1. T and NK cell abundance defines two distinct subgroups of renal cell carcinoma
- Author
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Lee, Moon Hee, Järvinen, Petrus, Nisen, Harry, Brück, Oscar, Ilander, Mette, Uski, Ilona, Theodoropoulos, Jason, Kankainen, Matti, Mirtti, Tuomas, Mustjoki, Satu, Kreutzman, Anna, TRIMM - Translational Immunology Research Program, HUS Comprehensive Cancer Center, Department of Oncology, HUS Abdominal Center, Clinicum, Department of Surgery, Urologian yksikkö, Department of Clinical Chemistry and Hematology, Institute for Molecular Medicine Finland, Integrins in immunity, Hematologian yksikkö, HUSLAB, Digital Precision Cancer Medicine (iCAN), Research Program in Systems Oncology, and Department of Pathology
- Subjects
KIDNEY CANCER ,IMPACT ,GENETIC-BASIS ,3122 Cancers ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,HLA-DR Antigens ,ATLAS ,solid tumors ,RC581-607 ,3126 Surgery, anesthesiology, intensive care, radiology ,rcc ,Nephrectomy ,t cell ,Kidney Neoplasms ,IMMUNE CONTEXTURE ,Killer Cells, Natural ,Humans ,tumor immunology ,nk cell ,Immunologic diseases. Allergy ,Carcinoma, Renal Cell ,RC254-282 ,Research Article - Abstract
Renal cell carcinoma (RCC) is considered as an immunogenic cancer. Because not all patients respond to current immunotherapies, we aimed to investigate the immunological heterogeneity of RCC tumors. We analyzedthe immunophenotype of the circulating, tumor, and matching adjacent healthy kidney immune cells from 52 nephrectomy patients with multi-parameter flow cytometry. Additionally, we studied the transcriptomic and mutation profiles of 20 clear cell RCC (ccRCC) tumors with bulk RNA sequencing and a customized pan-cancer gene panel. The tumor samples clustered into two distinct subgroups defined by the abundance of intratumoral CD3+ T cells (CD3(high), 25/52) and NK cells (NKhigh, 27/52). CD3(high) tumors had an overall higher frequency of tumor infiltrating lymphocytes and PD-1 expression on the CD8+ T cells compared to NKhigh tumors. The tumor infiltrating T and NK cells had significantly elevated expression levels of LAG-3, PD-1, and HLA-DR compared to the circulating immune cells. Transcriptomic analysis revealed increased immune signaling (IFN-gamma, TNF-alpha via NF-kappa B, and T cell receptor signaling) and kidney metabolism pathways in the CD3(high) subgroup. Genomic analysis confirmed the typical ccRCC mutation profile including VHL, PBRM1, and SETD2 mutations, and revealed PBRM1 as a uniquely mutated gene in the CD3(high) subgroup. Approximately half of the RCC tumors have a high infiltration of NK cells associated with a lower number of tumor infiltrating lymphocytes, lower PD-1 expression, a distinct transcriptomic and mutation profile, providing insights to the immunological heterogeneity of RCC which may impact treatment responses to immunological therapies.
- Published
- 2022