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Start Over Author "Krupovic, Mart" Journal nature reviews microbiology
13 results on '"Krupovic, Mart"'

4. The enigmatic archaeal virosphere

Author

Prangishvili, David, primary, Bamford, Dennis H., additional, Forterre, Patrick, additional, Iranzo, Jaime, additional, Koonin, Eugene V., additional, and Krupovic, Mart, additional

Published
2017
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5. Virus taxonomy in the age of metagenomics

Author

Simmonds, Peter, primary, Adams, Mike J., additional, Benkő, Mária, additional, Breitbart, Mya, additional, Brister, J. Rodney, additional, Carstens, Eric B., additional, Davison, Andrew J., additional, Delwart, Eric, additional, Gorbalenya, Alexander E., additional, Harrach, Balázs, additional, Hull, Roger, additional, King, Andrew M.Q., additional, Koonin, Eugene V., additional, Krupovic, Mart, additional, Kuhn, Jens H., additional, Lefkowitz, Elliot J., additional, Nibert, Max L., additional, Orton, Richard, additional, Roossinck, Marilyn J., additional, Sabanadzovic, Sead, additional, Sullivan, Matthew B., additional, Suttle, Curtis A., additional, Tesh, Robert B., additional, van der Vlugt, René A., additional, Varsani, Arvind, additional, and Zerbini, F. Murilo, additional

Published
2017
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8. Consensus statement: Virus taxonomy in the age of metagenomics

Author

Simmonds, Peter, Adams, Mike J., Benkő, Mária, Breitbart, Mya, Brister, J. Rodney, Carstens, Eric B., Davison, Andrew J., Delwart, Eric, Gorbalenya, Alexander E., Harrach, Balázs, Hull, Roger, King, Andrew M.Q., Koonin, Eugene V., Krupovic, Mart, Kuhn, Jens H., Lefkowitz, Elliot J., Nibert, Max L., Orton, Richard, Roossinck, Marilyn J., Sabanadzovic, Sead, Sullivan, Matthew B., Suttle, Curtis A., Tesh, Robert B., van der Vlugt, René A., Varsani, Arvind, and Zerbini, F. Murilo

Abstract

The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control, viruses that are known only from metagenomic data can, and should be, incorporated into the official classification scheme of the International Committee on Taxonomy of Viruses (ICTV). Although a taxonomy that is based on metagenomic sequence data alone represents a substantial departure from the traditional reliance on phenotypic properties, the development of a robust framework for sequence-based virus taxonomy is indispensable for the comprehensive characterization of the global virome. In this Consensus Statement article, we consider the rationale for why metagenomic sequence data should, and how it can, be incorporated into the ICTV taxonomy, and present proposals that have been endorsed by the Executive Committee of the ICTV.

Published
2017
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13. Virus evolution: how far does the double beta-barrel viral lineage extend?

Author

Krupovic M and Bamford DH

Subjects
Adenosine Triphosphatases chemistry, Animals, Archaeal Viruses classification, Archaeal Viruses genetics, Archaeal Viruses metabolism, Bacteriophages classification, Bacteriophages genetics, Bacteriophages metabolism, Capsid Proteins chemistry, Eukaryotic Cells, Host-Pathogen Interactions, Humans, Models, Biological, Models, Molecular, Protein Conformation, Virus Assembly, Viruses metabolism, Biological Evolution, Viruses classification, Viruses genetics
Abstract

During the past few years one of the most astonishing findings in the field of virology has been the realization that viruses that infect hosts from all three domains of life are often structurally similar. The recent burst of structural information points to a need to create a new way to organize the virosphere that, in addition to the current classification, would reflect relationships between virus families. Using the vertical beta-barrel major capsid proteins and ATPases related to known viral genome-packaging ATPases as examples, we can now re-evaluate the classification of viruses and virus-like genetic elements from a structural standpoint.

Published
2008
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