1. A chimeric ribozyme in clostridium difficile combines features of group I introns and insertion elements
- Author
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V, Braun, M, Mehlig, M, Moos, M, Rupnik, B, Kalt, D E, Mahony, and C, von Eichel-Streiber
- Subjects
Base Sequence ,Clostridioides difficile ,Reverse Transcriptase Polymerase Chain Reaction ,RNA Splicing ,Bacterial Toxins ,Molecular Sequence Data ,Genetic Variation ,Gene Expression Regulation, Bacterial ,Introns ,Enterotoxins ,RNA, Bacterial ,DNA Transposable Elements ,Nucleic Acid Conformation ,RNA, Catalytic ,Amino Acid Sequence - Abstract
CdlSt1, a DNA insertion of 1975 bp, was identified within tcdA-C34, the enterotoxin gene of the Clostridium difficile isolate C34. Located in the catalytic domain A1-C34, Cd/St1 combines features of two genetic elements. Within the first 434 nt structures characteristic for group I introns were found; encoding the two transposase-like proteins tlpA and tlpB nucleotides 435-1975 represent the remainder of a IS605-like insertion element. We show that the entire CdlSt1 is accurately spliced from tcdA-C34 primary transcripts and that purified TcdA-C34 toxin is of regular size and catalytic activity. A search for CdlSt1-related sequences demonstrates that the element is widespread in toxinogenic and non-toxinogenic C. difficile strains, indicating the mobility of CdlSt1. In strain C34, we characterize 10 CdlSt1 variants; all are highly homologous to CdlSt1 (93% identity), integrated in bacterial open reading frames (ORFs), show the typical composite structure of CdlSt1 and are precisely spliced from their primary transcripts. CdlSt1-like chimeric ribozymes appear to combine the invasiveness of an insertion element with the splicing ability of a group I intron, rendering transposition harmless for the interrupted gene.
- Published
- 2000