1. Association of the characteristics of B- and T-cell repertoires with papillary thyroid carcinoma
- Author
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Lumei Qiu, Yong Dai, Weibing Pan, Chang Zou, Jun Zeng, Liu Song, Ni Xie, Jingjun Qiu, Peng Zhu, Zhiqiang Cheng, and Guoping Sun
- Subjects
0301 basic medicine ,Cancer Research ,endocrine system diseases ,B-cell receptors ,B-cell receptor ,Clone (cell biology) ,chemical and pharmacologic phenomena ,Biology ,Thyroid carcinoma ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Thyroid cancer ,Gene ,T-cell receptor ,breakpoint cluster region ,high-throughput sequencing ,Articles ,medicine.disease ,Molecular biology ,030104 developmental biology ,T-cell receptors ,Oncology ,complementarity-determining region 3 ,030220 oncology & carcinogenesis ,papillary thyroid carcinoma ,Immunoglobulin heavy chain - Abstract
Papillary thyroid carcinoma (PTC) is the most common type of thyroid cancer. Complementarity-determining region 3 (CDR3) of B-cell receptors (BCRs) and T-cell receptors are the major site of antigen recognition, which determines a unique clone type, and are considered to be the representative of the disease. In the present study, high-throughput sequencing was used to analyze the association of characteristics of the BCR immunoglobulin heavy chain (IGH) and the T-cell receptor β chain (TRB) CDR3 genes in PTC and corresponding pericarcinous tissues from patients. A difference of CDR3 length distributions of total IGH CDR3 sequences between the two groups was revealed. IGHV3-11/IGHJ6, TRBV2/TRBJ1-2 and TRBV2/TRBJ1-1 may be biomarkers for the development of PTC. Furthermore, it was revealed that the extent of the common clonotype expressions at the amino acid level was slightly higher compared with the nucleotide level. The Shannon entropy demonstrated a diversity reduction in PTC compared with the pericarcinous group, and the highly expended clone (HEC) expression of PTC was higher compared with that of the corresponding pericarcinous group. Additionally, the highest clone frequency percentage of IGH and TRB was at 0.1-1.0% degree of expansion, as HEC expression was higher in PTC compared with the matched group. There was no shared clone of HECs in the two groups either at the amino acid level or at the nucleotide expression level. The differential expression of CDR3 sequences of PTC have been identified in the present study. Further research is required for assessing the immune repertoire size, diversity, cloning tracking and finding public clones of T-cell and B-cell populations in the development of PTC.
- Published
- 2018