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A common problem in neural recordings is the low signal-to-noise ratio (SNR), particularly when using non-invasive techniques like magneto- or electroencephalography (M/EEG). To address this problem, experimental designs often include repeated trials, which are then averaged to improve the SNR or to infer statistics that can be used in the design of a denoising spatial filter. However, collecting enough repeated trials is often impractical and even impossible in some paradigms, while analyses on existing data sets may be hampered when these do not contain such repeated trials. Therefore, we present a data-driven method that takes advantage of the knowledge of the presented stimulus, to achieve a joint noise reduction and dimensionality reduction without the need for repeated trials. The method first estimates the stimulus-driven neural response using the given stimulus, which is then used to find a set of spatial filters that maximize the SNR based on a generalized eigenvalue decomposition. As the method is fully data-driven, the dimensionality reduction enables researchers to perform their analyses without having to rely on their knowledge of brain regions of interest, which increases accuracy and reduces the human factor in the results. In the context of neural tracking of a speech stimulus using EEG, our method resulted in more accurate short-term temporal response function (TRF) estimates, higher correlations between predicted and actual neural responses, and higher attention decoding accuracies compared to existing TRF-based decoding methods. We also provide an extensive discussion on the central role played by the generalized eigenvalue decomposition in various denoising methods in the literature, and address the conceptual similarities and differences with our proposed method.

Introduction: Neuronal oscillations synchronize processing in the brain over large spatiotemporal scales and thereby facilitate integration of individual functional modules. Up to now, the relation between the phases of neuronal oscillations and behavior or perception has mainly been analyzed in sensor space of multivariate EEG/MEG recordings. However, sensor-space analysis distorts the topographies of the underlying neuronal sources and suffers from low signal-to-noise ratio. Instead, we propose an optimized source reconstruction approach (Phase Coupling Optimization, PCO). Methods: PCO maximizes the 'mean vector length', calculated from the phases of recovered neuronal sources and a target variable of interest (e.g., experimental performance). As pre-processing, the signal-to-noise ratio in the search-space is maximized by spatio-spectral decomposition. PCO was benchmarked against several competing algorithms and sensor-space analysis using realistic forward model simulations. As a practical example, thirteen 96-channel EEG measurements during a simple reaction time task were analyzed. After time-frequency decomposition, PCO was applied to the EEG to examine the relation between the phases of pre-stimulus EEG activity and reaction times. Results: In simulations, PCO outperformed other spatial optimization approaches and sensor-space analysis. Scalp topographies of the underlying source patterns and the relation between the phases of the source activity and the target variable could be reconstructed accurately even for very low SNRs (−10 dB). In a simple reaction time experiment, the phases of pre-stimulus delta waves (

Local spatially-adaptive canonical correlation analysis (local CCA) with spatial constraints has been introduced to fMRI multivariate analysis for improved modeling of activation patterns. However, current algorithms require complicated spatial constraints that have only been applied to 2D local neighborhoods because the computational time would be exponentially increased if the same method is applied to 3D spatial neighborhoods. In this study, an efficient and accurate line search sequential quadratic programming (SQP) algorithm has been developed to efficiently solve the 3D local CCA problem with spatial constraints. In addition, a spatially-adaptive kernel CCA (KCCA) method is proposed to increase accuracy of fMRI activation maps. With oriented 3D spatial filters anisotropic shapes can be estimated during the KCCA analysis of fMRI time courses. These filters are orientation-adaptive leading to rotational invariance to better match arbitrary oriented fMRI activation patterns, resulting in improved sensitivity of activation detection while significantly reducing spatial blurring artifacts. The kernel method in its basic form does not require any spatial constraints and analyzes the whole-brain fMRI time series to construct an activation map. Finally, we have developed a penalized kernel CCA model that involves spatial low-pass filter constraints to increase the specificity of the method. The kernel CCA methods are compared with the standard univariate method and with two different local CCA methods that were solved by the SQP algorithm. Results show that SQP is the most efficient algorithm to solve the local constrained CCA problem, and the proposed kernel CCA methods outperformed univariate and local CCA methods in detecting activations for both simulated and real fMRI episodic memory data. [ABSTRACT FROM AUTHOR]

Introduction Neuronal oscillations synchronize processing in the brain over large spatiotemporal scales and thereby facilitate integration of individual functional modules. Up to now, the relation between the phases of neuronal oscillations and behavior or perception has mainly been analyzed in sensor space of multivariate EEG/MEG recordings. However, sensor-space analysis distorts the topographies of the underlying neuronal sources and suffers from low signal-to-noise ratio. Instead, we propose an optimized source reconstruction approach (Phase Coupling Optimization, PCO). Methods PCO maximizes the 'mean vector length', calculated from the phases of recovered neuronal sources and a target variable of interest (e.g., experimental performance). As pre-processing, the signal-to-noise ratio in the search-space is maximized by spatio-spectral decomposition. PCO was benchmarked against several competing algorithms and sensor-space analysis using realistic forward model simulations. As a practical example, thirteen 96-channel EEG measurements during a simple reaction time task were analyzed. After time-frequency decomposition, PCO was applied to the EEG to examine the relation between the phases of pre-stimulus EEG activity and reaction times. Results In simulations, PCO outperformed other spatial optimization approaches and sensor-space analysis. Scalp topographies of the underlying source patterns and the relation between the phases of the source activity and the target variable could be reconstructed accurately even for very low SNRs (−10 dB). In a simple reaction time experiment, the phases of pre-stimulus delta waves (<0.1 Hz) with widely distributed fronto-parietal source topographies were found predictive of the reaction times. Discussion and conclusions From multivariate recordings, PCO can reconstruct neuronal sources that are phase-coupled to a target variable using a data-driven optimization approach. Its superiority has been shown in simulations and in the analysis of a simple reaction time experiment. From this data, we hypothesize that the phase entrainment of slow delta waves (<1 Hz) facilitates sensorimotor integration in the brain and that this mechanism underlies the faster processing of anticipated stimuli. We further propose that the examined slow delta waves, observed to be phase-coupled to reaction times, correspond to the compound potentials typically observed in paradigms of stimulus anticipation and motor preparation. [ABSTRACT FROM AUTHOR]

Due to their high signal-to-noise ratio (SNR) and robustness to artifacts, steady state visual evoked potentials (SSVEPs) are a popular technique for studying neural processing in the human visual system. SSVEPs are conventionally analyzed at individual electrodes or linear combinations of electrodes which maximize some variant of the SNR. Here we exploit the fundamental assumption of evoked responses – reproducibility across trials – to develop a technique that extracts a small number of high SNR, maximally reliable SSVEP components. This novel spatial filtering method operates on an array of Fourier coefficients and projects the data into a low-dimensional space in which the trial-to-trial spectral covariance is maximized. When applied to two sample data sets, the resulting technique recovers physiologically plausible components (i.e., the recovered topographies match the lead fields of the underlying sources) while drastically reducing the dimensionality of the data (i.e., more than 90% of the trial-to-trial reliability is captured in the first four components). Moreover, the proposed technique achieves a higher SNR than that of the single-best electrode or the Principal Components. We provide a freely-available MATLAB implementation of the proposed technique, herein termed “Reliable Components Analysis”. [ABSTRACT FROM AUTHOR]

Naturalistic stimuli, such as normal speech and narratives, are opening up intriguing prospects in neuroscience, especially when merging neuroimaging with machine learning methodology. Here we propose a task-optimized spatial filtering strategy for uncovering individual magnetoencephalographic (MEG) responses to audiobook stories. Ten subjects listened to 1-h-long recording once, as well as to 48 repetitions of a 1-min-long speech passage. Employing response replicability as statistical validity and utilizing unsupervised learning methods, we trained spatial filters that were able to generalize over datasets of an individual. For this blind-signal-separation (BSS) task, we derived a version of multi-set similarity-constrained canonical correlation analysis (SimCCA) that theoretically provides maximal signal-to-noise ratio (SNR) in this setting. Irrespective of significant noise in unaveraged MEG traces, the method successfully uncovered feasible time courses up to ~ 120 Hz, with the most prominent signals below 20 Hz. Individual trial-to-trial correlations of such time courses reached the level of 0.55 (median 0.33 in the group) at ~ 0.5 Hz, with considerable variation between subjects. By this filtering, the SNR increased up to 20 times. In comparison, independent component analysis (ICA) or principal component analysis (PCA) did not improve SNR notably. The validity of the extracted brain signals was further assessed by inspecting their associations with the stimulus, as well as by mapping the contributing cortical signal sources. The results indicate that the proposed methodology effectively reduces noise in MEG recordings to that extent that brain responses can be seen to nonrecurring audiobook stories. The study paves the way for applications aiming at accurately modeling the stimulus–response-relationship by tackling the response variability, as well as for real-time monitoring of brain signals of individuals in naturalistic experimental conditions. [ABSTRACT FROM AUTHOR]

Abstract: According to recent functional magnetic resonance imaging (fMRI) studies, spectators of a movie may share similar spatiotemporal patterns of brain activity. We aimed to extend these findings of intersubject correlation to temporally accurate single-trial magnetoencephalography (MEG). A silent 15-min black-and-white movie was shown to eight subjects twice. We adopted a spatial filtering model and estimated its parameter values by using multi-set canonical correlation analysis (M-CCA) so that the intersubject correlation was maximized. The procedure resulted in multiple (mutually uncorrelated) time-courses with statistically significant intersubject correlations at frequencies below 10Hz; the maximum correlation was 0.28±0.075 in the ≤1Hz band. Moreover, the 24-Hz frame rate elicited steady-state responses with statistically significant intersubject correlations up to 0.29±0.12. To assess the brain origin of the across-subjects correlated signals, the time-courses were correlated with minimum-norm source current estimates (MNEs) projected to the cortex. The time series implied across-subjects synchronous activity in the early visual, posterior and inferior parietal, lateral temporo-occipital, and motor cortices, and in the superior temporal sulcus (STS) bilaterally. These findings demonstrate the capability of the proposed methodology to uncover cortical MEG signatures from single-trial signals that are consistent across spectators of a movie. [Copyright &y& Elsevier]

• EEG frequency-tagging indexes two recognition brain functions automatically elicited by seeing a face. • Images parametrically increase in either duration or spatial frequency content. • Observers consistently distinguish faces vs. nonfaces based on very little sensory input. • Accessing the same faces' familiarity status demands greater informational content. • Information thresholds for familiar face recognition vary widely across individuals. Seeing a face in the real world provokes a host of automatic categorisations related to sex, emotion, identity, and more. Such individual facets of human face recognition have been extensively examined using overt categorisation judgements, yet their relative informational dependencies during the same face encounter are comparatively unknown. Here we used EEG to assess how increasing access to sensory input governs two ecologically relevant brain functions elicited by seeing a face: Distinguishing faces and nonfaces, and recognising people we know. Observers viewed a large set of natural images that progressively increased in either image duration (experiment 1) or spatial frequency content (experiment 2). We show that in the absence of an explicit categorisation task, the human brain requires less sensory input to categorise a stimulus as a face than it does to recognise whether that face is familiar. Moreover, where sensory thresholds for distinguishing faces/nonfaces were remarkably consistent across observers, there was high inter-individual variability in the lower informational bound for familiar face recognition, underscoring the neurofunctional distinction between these categorisation functions. By i) indexing a form of face recognition that goes beyond simple low-level differences between categories, and ii) tapping multiple recognition functions elicited by the same face encounters, the information minima we report bear high relevance to real-world face encounters, where the same stimulus is categorised along multiple dimensions at once. Thus, our finding of lower informational requirements for generic vs. familiar face recognition constitutes some of the strongest evidence to date for the intuitive notion that sensory input demands should be lower for recognising face category than face identity. [ABSTRACT FROM AUTHOR]

Abstract: Some patients with epilepsy have difficulty performing complex language tasks due to the long duration of the disease and cognitive side effects of antiepileptic drugs. Therefore, a simple passive paradigm would be useful for determining the language dominance lateralization in epilepsy patients. The goal of this study was to develop an efficient and non-invasive analysis method for determining language dominance in epilepsy patients. To this end, magnetoencephalography was performed while an auditory stimulus sequence comprised of two one-syllable spoken words was presented to 17 subjects in an oddball paradigm without subject response. The time-frequency difference between deviant and standard sounds was then analyzed in the source space using a spatial filtering method that was based on minimum-norm estimation. The laterality index was estimated in language-related regions of interest (ROI). The results were compared to the traditional lateralization method using the Wada test. Beta band oscillation activity decreased during deviant stimulation, and the lateralization of the decrease was in good agreement with the Wada test, in the posterior part of the inferior frontal gyrus in 94% of the subjects and in the posterior part of the superior temporal gyrus in 71% of the subjects. In conclusion, the ROI-based time-frequency difference between deviant and standard sounds can be used to assess language lateralization in accordance with the Wada test. [Copyright &y& Elsevier]

A common problem in neural recordings is the low signal-to-noise ratio (SNR), particularly when using non-invasive techniques like magneto- or electroencephalography (M/EEG). To address this problem, experimental designs often include repeated trials, which are then averaged to improve the SNR or to infer statistics that can be used in the design of a denoising spatial filter. However, collecting enough repeated trials is often impractical and even impossible in some paradigms, while analyses on existing data sets may be hampered when these do not contain such repeated trials. Therefore, we present a data-driven method that takes advantage of the knowledge of the presented stimulus, to achieve a joint noise reduction and dimensionality reduction without the need for repeated trials. The method first estimates the stimulus-driven neural response using the given stimulus, which is then used to find a set of spatial filters that maximize the SNR based on a generalized eigenvalue decomposition. As the method is fully data-driven, the dimensionality reduction enables researchers to perform their analyses without having to rely on their knowledge of brain regions of interest, which increases accuracy and reduces the human factor in the results. In the context of neural tracking of a speech stimulus using EEG, our method resulted in more accurate short-term temporal response function (TRF) estimates, higher correlations between predicted and actual neural responses, and higher attention decoding accuracies compared to existing TRF-based decoding methods. We also provide an extensive discussion on the central role played by the generalized eigenvalue decomposition in various denoising methods in the literature, and address the conceptual similarities and differences with our proposed method. [ABSTRACT FROM AUTHOR]