18 results on '"De Ming Yang"'
Search Results
2. Development and optimization of heavy metal lead biosensors in biomedical and environmental applications
- Author
-
De Ming Yang, Chia-Lin Wang, Yu-Fen Chang, Wei-Qun Lai, and Tai-Jay Chang
- Subjects
medicine.diagnostic_test ,Coronavirus disease 2019 (COVID-19) ,Daily intake ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Biosensing Techniques ,General Medicine ,Environment ,World health ,Highly sensitive ,Human health ,Lead ,Environmental chemistry ,Fluorescence Resonance Energy Transfer ,medicine ,Blood lead level ,business ,Biosensor - Abstract
The detrimental impact of the heavy metal lead (Pb) on human health has been studied for years. The fact that Pb impairs human body has been established from countless painful and sad historical events. Nowadays, World Health Organization and many developmental countries have established regulations concerning the use of Pb. Measuring the blood lead level (BLL) is so far the only way to officially evaluate the degree of Pb exposure, but the so-called safety value (10 μg/dL in adults and 5 μg/dL in children) seems unreliable to represent the security checkpoint for children through daily intake of drinking water or physical contact with a lower contaminated level of Pb contents. In general, unsolved mysteries about the Pb toxicological mechanisms still remain. In this review article, we report on the methods to prevent Pb poison for further Pb toxicological research. We establish high-sensitivity Pb monitoring, and also report on the use of fluorescent biosensors such as genetically-encoded fluorescence resonance energy transfer-based biosensors built for various large demands such as the detection of severe acute respiratory syndrome coronavirus 2. We also contribute to the development and optimization of the FRET-based Pb biosensors. Our well-performed version of Met-lead 1.44 M1 has achieved a limit of detection of 10 nM (2 ppb; 0.2 μg/dL) and almost 5-fold in dynamic range (DR) supported for the real practical applications-that is, the in-cell Pb sensing device for blood and blood-related samples, and the Pb environmental detections in vitro. The perspective of our powerful Pb biosensor incorporated with a highly sensitive bio-chip of the portable device for quick Pb measurements will be addressed for further manipulation.
- Published
- 2021
- Full Text
- View/download PDF
3. Pandemic analysis of infection and death correlated with genomic open reading frame 10 mutation in severe acute respiratory syndrome coronavirus 2 victims
- Author
-
Pin-Hsing Tsai, De Ming Yang, Yueh Chien, Mong Lien Wang, Fan-Chi Lin, Tai-Jay Chang, and Yi-Ping Yang
- Subjects
Mutation rate ,biology ,SARS-CoV-2 ,business.industry ,Mortality rate ,COVID-19 ,RNA virus ,General Medicine ,030204 cardiovascular system & hematology ,biology.organism_classification ,Genome ,Virology ,Open Reading Frames ,03 medical and health sciences ,Open reading frame ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Mutation ,Pandemic ,Mutation (genetic algorithm) ,Mutation testing ,Humans ,Medicine ,business - Abstract
BACKGROUND: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) continues the pandemic spread of the coronavirus disease 2019 (COVID-19), over 60 million people confirmed infected and at least 1.8 million dead. One of the most known features of this RNA virus is its easiness to be mutated. In late 2020, almost no region of this SARS-CoV-2 genome can be found completely conserved within the original Wuhan coronavirus. Any information of the SARS-CoV-2 variants emerged through as time being will be evaluated for diagnosis, treatment, and prevention of COVID-19. METHODS: We extracted more than two million data of SARS-CoV-2 infected patients from the open COVID-19 dashboard. The sequences of the 38-amino acid putative open reading frame 10 (Orf10) protein within infected patients were gathered output through from National Center for Biotechnology Information and the mutation rates in each position were analyzed and presented in each month of 2020. The mutation rates of A8 and V30 within Orf10 are displayed in selected counties: United States, India, German, and Japan. RESULTS: The numbers of COVID-19 patients are correlated to the death numbers, but not with the death rates (stable and
- Published
- 2021
- Full Text
- View/download PDF
4. Genomic variance of Open Reading Frames (ORFs) and Spike protein in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
- Author
-
Shih Jie Chou, Mong Lien Wang, Chin Tien Wang, Tai Jay Chang, Kung How Liang, De Ming Yang, Ping Hsing Tsai, Ta Hsien Lin, and Shih Hwa Chiou
- Subjects
Genome, Viral ,030204 cardiovascular system & hematology ,Genome ,Virus ,Genomic analysis ,Betacoronavirus ,Open Reading Frames ,03 medical and health sciences ,0302 clinical medicine ,Viral envelope ,Phylogenetics ,Severe acute respiratory syndrome coronavirus 2 ,Humans ,Point Mutation ,Medicine ,ORFS ,Phylogeny ,Sequence (medicine) ,Genetics ,Multiple sequence ,SARS-CoV-2 ,business.industry ,RNA ,Original Articles ,General Medicine ,030220 oncology & carcinogenesis ,GenBank ,Spike Glycoprotein, Coronavirus ,business - Abstract
Background: The outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused severe pneumonia at December 2019. Since then, it has been wildly spread from Wuhan, China, to Asia, European, and United States to become the pandemic worldwide. Now coronavirus disease 2019 were globally diagnosed over 3 084 740 cases with mortality of 212 561 toll. Current reports variants are found in SARS-CoV-2, majoring in functional ribonucleic acid (RNA) to transcribe into structural proteins as transmembrane spike (S) glycoprotein and the nucleocapsid (N) protein holds the virus RNA genome; the envelope (E) and membrane (M) alone with spike protein form viral envelope. The nonstructural RNA genome includes ORF1ab, ORF3, ORF6, 7a, 8, and ORF10 with highly conserved information for genome synthesis and replication in ORF1ab. Methods: We apply genomic alignment analysis to observe SARS-CoV-2 sequences from GenBank (http://www.ncbi.nim.nih.gov/genebank/): MN 908947 (China, C1); MN985325 (United States: WA, UW); MN996527 (China, C2); MT007544 (Australia: Victoria, A1); MT027064 (United States: CA, UC); MT039890 (South Korea, K1); MT066175 (Taiwan, T1); MT066176 (Taiwan, T2); LC528232 (Japan, J1); and LC528233 (Japan, J2) and Global Initiative on Sharing All Influenza Data database (https://www.gisaid.org). We adopt Multiple Sequence Alignments web from Clustalw (https://www.genome.jp/tools-bin/clustalw) and Geneious web (https://www.geneious.com. Results: We analyze database by genome alignment search for nonstructural ORFs and structural E, M, N, and S proteins. Mutations in ORF1ab, ORF3, and ORF6 are observed; specific variants in spike region are detected. Conclusion: We perform genomic analysis and comparative multiple sequence of SARS-CoV-2. Large scaling sequence alignments trace to localize and catch different mutant strains in United possibly to transmit severe deadly threat to humans. Studies about the biological symptom of SARS-CoV-2 in clinic animal and humans will be applied and manipulated to find mechanisms and shield the light for understanding the origin of pandemic crisis.
- Published
- 2020
- Full Text
- View/download PDF
5. Genomic analysis and comparative multiple sequences of SARS-CoV2
- Author
-
Kung-How Liang, Chin-Tien Wang, Shih Hwa Chiou, Mong Lien Wang, Ta Hsien Lin, Ping-Hsing Tsai, De Ming Yang, and Tai-Jay Chang
- Subjects
Genetics ,Multiple sequence alignment ,business.industry ,Outbreak ,Sequence alignment ,Single-nucleotide polymorphism ,General Medicine ,030204 cardiovascular system & hematology ,medicine.disease_cause ,Genome ,03 medical and health sciences ,0302 clinical medicine ,030220 oncology & carcinogenesis ,GenBank ,medicine ,business ,Coronavirus ,Sequence (medicine) - Abstract
BACKGROUND: China announced an outbreak of new coronavirus in the city of Wuhan on December 31, 2019; lash to now, the virus transmission has become pandemic worldwide. Severe cases from the Huanan Seafood Wholesale market in Wuhan were confirmed pneumonia with a novel coronavirus (2019-nCoV). Understanding the molecular mechanisms of genome selection and packaging is critical for developing antiviral strategies. Thus, we defined the correlation in 10 severe acute respiratory syndrome coronavirus (SARS-CoV2) sequences from different countries to analyze the genomic patterns of disease origin and evolution aiming for developing new control pandemic processes. METHODS: We apply genomic analysis to observe SARS-CoV2 sequences from GenBank (http://www.ncbi.nim.nih.gov/genebank/): MN 908947 (China, C1), MN985325 (USA: WA, UW), MN996527 (China, C2), MT007544 (Australia: Victoria, A1), MT027064 (USA: CA, UC), MT039890 (South Korea, K1), MT066175 (Taiwan, T1), MT066176 (Taiwan, T2), LC528232 (Japan, J1), and LC528233 (Japan, J2) for genomic sequence alignment analysis. Multiple Sequence Alignment by Clustalw (https://www.genome.jp/tools-bin/clustalw) web service is applied as our alignment tool. RESULTS: We analyzed 10 sequences from the National Center for Biotechnology Information (NCBI) database by genome alignment and found no difference in amino acid sequences within M and N proteins. There are two amino acid variances in the spike (S) protein region. One mutation found from the South Korea sequence is verified. Two possible "L" and "S" SNPs found in ORF1ab and ORF8 regions are detected. CONCLUSION: We performed genomic analysis and comparative multiple sequences of SARS-CoV2. Studies about the biological symptoms of SARS-CoV2 in clinic animals and humans will manipulate an understanding on the origin of pandemic crisis.
- Published
- 2020
- Full Text
- View/download PDF
6. Combinatorial roles of mitochondria and cGMP/PKG pathway in the generation of neuronal free Zn2+ under the presence of nitric oxide
- Author
-
Chien-Chang Huang, Yu-Fen Chang, and De Ming Yang
- Subjects
030204 cardiovascular system & hematology ,Mitochondrion ,Nitric Oxide ,PC12 Cells ,Nitric oxide ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,KATP Channels ,Cyclic GMP-Dependent Protein Kinases ,Animals ,Medicine ,Cyclic GMP ,Neurons ,Kinase ,business.industry ,General Medicine ,In vitro ,Potassium channel ,Mitochondria ,Rats ,Cell biology ,Zinc ,chemistry ,030220 oncology & carcinogenesis ,Molecular mechanism ,business ,Function (biology) - Abstract
Background Nitric oxide (NO), which possesses both protective and toxic properties, has been observed to have a complicated biphasic character within various types of tissues, including neuronal cells. NO was also found to cause the increase of another important signaling molecular Zn (termed as NZR). The molecular mechanism of NZR has been extensively investigated, but the source of Zn is present of a major candidate that is yet to be answered. The NO-protein kinase G (PKG) pathway, mitochondria, and metallothioneins (MTs), are all proposed to be the individual source of NZR. However, this hypothesis remains inconclusive. In this study, we examined the function of PKG signaling cascades, the mitochondria storage, and MT-1 during NZR of living PC12 cells. Methods We applied live-cell imaging in combination with pharmacological inhibitors and activators as well as in vitro Zn assay to dissect the functions of the above candidates in NZR. Results Two mechanisms, namely, mitochondria as the only Zn source and the opening of NO-PKG-dependent mitochondrial ATP-sensitive potassium channels (mKATP) as the key to releasing NO-induced increase in mitochondrial Zn, were proven to be the two critical paths of NZR in neuronal-related cells. Conclusion This new finding provides a reasonable explanation to previously existing and contradictory conclusions regarding the function of mitochondria/mKATP and PKG signaling on the molecular mechanism of NZR.
- Published
- 2020
- Full Text
- View/download PDF
7. Smart healthcare: A prospective future medical approach for COVID-19.
- Author
-
De-Ming Yang, Tai-Jay Chang, Kai-Feng Hung, Mong-Lien Wang, Yen-Fu Cheng, Su-Hua Chiang, Mei-Fang Chen, Yi-Ting Liao, Wei-Qun Lai, and Kung-Hao Liang
- Subjects
SARS-CoV-2 ,INTERNET pharmacies ,COVID-19 ,MEDICAL telematics ,POST-acute COVID-19 syndrome - Abstract
COVID-19 has greatly affected human life for over 3 years. In this review, we focus on smart healthcare solutions that address major requirements for coping with the COVID-19 pandemic, including (1) the continuous monitoring of severe acute respiratory syndrome coronavirus 2, (2) patient stratification with distinct short-term outcomes (eg, mild or severe diseases) and long-term outcomes (eg, long COVID), and (3) adherence to medication and treatments for patients with COVID-19. Smart healthcare often utilizes medical artificial intelligence (AI) and cloud computing and integrates cutting-edge biological and optoelectronic techniques. These are valuable technologies for addressing the unmet needs in the management of COVID. By leveraging deep learning/machine learning capabilities and big data, medical AI can perform precise prognosis predictions and provide reliable suggestions for physicians' decision-making. Through the assistance of the Internet of Medical Things, which encompasses wearable devices, smartphone apps, internet-based drug delivery systems, and telemedicine technologies, the status of mild cases can be continuously monitored and medications provided at home without the need for hospital care. In cases that develop into severe cases, emergency feedback can be provided through the hospital for rapid treatment. Smart healthcare can possibly prevent the development of severe COVID-19 cases and therefore lower the burden on intensive care units. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
8. Novel biosensor platforms for the detection of coronavirus infection and severe acute respiratory syndrome coronavirus 2
- Author
-
De Ming Yang, Ping Hsing Tsai, Tai Jay Chang, Ta Hsien Lin, Chin Tien Wang, Kung Hao Liang, and Mong Lien Wang
- Subjects
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,viruses ,Pneumonia, Viral ,Fluorescence resonance energy transfer-based biosensors ,Host response ,Biosensing Techniques ,030204 cardiovascular system & hematology ,Protein–protein interactions ,medicine.disease_cause ,03 medical and health sciences ,Betacoronavirus ,0302 clinical medicine ,Intensive care ,Pandemic ,Real-time reverse transcription polymerase chain reaction/qPCR ,Fluorescence Resonance Energy Transfer ,Medicine ,Humans ,Pandemics ,Review Articles ,Aerosol ,Coronavirus ,Coronavirus disease 2019 ,business.industry ,SARS-CoV-2 ,fungi ,COVID-19 ,food and beverages ,General Medicine ,Virology ,Ambient air ,030220 oncology & carcinogenesis ,Severe acute respiratory syndrome coronavirus 2/2019-nCov ,business ,Coronavirus Infections ,Biosensor ,Signal amplification - Abstract
The recent outbreak of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has been causing respiratory diseases globally, damaging wide ranges of social-economic activities. This virus is transmitted through personal contact and possibly also through ambient air. Effective biosensor platforms for the detection of this virus and the related host response are in urgent demand. These platforms can facilitate routine diagnostic assays in certified clinical laboratories. They can also be integrated into point-of-care products. Furthermore, environmental biosensors can be designed to detect SARS-CoV-2 in the ambient air or in the intensive care ventilators. Here, we evaluate technical components of biosensors, including the biological targets of recognition, the recognition methods, and the signal amplification and transduction systems. Effective SARS-CoV-2 detectors can be designed by an adequate combination of these technologies.
- Published
- 2020
9. SARS-CoV-2 vaccines in children and adolescents: Can immunization prevent hospitalization?
- Author
-
Kung-Hao Liang, Kai-Feng Hung, Mong-Lien Wang, Tai-Jay Chang, Yen-Fu Cheng, Su-Hua Chiang, Mei-Fang Chen, Yi-Ting Liao, Shih-Hwa Chiou, and De-Ming Yang
- Subjects
SARS-CoV-2 ,COVID-19 vaccines ,VACCINATION of children ,VACCINATION complications - Abstract
The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and its variants of concern can infect people of all ages and can cause severe diseases in children, such as encephalitis, which require intensive care. Therefore, vaccines are urgently required to prevent severe disease in all age groups. We reviewed the safety and efficacy profiles of mRNA vaccines--BNT162b2 and mRNA-1273--demonstrated by clinical trials or observed in the real world. mRNA-1273 is effective in preventing SARS-CoV-2 infection in preschool children (6 months-6 years old). Both BNT162b2 and mRNA-1273 are effective in preventing SARS-CoV-2 infection in school-aged children and adolescents, thereby preventing post-coronavirus disease (COVID) conditions. The common side effects of vaccination are pain at the injection site, fatigue, and headache. Myocarditis and pericarditis are uncommon. Monitoring post-vaccination troponin levels may help prevent severe cardiac events. The SARS-CoV-2 coronavirus mutates its genome to overcome the herd immunity provided by mass vaccinations; therefore, we may need to develop new generations of vaccines, such as those using viral nucleocapsid proteins as antigens. In conclusion, the mRNA vaccines are generally safe and effective in preventing severe diseases and hospitalization among children and adolescents. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
10. Hunting severe acute respiratory syndrome coronavirus 2 (2019 novel coronavirus): From laboratory testing back to basic research
- Author
-
Ping Hsing Tsai, Chin Tien Wang, Mong Lien Wang, Kung Hao Liang, Tai Jay Chang, Ta Hsien Lin, and De Ming Yang
- Subjects
Coronavirus disease 2019 (COVID-19) ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Clusters of regularly interspaced short palindromic repeats ,Routine laboratory tests ,030204 cardiovascular system & hematology ,Virus ,03 medical and health sciences ,0302 clinical medicine ,Pandemic ,Medicine ,Severe acute respiratory syndrome coronavirus 2/2019 novel coronavirus ,Real-time reverse transcription polymerase chain reaction/quantitative polymerase chain reaction ,Special Invitation ,Virus detection ,biology ,business.industry ,Rapid diagnostic tests ,General Medicine ,biology.organism_classification ,medicine.disease ,Virology ,Fluorescence resonance energy transfer biosensing ,Reverse transcription polymerase chain reaction ,Real-time polymerase chain reaction ,030220 oncology & carcinogenesis ,business ,Pneumonia (non-human) ,Betacoronavirus - Abstract
The rapid spread of coronavirus disease 2019 (COVID-19) in many countries causes citizens of daily inconvenience and even life-threat for elderly population. The invasion of the main pathogen, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2; 2019 novel coronavirus [2019-nCoV]), into human body causes different levels of impact to various patients. One of the most important issues for COVID-19 is how to defend this virus with the ability to foresee the infected targets. Thus, we maintain the quarantined essentially as for as others saved from COVID-19. So far, the routine laboratory test to confirm whether infected by SARS-CoV-2/2019-nCoV or not is through real-time reverse transcription polymerase chain reaction (rRT-PCR; quantitative polymerase chain reaction [qPCR]) with certain sequence regions that recognize SARS-CoV-2/2019-nCoV RNA genome. The heavy loading of rRT-PCR (qPCR) machine and handling labor have tight-packed the instruments as well as the manpower almost in every country. Therefore, the alternative approaches are eagerly waiting to be developed. In this review article, we sort out some state-of-the-art novel approaches that might be applied for a fast, sensitive, and precise detection of SARS-CoV-2/2019-nCoV not only to help the routine laboratory testing but also to improve effective quarantine.
- Published
- 2020
- Full Text
- View/download PDF
11. The Omicron variant wave: Where are we now and what are the prospects?
- Author
-
Mong-Lien Wang, Yang Lin, Ju-Fen Hou, Yi-Ping Yang, Yueh Chien, Yi-Chen Sun, Kung-Hao Liang, De-Ming Yang, Tai-Jay Chang, Cheng-Hsien Wu, Shou-Yen Kao, and Kai-Feng Hung
- Subjects
SARS-CoV-2 ,SARS-CoV-2 Omicron variant ,BOOSTER vaccines ,VACCINATION status - Abstract
The Omicron variant BA.2 is the dominant form of the severe acute respiratory syndrome coronavirus 2 (SARS- N CoV-2) outbreak in many countries, including those that have already implemented the strictest quarantine mandates that effectively contained the spread of the previous variants. Although many individuals were partially or fully vaccinated, confirmed Omicron infections have far surpassed all other variants combined in just a couple of months since the Omicron variant emerged. The ChAdOx1-S (AstraZeneca), BNT162b2 (Pfizer-BioNTech), and mRNA-1273 (Moderna) vaccines offer protection against the severe illness of SARS-CoV-2 infection; however, these currently available vaccines are less effective in terms of preventing Omicron infections. As a result, a booster dose of BNT162b2 or mRNA-1273 is recommended for individuals >12 years old who had received their second dose of the approved vaccines for >5 months. Herein, we review the studies that assessed the clinical benefits of the booster dose of vaccines against Omicron infections. We also analyzed public data to address whether early booster vaccination effectively prevented the surge of the Omicron infections. Finally, we discuss the consideration of a fourth dose of vaccine as a way to prevent possible upcoming infections. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
12. Development and optimization of heavy metal lead biosensors in biomedical and environmental applications.
- Author
-
Tai-Jay Chang, Wei-Qun Lai, Yu-Fen Chang, Chia-Lin Wang, and De-Ming Yang
- Subjects
LEAD ,SARS-CoV-2 ,AMPLIFICATION reactions ,BIOELECTRONICS ,HEAVY metals ,BIOSENSORS ,LEAD exposure ,SOFT drinks - Abstract
The detrimental impact of the heavy metal lead (Pb) on human health has been studied for years. The fact that Pb impairs human body has been established from countless painful and sad historical events. Nowadays, World Health Organization and many developmental countries have established regulations concerning the use of Pb. Measuring the blood lead level (BLL) is so far the only way to officially evaluate the degree of Pb exposure, but the so-called safety value (10 µg/dL in adults and 5 µg/dL in children) seems unreliable to represent the security checkpoint for children through daily intake of drinking water or physical contact with a lower contaminated level of Pb contents. In general, unsolved mysteries about the Pb toxicological mechanisms still remain. In this review article, we report on the methods to prevent Pb poison for further Pb toxicological research. We establish high-sensitivity Pb monitoring, and also report on the use of fluorescent biosensors such as genetically-encoded fluorescence resonance energy transfer-based biosensors built for various large demands such as the detection of severe acute respiratory syndrome coronavirus 2. We also contribute to the development and optimization of the FRET-based Pb biosensors. Our well-performed version of Met-lead 1.44 M1 has achieved a limit of detection of 10 nM (2 ppb; 0.2 µg/dL) and almost 5-fold in dynamic range (DR) supported for the real practical applications--that is, the in-cell Pb sensing device for blood and blood-related samples, and the Pb environmental detections in vitro. The perspective of our powerful Pb biosensor incorporated with a highly sensitive bio-chip of the portable device for quick Pb measurements will be addressed for further manipulation. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
13. Pandemic analysis of infection and death correlated with genomic open reading frame 10 mutation in severe acute respiratory syndrome coronavirus 2 victims.
- Author
-
De-Ming Yang, Fan-Chi Lin, Pin-Hsing Tsai, Yueh Chien, Mong-Lien Wang, Yi-Ping Yang, and Tai-Jay Chan
- Subjects
COVID-19 pandemic ,COVID-19 ,SARS-CoV-2 ,PANDEMICS ,PROTEIN-protein interactions - Abstract
Background: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) continues the pandemic spread of the coronavirus disease 2019 (COVID-19), over 60 million people confirmed infected and at least 1.8 million dead. One of the most known features of this RNA virus is its easiness to be mutated. In late 2020, almost no region of this SARS-CoV-2 genome can be found completely conserved within the original Wuhan coronavirus. Any information of the SARS-CoV-2 variants emerged through as time being will be evaluated for diagnosis, treatment, and prevention of COVID-19. Methods: We extracted more than two million data of SARS-CoV-2 infected patients from the open COVID-19 dashboard. The sequences of the 38-amino acid putative open reading frame 10 (Orf10) protein within infected patients were gathered output through from National Center for Biotechnology Information and the mutation rates in each position were analyzed and presented in each month of 2020. The mutation rates of A8 and V30 within Orf10 are displayed in selected counties: United States, India, German, and Japan. Results: The numbers of COVID-19 patients are correlated to the death numbers, but not with the death rates (stable and <3%). The amino acid positions locating at A8(F/G/L), I13, and V30(L) within the Orf10 sequence stay the highest mutation rate; N5, N25, and N36 rank at the lowest one. A8F expressed highly dominant in Japan (over 80%) and German (around 40%) coming to the end of 2020, but no significant finding in other countries. Conclusion: The results demonstrate via mutation analysis of Orf10 can be further combined with advanced tools such as molecular simulation, artificial intelligence, and biosensors that can practically revealed for protein interactions and thus to imply the authentic Orf10 function of SARS-CoV-2 in the future. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
14. Genomic variance of Open Reading Frames (ORFs) and Spike protein in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
- Author
-
Ping-Hsing Tsai, Mong-Lien Wang, De-Ming Yang, Kung-How Liang, Shih-Jie Chou, Shih-Hwa Chiou, Ta-Hsien Lin, Chin-Tien Wang, and Tai-Jay Chang
- Subjects
SARS-CoV-2 ,COVID-19 ,VIRAL envelope proteins ,COVID-19 pandemic ,RNA viruses ,GENOMICS - Abstract
Background: The outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused severe pneumonia at December 2019. Since then, it has been wildly spread from Wuhan, China, to Asia, European, and United States to become the pandemic worldwide. Now coronavirus disease 2019 were globally diagnosed over 3 084 740 cases with mortality of 212 561 toll. Current reports variants are found in SARS-CoV-2, majoring in functional ribonucleic acid (RNA) to transcribe into structural proteins as transmembrane spike (S) glycoprotein and the nucleocapsid (N) protein holds the virus RNA genome; the envelope (E) and membrane (M) alone with spike protein form viral envelope. The nonstructural RNA genome includes ORF1ab, ORF3, ORF6, 7a, 8, and ORF10 with highly conserved information for genome synthesis and replication in ORF1ab. Methods: We apply genomic alignment analysis to observe SARS-CoV-2 sequences from GenBank (http:// www.ncbi.nim.nih. gov/genebank/): MN 908947 (China, C1); MN985325 (United States: WA, UW); MN996527 (China, C2); MT007544 (Australia: Victoria, A1); MT027064 (United States: CA, UC); MT039890 (South Korea, K1); MT066175 (Taiwan, T1); MT066176 (Taiwan, T2); LC528232 (Japan, J1); and LC528233 (Japan, J2) and Global Initiative on Sharing All Influenza Data database (https://www.gisaid. org). We adopt Multiple Sequence Alignments web from Clustalw (https://www.genome.jp/tools-bin/clustalw) and Geneious web (https://www.geneious.com. Results: We analyze database by genome alignment search for nonstructural ORFs and structural E, M, N, and S proteins. Mutations in ORF1ab, ORF3, and ORF6 are observed; specific variants in spike region are detected. Conclusion: We perform genomic analysis and comparative multiple sequence of SARS-CoV-2. Large scaling sequence alignments trace to localize and catch different mutant strains in United possibly to transmit severe deadly threat to humans. Studies about the biological symptom of SARS-CoV-2 in clinic animal and humans will be applied and manipulated to find mechanisms and shield the light for understanding the origin of pandemic crisis. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
15. Genomic analysis and comparative multiple sequences of SARS-CoV2.
- Author
-
Tai-Jay Chang, De-Ming Yang, Mong-Lien Wang, Kung-How Liang, Ping-Hsing Tsai, Shih-Hwa Chiou, Ta-Hsien Lin, and Chin-Tien Wang
- Subjects
SARS-CoV-2 ,AMINO acid sequence ,COVID-19 ,COVID-19 pandemic ,SEQUENCE alignment - Abstract
Background: China announced an outbreak of new coronavirus in the city of Wuhan on December 31, 2019; lash to now, the virus transmission has become pandemic worldwide. Severe cases from the Huanan Seafood Wholesale market in Wuhan were confirmed pneumonia with a novel coronavirus (2019-nCoV). Understanding the molecular mechanisms of genome selection and packaging is critical for developing antiviral strategies. Thus, we defined the correlation in 10 severe acute respiratory syndrome coronavirus (SARS-CoV2) sequences from different countries to analyze the genomic patterns of disease origin and evolution aiming for developing new control pandemic processes. Methods: We apply genomic analysis to observe SARS-CoV2 sequences from GenBank (http://www.ncbi.nim.nih.gov/genebank/): MN 908947 (China, C1), MN985325 (USA: WA, UW), MN996527 (China, C2), MT007544 (Australia: Victoria, A1), MT027064 (USA: CA, UC), MT039890 (South Korea, K1), MT066175 (Taiwan, T1), MT066176 (Taiwan, T2), LC528232 (Japan, J1), and LC528233 (Japan, J2) for genomic sequence alignment analysis. Multiple Sequence Alignment by Clustalw (https://www. genome.jp/tools-bin/clustalw) web service is applied as our alignment tool. Results: We analyzed 10 sequences from the National Center for Biotechnology Information (NCBI) database by genome alignment and found no difference in amino acid sequences within M and N proteins. There are two amino acid variances in the spike (S) protein region. One mutation found from the South Korea sequence is verified. Two possible "L" and "S" SNPs found in ORF1ab and ORF8 regions are detected. Conclusion: We performed genomic analysis and comparative multiple sequences of SARS-CoV2. Studies about the biological symptoms of SARS-CoV2 in clinic animals and humans will manipulate an understanding on the origin of pandemic crisis. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
16. Combinatorial roles of mitochondria and cGMP/PKG pathway in the generation of neuronal free Zn2+ under the presence of nitric oxide.
- Author
-
De-Ming Yang, Chien-Chang Huang, and Yu-Fen Chang
- Subjects
POTASSIUM channels ,MITOCHONDRIA ,NITRIC oxide - Abstract
Background: Nitric oxide (NO), which possesses both protective and toxic properties, has been observed to have a complicated biphasic character within various types of tissues, including neuronal cells. NO was also found to cause the increase of another important signaling molecular Zn
2+ (termed as NZR). The molecular mechanism of NZR has been extensively investigated, but the source of Zn2+ is present of a major candidate that is yet to be answered. The NO-protein kinase G (PKG) pathway, mitochondria, and metallothioneins (MTs), are all proposed to be the individual source of NZR. However, this hypothesis remains inconclusive. In this study, we examined the function of PKG signaling cascades, the mitochondria storage, and MT-1 during NZR of living PC12 cells. Methods: We applied live-cell imaging in combination with pharmacological inhibitors and activators as well as in vitro Zn2+ assay to dissect the functions of the above candidates in NZR. Results: Two mechanisms, namely, mitochondria as the only Zn2+ source and the opening of NO-PKG-dependent mitochondrial ATP-sensitive potassium channels (mKATP ) as the key to releasing NO-induced increase in mitochondrial Zn2+ , were proven to be the two critical paths of NZR in neuronal-related cells. Conclusion: This new finding provides a reasonable explanation to previously existing and contradictory conclusions regarding the function of mitochondria/mKATP and PKG signaling on the molecular mechanism of NZR. [ABSTRACT FROM AUTHOR]- Published
- 2020
- Full Text
- View/download PDF
17. Novel biosensor platforms for the detection of coronavirus infection and severe acute respiratory syndrome coronavirus 2.
- Author
-
Kung-Hao Liang, Tai-Jay Chang, Mong-Lien Wang, Ping-Hsing Tsaig, Ta-Hsien Lin, Chin-Tien Wang, and De-Ming Yang
- Subjects
COVID-19 ,COVID-19 pandemic ,SARS-CoV-2 - Abstract
The recent outbreak of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has been causing respiratory diseases globally, damaging wide ranges of social-economic activities. This virus is transmitted through personal contact and possibly also through ambient air. Effective biosensor platforms for the detection of this virus and the related host response are in urgent demand. These platforms can facilitate routine diagnostic assays in certified clinical laboratories. They can also be integrated into point-of-care products. Furthermore, environmental biosensors can be designed to detect SARS-CoV-2 in the ambient air or in the intensive care ventilators. Here, we evaluate technical components of biosensors, including the biological targets of recognition, the recognition methods, and the signal amplification and transduction systems. Effective SARS-CoV-2 detectors can be designed by an adequate combination of these technologies. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
18. Hunting severe acute respiratory syndrome coronavirus 2 (2019 novel coronavirus): From laboratory testing back to basic research.
- Author
-
De-Ming Yang, Tai-Jay Chang, Mong-Lien Wang, Ping-Hsing Tsai, Ta-Hsien Lin, Chin-Tien Wang, and Kung-Hao Liang
- Subjects
SARS-CoV-2 ,COVID-19 ,REVERSE transcriptase polymerase chain reaction ,COVID-19 pandemic ,TESTING laboratories - Abstract
The rapid spread of coronavirus disease 2019 (COVID-19) in many countries causes citizens of daily inconvenience and even life-threat for elderly population. The invasion of the main pathogen, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2; 2019 novel coronavirus [2019-nCoV]), into human body causes different levels of impact to various patients. One of the most important issues for COVID-19 is how to defend this virus with the ability to foresee the infected targets. Thus, we maintain the quarantined essentially as for as others saved from COVID-19. So far, the routine laboratory test to confirm whether infected by SARS-CoV-2/2019-nCoV or not is through real-time reverse transcription polymerase chain reaction (rRT-PCR; quantitative polymerase chain reaction [qPCR]) with certain sequence regions that recognize SARS-CoV-2/2019-nCoV RNA genome. The heavy loading of rRT-PCR (qPCR) machine and handling labor have tight-packed the instruments as well as the manpower almost in every country. Therefore, the alternative approaches are eagerly waiting to be developed. In this review article, we sort out some state-of-the-art novel approaches that might be applied for a fast, sensitive, and precise detection of SARS-CoV-2/2019- nCoV not only to help the routine laboratory testing but also to improve effective quarantine. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.