1. Psoriasis genome-wide association study identifies susceptibility variants within LCE gene cluster at 1q21
- Author
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Sheng Xiu Liu, Hui Li, Xian Fa Tang, Haifeng Wang, Zai Xing Wang, Hou-Feng Zheng, Yi-Lin Cheng, Jian Wen Han, Xuejun Zhang, Xiao Yan Zhang, Qiao Yun Fang, Jianzhong Zhang, Zheng Zhang, Xiao Ming Liu, Hongyan Wang, Cheng Quan, Bao Qi Yang, Liangdan Sun, Fu Ren Zhang, Feng Li Xiao, Jian Qiang Yang, Lin Zhang, Song Ke Shen, Min Gao, Wen Sheng Lu, Fei Hao, Shu Mei Zhang, Chun Jun Yang, Hui Cheng, Yong Cui, Min Li, Xiong Ming Pu, Yu Zhen Li, Jie Zheng, Xinyi Lin, Fu Sheng Zhou, Qi Xing Zhu, Wei Dong Wu, Xin Zhang, Shun Lu, Jianjun Liu, Dan Ni Wang, Bi Hua Ji, Feng Yuan, Li Fan, Hong Jie Huang, Ting Ting Cao, Xianyong Yin, Jun He, Jun Lin Liu, Wei Ren, Chi Zhang, Wen Ming Zhou, Xing Fan, Kun Ju Zhu, Pei Guang Wang, Guo Shu Lin, An Ping Zhang, Da Lin, Chun Di He, Sen Yang, Xue Qin Yang, Wei Huang, Feng Yu Zhang, Li Min Xu, Bin Chen, and Wen Hui Du
- Subjects
Adult ,Male ,Linkage disequilibrium ,Adolescent ,Genome-wide association study ,Single-nucleotide polymorphism ,Biology ,Polymorphism, Single Nucleotide ,Linkage Disequilibrium ,Major Histocompatibility Complex ,Young Adult ,Polymorphism (computer science) ,Cornified Envelope Proline-Rich Proteins ,Genotype ,Gene cluster ,Genetics ,Humans ,Psoriasis ,Genetic Predisposition to Disease ,Child ,Gene ,Genetic association ,Interleukin-12 Subunit p40 ,Middle Aged ,Chromosomes, Human, Pair 1 ,Case-Control Studies ,Multigene Family ,Female ,Genome-Wide Association Study - Abstract
We report the first large genome-wide association study (GWAS) in a Chinese population to identify susceptibility variants for psoriasis using a two-stage case-control design. In the first stage, we carried out a genome-wide association analysis in 1,139 cases and 1,132 controls of Chinese Han ancestry using Illumina Human 610-Quad BeadChips. In the second stage, we took top SNPs forward for replication in two independent samples of 5,182 cases and 6,516 controls of Chinese Han ancestry, and 539 cases and 824 controls of Chinese Uygur ancestry. In addition to the strong replication for two known susceptibility loci MHC (rs1265181, P = 1.93 x 10(-208), OR = 22.62) and IL12B (rs3213094, P(combined) = 2.58 x 10(-26), OR = 0.78), we identified a new susceptibility locus within the LCE gene cluster on 1q21 (rs4085613, P(combined) = 6.69 x 10(-30), OR = 0.76).
- Published
- 2008