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Margaritispora aquatica is an aquatic fungal species found in leaf litter. Here, we report the 42.5-Mb draft genome sequence of M. aquatica strain NNIBRFG339, which comprises 61 scaffolds and has an overall G+C content of 45.77% and an N 50 value of 1.856 Mb., (Copyright © 2019 Goh et al.)

Aquanectria penicillioides is a common aquatic fungal species. Here, we report the 53.7-Mb draft genome sequence of A. penicillioides strain NNIBRFG19, which has an overall G+C content of 47.93%, comprising 13 scaffolds with an N 50 value of 4.932 Mb.

Hymenoscyphus tetracladius (anamorph, Articulospora tetracladia) is a common aquatic hyphomycetous fungus. Here, we report the draft genome sequence of H. tetracladius strain NNIBRFG329, which comprises 41.8 Mb in 20 scaffolds with an overall G+C content of 46.95% and an N 50 value of 3.973 Mb.