4 results on '"Liyanarachchi S"'
Search Results
2. GWAS of thyroid stimulating hormone highlights pleiotropic effects and inverse association with thyroid cancer.
- Author
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Zhou W, Brumpton B, Kabil O, Gudmundsson J, Thorleifsson G, Weinstock J, Zawistowski M, Nielsen JB, Chaker L, Medici M, Teumer A, Naitza S, Sanna S, Schultheiss UT, Cappola A, Karjalainen J, Kurki M, Oneka M, Taylor P, Fritsche LG, Graham SE, Wolford BN, Overton W, Rasheed H, Haug EB, Gabrielsen ME, Skogholt AH, Surakka I, Davey Smith G, Pandit A, Roychowdhury T, Hornsby WE, Jonasson JG, Senter L, Liyanarachchi S, Ringel MD, Xu L, Kiemeney LA, He H, Netea-Maier RT, Mayordomo JI, Plantinga TS, Hrafnkelsson J, Hjartarson H, Sturgis EM, Palotie A, Daly M, Citterio CE, Arvan P, Brummett CM, Boehnke M, de la Chapelle A, Stefansson K, Hveem K, Willer CJ, and Åsvold BO
- Subjects
- Genetic Loci, Genetic Predisposition to Disease, Goiter genetics, Humans, Mendelian Randomization Analysis, Multifactorial Inheritance genetics, Mutation, Missense genetics, Phenotype, Physical Chromosome Mapping, Prevalence, Risk Factors, Thyroglobulin genetics, Thyroid Neoplasms epidemiology, Genetic Pleiotropy, Genome-Wide Association Study, Thyroid Neoplasms genetics, Thyrotropin genetics
- Abstract
Thyroid stimulating hormone (TSH) is critical for normal development and metabolism. To better understand the genetic contribution to TSH levels, we conduct a GWAS meta-analysis at 22.4 million genetic markers in up to 119,715 individuals and identify 74 genome-wide significant loci for TSH, of which 28 are previously unreported. Functional experiments show that the thyroglobulin protein-altering variants P118L and G67S impact thyroglobulin secretion. Phenome-wide association analysis in the UK Biobank demonstrates the pleiotropic effects of TSH-associated variants and a polygenic score for higher TSH levels is associated with a reduced risk of thyroid cancer in the UK Biobank and three other independent studies. Two-sample Mendelian randomization using TSH index variants as instrumental variables suggests a protective effect of higher TSH levels (indicating lower thyroid function) on risk of thyroid cancer and goiter. Our findings highlight the pleiotropic effects of TSH-associated variants on thyroid function and growth of malignant and benign thyroid tumors.
- Published
- 2020
- Full Text
- View/download PDF
3. NF-κB inhibition rescues cardiac function by remodeling calcium genes in a Duchenne muscular dystrophy model.
- Author
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Peterson JM, Wang DJ, Shettigar V, Roof SR, Canan BD, Bakkar N, Shintaku J, Gu JM, Little SC, Ratnam NM, Londhe P, Lu L, Gaw CE, Petrosino JM, Liyanarachchi S, Wang H, Janssen PML, Davis JP, Ziolo MT, Sharma SM, and Guttridge DC
- Subjects
- Animals, CCCTC-Binding Factor metabolism, Calcium metabolism, Cells, Cultured, Chromatin Assembly and Disassembly genetics, Chromatin Assembly and Disassembly physiology, Histone Deacetylase 1 genetics, Histone Deacetylase 1 metabolism, Male, Mice, Mice, Inbred mdx, Muscular Dystrophy, Duchenne genetics, Repressor Proteins genetics, Repressor Proteins metabolism, Signal Transduction physiology, Sin3 Histone Deacetylase and Corepressor Complex, Sodium-Calcium Exchanger genetics, Sodium-Calcium Exchanger metabolism, Muscular Dystrophy, Duchenne metabolism, Myocytes, Cardiac metabolism, NF-kappa B metabolism
- Abstract
Duchenne muscular dystrophy (DMD) is a neuromuscular disorder causing progressive muscle degeneration. Although cardiomyopathy is a leading mortality cause in DMD patients, the mechanisms underlying heart failure are not well understood. Previously, we showed that NF-κB exacerbates DMD skeletal muscle pathology by promoting inflammation and impairing new muscle growth. Here, we show that NF-κB is activated in murine dystrophic (mdx) hearts, and that cardiomyocyte ablation of NF-κB rescues cardiac function. This physiological improvement is associated with a signature of upregulated calcium genes, coinciding with global enrichment of permissive H3K27 acetylation chromatin marks and depletion of the transcriptional repressors CCCTC-binding factor, SIN3 transcription regulator family member A, and histone deacetylase 1. In this respect, in DMD hearts, NF-κB acts differently from its established role as a transcriptional activator, instead promoting global changes in the chromatin landscape to regulate calcium genes and cardiac function.
- Published
- 2018
- Full Text
- View/download PDF
4. A genome-wide association study yields five novel thyroid cancer risk loci.
- Author
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Gudmundsson J, Thorleifsson G, Sigurdsson JK, Stefansdottir L, Jonasson JG, Gudjonsson SA, Gudbjartsson DF, Masson G, Johannsdottir H, Halldorsson GH, Stacey SN, Helgason H, Sulem P, Senter L, He H, Liyanarachchi S, Ringel MD, Aguillo E, Panadero A, Prats E, Garcia-Castaño A, De Juan A, Rivera F, Xu L, Kiemeney LA, Eyjolfsson GI, Sigurdardottir O, Olafsson I, Kristvinsson H, Netea-Maier RT, Jonsson T, Mayordomo JI, Plantinga TS, Hjartarson H, Hrafnkelsson J, Sturgis EM, Thorsteinsdottir U, Rafnar T, de la Chapelle A, and Stefansson K
- Subjects
- Adult, Asian People genetics, Case-Control Studies, Chromosomes, Human genetics, Female, Gene Expression Regulation, Neoplastic, Gene Frequency genetics, Genetic Predisposition to Disease, Genomic Structural Variation, Genotype, Humans, Male, Middle Aged, Pituitary Hormones analysis, Risk Factors, Thyroid Cancer, Papillary, Thyroid Gland metabolism, Thyroid Neoplasms metabolism, White People genetics, Whole Genome Sequencing, Carcinoma, Papillary genetics, Genetic Loci, Genome-Wide Association Study, Thyroid Neoplasms genetics
- Abstract
The great majority of thyroid cancers are of the non-medullary type. Here we report findings from a genome-wide association study of non-medullary thyroid cancer, including in total 3,001 patients and 287,550 controls from five study groups of European descent. Our results yield five novel loci (all with P
combined <3 × 10-8 ): 1q42.2 (rs12129938 in PCNXL2), 3q26.2 (rs6793295 a missense mutation in LRCC34 near TERC), 5q22.1 (rs73227498 between NREP and EPB41L4A), 10q24.33 (rs7902587 near OBFC1), and two independently associated variants at 15q22.33 (rs2289261 and rs56062135; both in SMAD3). We also confirm recently published association results from a Chinese study of a variant on 5p15.33 (rs2736100 near the TERT gene) and present a stronger association result for a moderately correlated variant (rs10069690; OR=1.20, P=3.2 × 10-7 ) based on our study of individuals of European ancestry. In combination, these results raise several opportunities for future studies of the pathogenesis of thyroid cancer.- Published
- 2017
- Full Text
- View/download PDF
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