21 results on '"Hua-Feng Wang"'
Search Results
2. Complete plastome sequence of
- Author
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Rong-Jia, Mo, Hong-Xin, Wang, Da-Juan, Chen, Zhi-Xin, Zhu, Wang, Qiao, and Hua-Feng, Wang
- Abstract
We report and characterize the complete plastome of
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- 2022
3. Complete plastome sequence from a cultivar of
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Xu, Xin-Xin, Hong-Xin, Wang, Da-Juan, Chen, Xiu-Rong, Ke, Zhi-Xin, Zhu, and Hua-Feng, Wang
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- 2022
4. The complete plastome of
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Li-Da, Chen, Hua-Feng, Wang, and De-Jia, Hou
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- 2022
5. The complete plastome of a cultivar of
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Qi-Liang, Zhou, Zi-Hao, Tan, Hong-Xin, Wang, Da-Juan, Chen, Xiu-Rong, Ke, Zhi-Xin, Zhu, and Hua-Feng, Wang
- Subjects
Lannea coromandelica ,Anacardiaceae ,plastome ,Mitogenome Announcement ,genome structure ,Research Article - Abstract
Lannea coromandelica (Houtt.) Merr. is a deciduous tree in the family Anacardiaceae, which grows in lowland and hill forests; 100–1800 m. SW Guangdong, S Guangxi, S Yunnan [Bhutan, India, Myanmar, Nepal, Sri Lanka; cultivated elsewhere in continental SE Asia, such as in Cambodia, Laos, Malaysia, Thailand, Vietnam, where it is probably naturalized]. The length of the complete plastome is 162,460 bp, including 130 genes consisting of 85 protein-coding genes, 37 tRNA genes and 8 rRNA genes. The assembled plastome has the typical structure and gene content of angiosperms plastome, which includes two inverted repeats (IRs) regions of 26,877 bp, a large single copy (LSC) region of 89,599 bp and a small single-copy (SSC) region of 19,107 bp. The total G/C content in the plastome of L. coromandelica is 37.7%. The complete plastome sequence of L. coromandelica will provide contributions to the conservation genetics of this species as well as to phylogenetic studies in Anacardiaceae.
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- 2021
6. The complete plastome of Garcinia subelliptica, Merr. 1909 (Clusiaceae)
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Pei-Dong Chen, Da-Juan Chen, Xiu-Rong Ke, Zhi-Xin Zhu, and Hua-Feng Wang
- Subjects
complete plastome ,Garcinia subelliptica ,Merr. 1909 ,Clusiaceae ,Genetics ,phylogenetic relationships ,Molecular Biology ,Mitogenome Announcement ,Research Article - Abstract
The complete plastome of G. subelliptica, Merr. 1909. The complete length is 158,356 bp, with the typical structure and gene content of angiosperm plastomes, including a large single-copy region (LSC) of 86,220 bp, a repeat region (IRB), and a reverse repeat region (IRA) of 27,399 bp, respectively, and a small single-copy region (SSC) of 17,338 bp. The plastome contains 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The total G/C content of the plastome is 36.1%.
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- 2022
7. Complete plastome sequence of
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Lin-Yuan, Guo, Xiao-Feng, Zhang, Zhi-Xin, Zhu, and Hua-Feng, Wang
- Subjects
fungi ,Mallotus japonicas ,Balakata baccata ,Euphorbiaceae ,phylogenetic ,plastome ,Mitogenome Announcement ,genome structure ,Research Article - Abstract
Balakata baccata belongs to the family Euphorbiaceae and is distributed in Yunnan province, China, and other southeast Asian countries, e.g., Bangladesh, Cambodia, India, Indonesia, etc. Here, we report and characterize the complete plastome of B. baccata. The complete plastome is 163,988 bp in length and contains a typical quadripartite structure and gene content found in angiosperms, including two inverted repeat (IR) regions of 27,274 bp, a large single-copy (LSC) region of 90,946 bp and a small single-copy (SSC) region of 18,494 bp. The plastome contains 129 genes, consisting of 84 protein-coding genes, 37 tRNA genes, and eight rRNA genes. The overall G/C content in the plastome of B. baccata is 35.6%. Phylogenetic results show that B. baccata is the earliest diverging lineage of Euphorbioideae. Euphorbia helioscopia + E. esula, E. tirucalli + E. milii and B. baccata have a closer phylogenetic relationship than other taxa within Euphorbiaceae. The complete plastome sequence of B. baccata will provide a useful resource for the conservation genetics of this species as well as for phylogenetic studies in Euphorbiaceae.
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- 2021
8. The complete chloroplast genome sequence of a Citrus australasica cultivar (Rutaceae)
- Author
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Qin-Nan Cai, Hong-Xin Wang, Da-Juan Chen, Xiu-Rong Ke, Zhi-Xin Zhu, and Hua-Feng Wang
- Subjects
Citrus australasica ,Genetics ,plastome ,Molecular Biology ,Rutaceae ,Mitogenome Announcement ,genome structure ,Research Article - Abstract
Citrus australasica (F. Muell.) Swingle belongs to the family Rutaceae. Citrus australasica is native to eastern Australia and southeastern New Guinea, and is mainly concentrated in a small region of northern New South Wales and tropical rainforest areas in southern Queensland. The complete plastome length of C. australasica is 160,335 bp, with the typical structure and gene content of angiosperm plastids, including a 26,592 bp repeat B (IRB) region, 26,952 bp IRA, 87,678 bp large single copy (LSC) region and 18,756 bp small single copy (SSC) region. The plastid contains 135 genes, including 89 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The total G/C content of the C. australasica plastome is 38.4%. The complete plastome sequence of C. australasica will provide useful resources for conservation genetics research of this species and phylogenetic research of Rutaceae.
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- 2021
9. Complete plastome sequence of
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Zhi-Xin, Zhu, Wei-Xue, Mu, Jian-Hua, Wang, Jin-Ran, Zhang, Kun-Kun, Zhao, Cynthia, Ross Friedman, and Hua-Feng, Wang
- Subjects
illumina sequencing ,phylogenetic analysis ,Asparagales ,Dracaena cambodiana ,plastome ,Mitogenome Announcement ,Research Article ,Asparagaceae - Abstract
Dracaena cambodiana (Asparagaceae) is a treelike plant ranging from 3 to 10 m tall. It grows in low-elevation forests (0–300 m) having dry and sandy soils. It is distributed in Southern Hainan Island in China and other Southeast Asian countries (e.g. Cambodia, Laos, Thailand and Vietnam). The dried resin can be used medicinally as a substitute for that of Dracaena cochinchinensis. It has been ranked as a Vulnerable (VU) species in China. Here we report and characterize the complete plastid genome sequence of D. cambodiana. The complete plastome is 156,697 bp in length. It contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,526 bp, a Large Single-Copy (LSC) region of 84,988 bp and a Small Single-Copy (SSC) region of 18,657 bp. The plastome contains 113 genes, consisting of 76 unique protein-coding genes, 30 unique tRNA genes, four unique rRNA genes and three pseudogenes (i.e. matK, infA, ndhF). The overall A/T content in the plastome of D. cambodiana is 62.4%. We performed phylogenetic analyses using the entire plastome, including spacers, introns, etc., and we determined that D. cambodiana and Maianthemum bicolor were closely related. The complete plastome sequence of D. cambodiana will provide a useful resource for the conservation genetics of this species as well as for phylogenetic studies in Asparagales.
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- 2021
10. Complete plastome sequences of
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Wen-Wen, Liu, Xin-Hang, Tan, Kun-Kun, Zhao, Zhi-Xin, Zhu, and Hua-Feng, Wang
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Diospyros maclurei Merr ,Ebenaceae ,Diospyros hainanensis Merr ,plastome ,phylogeny ,Mitogenome Announcement ,genome structure ,Research Article - Abstract
Diospyros is the largest genus (about 485 species) in Ebenaceae. It is a deciduous or evergreen tree or shrub. It grows in pantropical and extending into temperate regions. Here, we report and characterize the complete plastid genome sequences of D. maclurei Merr. and D. hainanensis Merr. in an effort to provide genomic resources useful for promoting their systematics research and potential economic development. The complete plastome of D. maclurei is 157,946 bp in length, including two Inverted Repeat (IR) regions of 26,081 bp, a Large Single-Copy (LSC) region of 87,387 bp, and a Small Single-Copy (SSC) region of 18,397 bp. The plastome contains 114 genes, consisting of 80 unique protein-coding genes, 30 unique tRNA genes, and four unique rRNA genes. The overall A/T content in the plastome of D. maclurei is 62.60%. The complete plastome of D. hainanensis is 157,999 bp in length, including two Inverted Repeat (IR) regions of 26,077 bp, a Large Single-Copy (LSC) region of 87,523 bp, and a Small Single-Copy (SSC) region of 18,322 bp. The plastome contains 114 genes, consisting of 80 unique protein-coding genes, 30 unique tRNA genes, and four unique rRNA genes. The overall A/T content in the plastome of D. hainanensis is 62.60%. The complete plastome sequences of D. Maclurei and D. hainanensis will provide a useful resource for the conservation genetics of the two species as well as for the phylogenetic studies of Diospyros.
- Published
- 2021
11. Complete plastome sequence of
- Author
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Zhi-Xin, Zhu, Hong-Xin, Wang, and Hua-Feng, Wang
- Subjects
Sapindaceae ,Nephelium topengii ,plastome ,phylogeny ,Mitogenome Announcement ,genome structure ,Research Article - Abstract
Nephelium topengii is an evergreen tree of the Sapindaceae family, which can be used as timber. Here, we report and characterize the complete plastome of N. topengii. The complete plastome is 162,944 bp in length and contains the typical structure and gene content of angiosperm plastome, including two inverted repeat (IR) regions of 30,092 bp, a large single-copy (LSC) region of 85,909 bp and a small single-copy (SSC) region of 16,851bp. The plastome contains 130 genes, consisting of 80 unique protein-coding genes, 30 unique tRNA gene, 4 unique rRNA genes (5S rRNA, 4.5S rRNA, 23S rRNA and 16S rRNA). The overall A/T content in the plastome of N. topengii is 62.30%. The complete plastome sequence of N. topengii will provide a useful resource for the conservation genetics of this species as well as for phylogenetic studies in Sapindaceae.
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- 2021
12. Complete plastome sequence of
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Yu-Wen, Zou, Hong-Xin, Wang, Zhi-Xin, Zhu, and Hua-Feng, Wang
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Euphorbia milii ,Acanthaceae ,Euphorbiaceae ,magnoliaceae ,Pseuderanthemum haikangense ,plastome ,phylogeny ,Magnolia fordiana var. hainanensis ,Mitogenome Announcement ,genome structure ,Research Article - Abstract
Magnolia fordiana var. hainanensis (Dandy) Noot. (Magnoliaceae) is an endemic and ornamental tree distributed in Hainan, China. In this study, we report and characterize the complete plastid genome sequence of M. fordiana var. hainanensis in order to provide genomic resources helpful for promoting its conservation and garden utilization. The complete plastome is 160,157 bp in length and contains the typical quadripartite structure of angiosperm, including two Inverted Repeat (IRs) regions of 26,573 bp, a Large Single-Copy (LSC) region of 88,255 bp and a Small Single-Copy (SSC) region of 18,756 bp. The plastome contains 114 genes, consisting of 80 unique protein-coding genes, 30 unique tRNA gene and 4 unique rRNA genes. The overall A/T content in the plastome of M. fordiana var. hainanensis is 60.70%. The complete plastome sequence of M. fordiana var. hainanensis will provide a useful resource for the conservation and garden utilization of this species as well as for the phylogenetic studies of Magnoliaceae.
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- 2021
13. Complete plastome sequence of
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Xiu-Rong, Ke, Xiao-Feng, Zhang, Hong-Xin, Wang, Zhi-Xin, Zhu, Juan-Ling, Li, and Hua-Feng, Wang
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Euphorbiaceae ,plastome ,phylogeny ,Mallotus peltatus ,Mitogenome Announcement ,genome structure ,Research Article - Abstract
Mallotus peltatus is a tropical plant of the Euphorbiaceae family, which could be used as a beverage and medicine in Hainan, China. Here, we report and characterize the complete plastome of M. peltatus. The complete plastome is 163,304 bp in length and contains a typical structure and gene content of angiosperm plastome, including two inverted repeat (IR) regions of 27,112 bp, a large single-copy (LSC) region of 89,886 bp and a small single-copy (SSC) region of 18,840 bp. The plastome contains 131 genes, consisting of 78 unique protein-coding genes, 30 unique tRNA gene, four unique rRNA genes (5S rRNA, 4.5S rRNA, 23S rRNA and 16S rRNA), and eight pseudogenes. The overall A/T content in the plastome of M. peltatus is 64.02%. The complete plastome sequence of M. peltatus will provide a useful resource for the conservation genetics of this species as well as for phylogenetic studies in Euphorbiaceae.
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- 2020
14. Complete plastome sequence of Bridelia tomentosa Blume (Phyllanthaceae): a medicinal shrub species in South Asia
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Zhi-Xin Zhu, Hua-Feng Wang, Xiao-Feng Zhang, Yan Chen, and Xiu-Rong Ke
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Conservation genetics ,Euphorbia ,biology ,ved/biology ,Inverted repeat ,ved/biology.organism_classification_rank.species ,Phyllanthaceae ,Evergreen ,Plastome ,biology.organism_classification ,Shrub ,genome structure ,Deciduous ,Chloroplast DNA ,Botany ,Genetics ,Molecular Biology ,Mitogenome Announcement ,Bridelia tomentosa ,Research Article - Abstract
Bridelia tomentosa is a deciduous shrub in the family of Phyllanthaceae. It grows in the evergreen primary or secondary thickets or forests in the sea level from 1000 to 1500 m. It distributed in.south China (e.g., Fujian, Guangdong, Guangxi, Hainan etc) and other south Asian countries (e.g. Bangladesh, Bhutan, Cambodia etc). Here, we report and characterize the complete plastome of B. tomentosa. The complete plastome is of 149,958 bp in length with a typical structure and gene content of angiosperm plastome, including two inverted repeat (IRs) regions of 26,354 bp, a large single-copy (LSC) region of 81,355 bp and a small single-copy (SSC) region of 15,895 bp. The plastome contains 129 genes, consisting of 84 protein-coding genes, 37 tRNA genes, eight rRNA genes. The overall G/C content in the plastome of B. tomentosa is 36.0%. The complete plastome sequence of B. tomentosa will provide a useful resource for the conservation genetics of this species as well as for phylogenetic studies in Phyllanthaceae.
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- 2021
15. Complete plastome sequence of Vernicia Montana Lour. (Euphorbiaceae): a deciduous tree species in southeast Asia
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Hua-Feng Wang, Xiao-Feng Zhang, Zhi-Xin Zhu, and Jian-Feng Yao
- Subjects
0106 biological sciences ,0301 basic medicine ,Vernicia montana ,010603 evolutionary biology ,01 natural sciences ,Southeast asia ,03 medical and health sciences ,Genome structure ,Phylogenomics ,Botany ,Genetics ,Vernicia ,Molecular Biology ,Mitogenome Announcement ,Sequence (medicine) ,biology ,Euphorbiaceae ,Plastome ,biology.organism_classification ,030104 developmental biology ,Deciduous ,Chloroplast DNA ,Vernicia montana Lour ,Research Article - Abstract
Vernicia montana Lour. is a deciduous tree species belonging to the family of Euphorbiaceae, distributed in southeast Asia. Here, we report and characterize the complete plastome of Vernicia montana Lour. The complete plastome is of 164,506 bp in length with a typical structure and gene content of angiosperm plastome, including two inverted repeat (IRs) regions of 27,965 bp, a large single-copy (LSC) region of 91,427 bp and a small single-copy (SSC) region of 17,149 bp. The plastome contains 130 genes, consisting of 81 protein-coding genes (six of which are repetitive in IR), 38 tRNA genes (seven of which are repetitive in IR), seven rRNA genes (5S rRNA, 4.5S rRNA, 23S rRNA and 16S rRNA) (three of which are repetitive in the IR), and four pseudogenes. The overall G/C content in the plastome of Vernicia montana Lour. is 35.8%. The complete plastome sequence of montana Lour. will provide a useful resource for the conservation genetics of this species as well as for phylogenetic studies in Euphorbiaceae.
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- 2021
16. Complete plastome sequence of Elaeagnus glabra (Elaeagnaceae): an Asian endemic plant species
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Shui-Xing Luo, Guo-Zheng Shi, Jian-Hua Wang, Kun-Kun Zhao, Hua-Feng Wang, and Zhi-Xin Zhu
- Subjects
0106 biological sciences ,0301 basic medicine ,Vine ,ved/biology.organism_classification_rank.species ,phylogeny ,010603 evolutionary biology ,01 natural sciences ,Shrub ,genome structure ,Elaeagnus glabra ,03 medical and health sciences ,complete plastome ,Botany ,Genetics ,Rosales ,Molecular Biology ,Mitogenome Announcement ,biology ,ved/biology ,Evergreen ,biology.organism_classification ,030104 developmental biology ,Chloroplast DNA ,Plant species ,Elaeagnaceae ,Research Article - Abstract
Elaeagnus glabra is an evergreen vine or climbing shrub with 5 m height. It is widespread in southern China. It grows in the sunny forests or forest margins below 1000 m a.s.l. In this paper, we report and describe the complete plastome of E. glabra in order to provide useful genomic data for its systematic research. The complete plastome of E. glabra is 152,555 bp with a typical quadripartite structure of angiosperms. It contains two Inverted Repeats (IRs) of 25,918 bp, a large single-copy (LSC) of 82,408 bp, and a small single-copy (SSC) region of 18,311 bp. The complete plastome contains 129 genes, including 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The overall A/T content in the chloroplast genome of E. glabra is 62.90%. The phylogenetic analysis indicated that E. glabra is close to E. loureirii within Elaeagnaceae. The complete plastome of E. glabra will provide useful resources for the development and utilization of this species and the phylogenetic study of Rosales.
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- 2019
17. Complete plastome sequence of Jacaranda mimosifolia D. Don (Bignoniaceae): a beautiful landscaping tree species
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Shui-Xing Luo, Kun-Kun Zhao, Jian-Hua Wang, Hua-Feng Wang, Zhi-Xin Zhu, Ren-Li Chen, and Guo-Zheng Shi
- Subjects
0106 biological sciences ,0301 basic medicine ,Bignoniaceae ,Biology ,010603 evolutionary biology ,01 natural sciences ,Genome ,03 medical and health sciences ,Phylogenetics ,Botany ,Genetics ,Molecular Biology ,Illumina dye sequencing ,Mitogenome Announcement ,Whole genome sequencing ,Phylogenetic tree ,Jacaranda mimosifolia ,phylogenetic analysis ,Illumina sequencing ,biology.organism_classification ,030104 developmental biology ,Chloroplast DNA ,complete chloroplast ,Research Article - Abstract
Jacaranda mimosifolia is a deciduous arbor with blue flowers native to Brazil, Bolivia, and Argentina in South America. After introduction from South America, it was widely cultivated as a garden ornamental plant in South China. The complete chloroplast (cp) genome sequence of this ornamental species is reported in this study, based on high-throughput sequencing (Illumina). The complete cp genome is 153,514 bp in length, containing a pair of inverted repeat regions (IRs) of 25,408 bp, a large single-copy (LSC) region of 84,755 bp, and a small single-copy (SSC) region of 17,943 bp. The cp genome contains 130 genes, consisting of 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall A/T content in the cp genome of J. mimosifolia is 61.70%. The phylogenetic analyses indicate that there is a close relationship between J. mimosifolia and Tecomaria capensis. The complete cp sequence of J. mimosifolia will provide a useful resource for the development and utilization of this species as well as for the phylogenetic studies in Bignoniaceae.
- Published
- 2019
18. Complete plastome sequence of Magnolia omeiensis (W.C. Cheng) Dandy (Magnoliaceae)
- Author
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Xiao-Feng Zhang, Hua-Feng Wang, Hong-Xin Wang, Guo-Qing Wang, and Zhi-Xin Zhu
- Subjects
0106 biological sciences ,0301 basic medicine ,biology ,Evergreen ,biology.organism_classification ,Genome structure ,plastome ,phylogeny ,010603 evolutionary biology ,01 natural sciences ,Magnolia omeiensis ,Magnoliaceae ,genome structure ,03 medical and health sciences ,Critically endangered ,030104 developmental biology ,Chloroplast DNA ,Botany ,Genetics ,Molecular Biology ,Mitogenome Announcement ,Research Article - Abstract
Magnolia omeiensis is an evergreen tree with 25 meters heights. It is distributed in tropical 1200–1300 m. Mount Emei. And it has been ranked as a CR (Critically Endangered) species in China. Here, we report and characterize the complete plastome of M. omeiensis in an effort to provide genomic resources useful for promoting its systematics research. The plastome of M. omeiensis is found to possess a total length 160,021 bp with the typical quadripartite structure of angiosperms, contains two Inverted Repeats (IRs) of 26,336 bp, a Large Single-Copy (LSC) region of 88,061 bp and a Small Single-Copy (SSC) region of 19,288 bp. The plastome contains 114 genes, consisting of 80 unique protein-coding genes, 30 unique tRNA genes and 4 unique rRNA genes. The overall A/T content in the plastome of M. omeiensis is 60.70%. The phylogenetic analysis indicated that M. omeiensis is close to Magnolia yunnanensis within Magnoliaceae in this study. The complete plastome sequence of M. omeiensis will provide a useful resource for the conservation genetics of this species as well as for the phylogenetic studies of Magnoliaceae.
- Published
- 2019
19. Complete plastome sequence of Vatica mangachapoi (Dipterocarpaceae): a vulnerable (VU) plant species in Southeast Asia
- Author
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Kun-Kun Zhao, Zhi-Xin Zhu, Hua-Feng Wang, and Jian-Hua Wang
- Subjects
0106 biological sciences ,0301 basic medicine ,Conservation genetics ,Dipterocarpaceae ,phylogeny ,010603 evolutionary biology ,01 natural sciences ,genome structure ,03 medical and health sciences ,Malvales ,Phylogenetics ,Botany ,Genetics ,Molecular Biology ,Mitogenome Announcement ,biology ,Phylogenetic tree ,Vatica mangachapoi ,biology.organism_classification ,plastome ,030104 developmental biology ,Chloroplast DNA ,Vatica ,Research Article - Abstract
Vatica mangachapoi is a tree up to 20 m tall with white resinous. It is distributed in China (Hainan province), Indonesia, Malaysia (N Borneo), Philippines, Thailand, and Vietnam. It grows in forests on hills and mountain slopes below 700 metres. Its durable wood is used for making boats and building bridges and houses. It has been ranked as a VU (Vulnerable) species in China. Here we report and characterize the complete plastid genome sequence of V. mangachapoi in an effort to provide genomic resources useful for promoting its conservation and phylogenetic research. The complete plastome is 151,538 bp in length and contains the typical structure and gene content of angiosperm plastome, including two Inverted Repeat (IR) regions of 23,921 bp, a Large Single-Copy (LSC) region of 83,587 bp and a Small Single-Copy (SSC) region of 20,109 bp. The plastome contains 114 genes, consisting of 80 unique protein-coding genes, 30 unique tRNA gene, and 4 unique rRNA genes. The overall A/T content in the plastome of V. mangachapoi is 62.80%. The phylogenetic analysis indicated that V. mangachapoi and V. odorata is closely related and as an independent branch in Malvales in our study. The complete plastome sequence of V. mangachapoi will provide a useful resource for the conservation genetics of this species and for the phylogenetic studies for Vatica.
- Published
- 2018
20. Complete plastome sequence of Hydnocarpus hainanensis Merr (Achariaceae): an endemic ‘vulnerable’ tree in South China
- Author
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Jian-Hua Wang, Chao-Rui Chen, Zhi-Xin Zhu, Kun-Kun Zhao, and Hua-Feng Wang
- Subjects
0301 basic medicine ,Systematics ,Inverted repeat ,Asclepiadoideae ,Achariaceae ,Hydnocarpus hainanensis ,phylogeny ,genome structure ,03 medical and health sciences ,Phylogenetics ,Dilleniaceae ,Genetics ,Plastid ,Molecular Biology ,Mitogenome Announcement ,Hydnocarpus hainanensis Merr ,biology ,Hoya pottsii Traill ,fungi ,food and beverages ,Piperaceae ,Ribosomal RNA ,Piper laetispicum ,biology.organism_classification ,plastome ,Apocynaceae ,Hoya liangii Tsiang ,030104 developmental biology ,Chloroplast DNA ,Evolutionary biology ,Dillenia indica Linn ,Research Article - Abstract
Hydnocarpus hainanensis Merr. is an evergreen tree with a height of 6–12 m and a diameter at breast height of 50 cm. It is distributed in Guangxi, Guizhou, Hainan, South of Yunnan Province of China. Here, we report and characterize the complete plastid genome sequence of H. hainanensis in an effort to provide genomic resources useful for promoting its conservation and systematics research. The plastome of H. hainanensis is found to possess a total length 163,330 bp with the typical quadripartite structure of angiosperms, containing two inverted repeats (IRs) of 26,870 bp, a large single copy (LSC) region of 91,510 bp and a small single copy (SSC) region of 18,080 bp. The plastome contains 111 genes, consisting of 78 unique protein-coding genes (seven of which are duplicated in the IR: rps12, rps7, ndhB, ycf2, rpl23, rpl2, and rps19), 29 unique tRNA genes (seven of which are duplicated in the IR, i.e. trnNGUU, trnRACG, trnAUGC, trnlGAU, trnVGAC, trnLCAA, and trnlCAU) and four unique rRNA genes (5S rRNA, 4.55S rRNA, 23S rRNA, and 16S rRNA). The overall A/T content in the plastome of H. hainanensis is 63.70%. The phylogenetic analysis indicated that H. hainanensis is close to Salix rorida within Malpighiales. The complete plastome sequence of H. hainanensis will provide a useful resource for the conservation genetics of the one species as well as for the phylogenetic studies of Achariaceae.
- Published
- 2018
21. Complete plastome sequence of Nepenthes mirabilis (Nepenthaceae): a 'vulnerable' herb in China
- Author
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Jian-Hua Wang, Hua-Feng Wang, Chao-Rui Chen, Zhi-Xin Zhu, and Kun-Kun Zhao
- Subjects
0301 basic medicine ,food.ingredient ,caryophyllales ,Biology ,Southeast asia ,03 medical and health sciences ,0302 clinical medicine ,food ,Botany ,Genetics ,China ,Molecular Biology ,religion.religious_leadership_jurisdiction ,Illumina dye sequencing ,Mitogenome Announcement ,Sequence (medicine) ,Caroline Islands ,Caryophyllales ,phylogenetic analysis ,Nepenthes mirabilis ,biology.organism_classification ,plastome ,religion ,nepenthaceae ,030104 developmental biology ,Chloroplast DNA ,illumina sequencing ,Herb ,030217 neurology & neurosurgery ,Research Article - Abstract
Nepenthes mirabilis (Nepenthaceae) is an erect or climbing (0.5–2 m tall) herb distributed in Africa (Madagascar), south and southeast Asia, North Australia and Pacific Islands (Caroline Islands). There is only one species in China. It grows in wet and sandy soils places throughout forests, grasslands, swamps, mountains, roadsides, wastelands having altitudes that sea level to 400 m. It has been ranked as a VU (Vulnerable) species in China. Here we report and characterize the complete plastid genome sequence of N. mirabilis in an effort to provide genomic resources useful for its conservation. The complete plastome is 155,755 bp in length and contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,415 bp, a Large Single-Copy (LSC) region of 84,997 bp and a Small Single-Copy (SSC) region of 17,928 bp. The plastome contains 113 genes, consisting of 77 unique protein-coding genes, three pseudogenes, 29 unique tRNA genes, and four unique rRNA genes. The overall A/T content in the plastome of N. mirabilis is 62.8%. Phylogenetic analyses were performed using the entire plastome, including spacers, introns, etc., and we determined that N. mirabilis 32 and Dionaea muscipula were closely related. The complete plastome sequence of N. 33 mirabilis will provide a useful resource for the conservation genetics of this species as 34 well as for the phylogenetic studies in Caryophyllales.
- Published
- 2018
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