nature of the active site
- Author
-
Peng Chen and Edward I. Solomon
- Subjects
Models, Molecular ,Reaction mechanism ,Stereochemistry ,Hydrogen atom abstraction ,Biochemistry ,Medicinal chemistry ,Catalysis ,Mixed Function Oxygenases ,Electron transfer ,Colloid and Surface Chemistry ,Multienzyme Complexes ,Reactivity (chemistry) ,Binding Sites ,biology ,Chemistry ,Ligand ,Active site ,Substrate (chemistry) ,Computational Biology ,General Chemistry ,Oxygen ,Models, Chemical ,biology.protein ,Thermodynamics ,Copper - Abstract
Reaction thermodynamics and potential energy surfaces are calculated using density functional methods to investigate possible reactive Cu/O(2) species for H-atom abstraction in peptidylglycine alpha-hydroxylating monooxygenase (PHM), which has a noncoupled binuclear Cu active site. Two possible mononuclear Cu/O(2) species have been evaluated, the 2-electron reduced Cu(II)(M)-OOH intermediate and the 1-electron reduced side-on Cu(II)(M)-superoxo intermediate, which could form with comparable thermodynamics at the catalytic Cu(M) site. The substrate H-atom abstraction reaction by the Cu(II)(M)-OOH intermediate is found to be thermodynamically accessible due to the contribution of the methionine ligand, but with a high activation barrier ( approximately 37 kcal/mol, at a 3.0-A active site/substrate distance), arguing against the Cu(II)(M)-OOH species as the reactive Cu/O(2) intermediate in PHM. In contrast, H-atom abstraction from substrate by the side-on Cu(II)(M)-superoxo intermediate is a nearly isoenergetic process with a low reaction barrier at a comparable active site/substrate distance ( approximately 14 kcal/mol), suggesting that side-on Cu(II)(M)-superoxo is the reactive species in PHM. The differential reactivities of the Cu(II)(M)-OOH and Cu(II)(M)-superoxo species correlate to their different frontier molecular orbitals involved in the H-atom abstraction reaction. After the H-atom abstraction, a reasonable pathway for substrate hydroxylation involves a "water-assisted" direct OH transfer to the substrate radical, which generates a high-energy Cu(II)(M)-oxyl species. This provides the necessary driving force for intramolecular electron transfer from the Cu(H) site to complete the reaction in PHM. The differential reactivity pattern between the Cu(II)(M)-OOH and Cu(II)(M)-superoxo intermediates provides insight into the role of the noncoupled nature of PHM and dopamine beta-monooxygenase active sites, as compared to the coupled binuclear Cu active sites in hemocyanin, tyrosinase, and catechol oxidase, in O(2) activation.
- Published
- 2004
48. Spectroscopic and electronic structure studies of the diamagnetic side-on CuII-superoxo complex Cu(O2)[HB(3-R-5-iPrpz)3]: antiferromagnetic coupling versus covalent delocalization
- Author
-
Cecelia Campochiaro, Peng Chen, Edward I. Solomon, Kiyoshi Fujisawa, and David E. Root
- Subjects
Models, Molecular ,Spin polarization ,Spectrophotometry, Infrared ,Stereochemistry ,Chemistry ,Diradical ,General Chemistry ,Electronic structure ,Biochemistry ,Catalysis ,Crystallography ,Delocalized electron ,Magnetics ,Colloid and Surface Chemistry ,Models, Chemical ,Superoxides ,Singlet fission ,Organometallic Compounds ,Diamagnetism ,Singlet state ,Triplet state ,Copper - Abstract
Magnetic, vibrational, and optical techniques are combined with density functional calculations to elucidate the electronic structure of the diamagnetic mononuclear side-on CuII-superoxo complex. The electronic nature of its lowest singlet/triplet states and the ground-state diamagnetism are explored. The triplet state is found to involve the interaction between the Cu xy and the superoxide pi v * orbitals, which are orthogonal to each other. The singlet ground state involves the interaction between the Cu xy and the in-plane superoxide pi v * orbitals, which have a large overlap and thus strong bonding. The ground-state singlet/triplet states are therefore fundamentally different in orbital origin and not appropriately described by an exchange model. The ground-state singlet is highly delocalized with no spin polarization.
- Published
- 2003
49. Electronic structure description of the mu(4)-sulfide bridged tetranuclear Cu(Z) center in N(2)O reductase
- Author
-
Isabel Moura, José J. G. Moura, Keith O. Hodgson, Britt Hedman, William E. Antholine, Edward I. Solomon, Serena De Beer George, Ines Cabrito, and Peng Chen
- Subjects
chemistry.chemical_classification ,Spin states ,Sulfide ,Molecular Structure ,Chemistry ,Circular Dichroism ,Electron Spin Resonance Spectroscopy ,Spectrometry, X-Ray Emission ,Nitrous-oxide reductase ,General Chemistry ,Electronic structure ,Sulfides ,Biochemistry ,Catalysis ,Crystallography ,Colloid and Surface Chemistry ,Superexchange ,Molecule ,Condensed Matter::Strongly Correlated Electrons ,Atomic physics ,Spectroscopy ,Ground state ,Oxidoreductases ,Copper - Abstract
Spectroscopy coupled with density functional calculations has been used to define the spin state, oxidation states, spin distribution, and ground state wave function of the mu4-sulfide bridged tetranuclear CuZ cluster of nitrous oxide reductase. Initial insight into the electronic contribution to N2O reduction is developed, which involves a sigma superexchange pathway through the bridging sulfide.
- Published
- 2002
50. Probing Transient Copper Chaperone−Wilson Disease Protein Interactions at the Single-Molecule Level with Nanovesicle Trapping
- Author
-
Aaron M. Keller, Amy C. Rosenzweig, David L. Huffman, Jaime J. Benítez, Liliya A. Yatsunyk, Patrick Ochieng, and Peng Chen
- Subjects
Models, Molecular ,Time Factors ,chemistry.chemical_element ,Trapping ,Plasma protein binding ,Biochemistry ,Article ,Catalysis ,Chemical society ,Protein–protein interaction ,Colloid and Surface Chemistry ,Fluorescence Resonance Energy Transfer ,Molecule ,Cation Transport Proteins ,Adenosine Triphosphatases ,biology ,Chemistry ,General Chemistry ,Wilson disease protein ,Copper ,Nanostructures ,Transport protein ,Förster resonance energy transfer ,Copper-Transporting ATPases ,Chaperone (protein) ,Biophysics ,biology.protein ,Target protein ,Molecular Chaperones ,Protein Binding - Abstract
Transient metallochaperone−target protein interactions are essential for intracellular metal trafficking but challenging to study at both the ensemble and the single-molecule level. Here we report using nanovesicle trapping to enable single-molecule fluorescence resonance energy transfer (smFRET) studies of transient interactions between the copper chaperone Hah1 and the fourth metal-binding domain of its target protein, the Wilson disease protein (WDP). We were able to monitor their interactions in real time one event at a time, capture distinct protein interaction intermediates, resolve intermediate interconversion dynamics, and quantify both the interaction kinetics and thermodynamics in the absence of copper. The study exemplifies the ability of nanovesicle trapping in combination with smFRET for studying weak protein interactions and provides insight into how Hah1 and WDP may collaborate to mediate copper transfer inside cells.
- Published
- 2008
- Full Text
- View/download PDF
Catalog
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