Search

The p16 tumor suppressor is coded by CDKN2A (9p21) and plays an important role during carcinogenesis and tumor progression in numerous tumor entities. The aim of our study was to evaluate the prognostic role of p16 expression and CDKN2A deletion in esophageal cancer (EC). Therefore, we analyzed p16 and KI67 expression by immunohistochemistry and 9p21 deletion by fluorescence in-situ hybridization on a tissue microarray including 398 adenocarcinomas (AC) and 293 squamous cell carcinomas (SCC) with clinical follow up-data. p16 positivity was found in 30.2% of AC and 13.9% of SCC and CDKN2A deletion in 32.1% of AC and 33.5% of SCC. In SCC p16 immunostaining correlated with low tumor stage (P = 0.014). In AC Ki67 positivity was associated with high tumor stage (P = 0.001), presence of lymph node metastasis (P = 0.009), high UICC stage (P = 0.001) and poor grading (P = 0.005). Overall survival (OS) was shorter for patients with high Ki67 labeling index (Ki67LI; P = 0.009) and negative p16 immunostaining (P = 0.026). In both histological tumor types, CDKN2A deletion showed no association with phenotype or outcome. Proportional cox-regression modeling revealed patients’ age, tumor stage, lymph node metastasis and Ki67 labeling index as independent prognostic markers in AC. In SCC, only patients’ age and tumor stage proved to be independent prognosticators. In summary, our study shows that loss of p16 expression and high Ki67LI is linked to shortened OS in AC. CDKN2A deletion shows no relevant association with tumor phenotype and patient outcome.

Loss of the putative tumor suppressor BAP1 is a candidate biomarker for adverse prognosis in many cancer types, but conversely for improved survival in others. Studies on the expression and prognostic role of BAP1 in prostate cancer are currently lacking. We used a tissue microarray of 17,747 individual prostate cancer samples linked with comprehensive pathological, clinical and molecular data and studied the immunohistochemical expression of BAP1. BAP1 expression was typically up regulated in cancers as compared to adjacent normal prostatic glands. In 15,857 cancers, BAP1 staining was weak in 3.3%, moderate in 41.6% and strong in 17.4%. Strong BAP1 staining was associated with advanced tumor stage (p

// Till Eichenauer 1, 2, * , Mohammad Hussein 1, * , Claudia Hube-Magg 1 , Martina Kluth 1 , Franziska Buscheck 1 , Doris Hoflmayer 1 , Maria Christina Tsourlakis 1 , Stefan Steurer 1 , Till S. Clauditz 1 , Andreas M. Luebke 1 , Eike Burandt 1 , Waldemar Wilczak 1 , Andrea Hinsch 1 , David Dum 1 , Burkhard Beyer 3 , Thomas Steuber 3 , Hartwig Huland 3 , Markus Graefen 3 , Ronald Simon 1 , Guido Sauter 1 , Nathaniel Melling 4 , Thorsten Schlomm 5 and Sarah Minner 1 1 Institute of Pathology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany 2 Department of Urology, University Medical Center, Hamburg-Eppendorf, Hamburg, Germany 3 Martini-Clinic, Prostate Cancer Center, University Medical Center Hamburg-Eppendorf, Hamburg, Germany 4 Department of General, Visceral and Thoracic Surgery, University Medical Center Hamburg-Eppendorf, Hamburg, Germany 5 Department of Urology, Charite-Universitatsmedizin Berlin, Berlin, Germany * These authors contributed equally to this work Correspondence to: Ronald Simon, email: R.Simon@uke.de Keywords: GSK3beta; prostate cancer; prognosis; immunohistochemistry Received: January 16, 2019 Accepted: February 15, 2019 Published: March 01, 2019 ABSTRACT Glycogen synthase kinase 3s (GSK3s) regulates many cancer relevant cellular processes and represents a potential therapeutic target. GSK3s overexpression has been linked to adverse tumor features in many cancers, but its role in prostate cancer remains uncertain. We employed immunohistochemical GSK3s expression analysis on a tissue microarray with 12,427 prostate cancers. Cytoplasmic and nuclear GSK3s staining was separately analyzed. GSK3s staining was absent in normal prostate epithelium, whereas 57% of 9,164 interpretable cancers showed detectable GSK3s expression. Cytoplasmic staining was considered weak, moderate, and strong in 36%, 19.5% and 1.5% of tumors and was accompanied by nuclear GSK3s staining in 47% of cases. Cytoplasmic GSK3s staining as well as nuclear GSK3s accumulation was associated with advanced tumor stage, high Gleason grade, presence of lymph node metastasis and early biochemical recurrence ( p < 0.0001 each for cytoplasmic staining and nu-clear accumulation). Prognosis of GSK3s positive cancers became particularly poor if nuclear GSK3s staining was also seen ( p < 0.0001). The prognostic impact of nuclear GSK3s accumu-lation was independent of established preoperative and postoperative parameters in multivari-ate analyses ( p < 0.0001). The significant association of GSK3s expression with deletions of PTEN , 3p13 ( p < 0.0001 each), 5q21 ( p = 0.0014) and 6q15 ( p = 0.0026) suggest a role of GSK3s in the development of genomic instability. In summary, the results of our study identify GSK3s as an independent prognostic marker in prostate cancer.

// Christoph Burdelski 2, * , Laura Borcherding 1, * , Martina Kluth 1 , Claudia Hube-Magg 1 , Nathaniel Melling 1, 2 , Ronald Simon 1 , Christina Moller-Koop 1 , Philipp Weigand 1 , Sarah Minner 1 , Alexander Haese 3 , Hans Uwe Michl 3 , Maria Christina Tsourlakis 1 , Frank Jacobsen 1 , Andrea Hinsch 1 , Corinna Wittmer 1 , Patrick Lebok 1 , Stefan Steurer 1 , Jakob R. Izbicki 2 , Guido Sauter 1 , Till Krech 1 , Franziska Buscheck 1 , Till Clauditz 1 , Thorsten Schlomm 3, 4 , Waldemar Wilczak 1 1 Institute of Pathology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany 2 General, Visceral and Thoracic Surgery Department and Clinic, University Medical Center Hamburg-Eppendorf, Hamburg, Germany 3 Martini-Clinic, Prostate Cancer Center, University Medical Center Hamburg- Eppendorf, Hamburg, Germany 4 Department of Urology, Section for Translational Prostate Cancer Research, University Medical Center Hamburg-Eppendorf, Hamburg, Germany * These authors contributed equally to this work Correspondence to: Ronald Simon, email: R.Simon@uke.de Keywords: prostate cancer, prognosis, immunohistochemistry, FAM13C Received: June 30, 2016 Accepted: March 08, 2017 Published: March 18, 2017 ABSTRACT FAM13C, a gene with unknown function is included in several mRNA signatures for prostate cancer aggressiveness. To understand the impact of FAM13C on prognosis and its relationship to molecularly defined subsets, we analyzed FAM13C expression by immunohistochemistry on a tissue microarray containing 12,400 prostate cancer specimens. Results were compared to phenotype, ERG status, genomic deletions of 3p, 5q, 6q and PTEN , and biochemical recurrence. FAM13C was detectable in cell nuclei of cancerous and non-neoplastic prostate cells. 67.5% of 9,633 interpretable cancers showed FAM13C expression: strong in 28.3%, moderate in 24.6% and weak in 14.6%. Strong FAM13C expression was linked to advanced pT stage, high Gleason grade, positive lymph node status, and early biochemical recurrence ( p < 0.0001 each). FAM13C expression was associated with TMPRSS2:ERG fusions. It was present in 85% of ERG positive but in only 54% of ERG negative cancers ( p < 0.0001), and in 91.1% of PTEN deleted but in only 69.2% of PTEN non-deleted cancers ( p < 0.0001). The prognostic role of FAM13C expression was independent of classical and quantitative Gleason grade, pT stage, pN stage, surgical margin status and preoperative PSA. In conclusion, the results of our study demonstrate that expression of FAM13C is an independent prognostic marker in prostate cancer. Finding FAM13C also in non-neoplastic prostate tissues highlights the importance of properly selecting cancer-rich areas for RNA-based FAM13C expression analysis.

// Franziska Buscheck 1 , Christoph Fraune 1 , Ronald Simon 1 , Martina Kluth 1 , Claudia Hube-Magg 1 , Christina Moller-Koop 1 , Imren Sarper 1 , Kathrin Ketterer 1 , Tjark Henke 1 , Christian Eichelberg 3 , Roland Dahlem 2 , Waldemar Wilczak 1 , Guido Sauter 1 , Margit Fisch 2 , Till Eichenauer 2 and Michael Rink 2 1 Institute of Pathology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany 2 Department of Urology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany 3 Urologische Praxis Straubing, Stadtgraben 1, Straubing, Germany Correspondence to: Ronald Simon, email: r.simon@uke.de Keywords: renal cell tumors; von Hippel-Lindau gene; VHL mutation; 3p copy number; fluorescence in-situ hybridization Received: August 14, 2019 Accepted: December 29, 2019 Published: January 21, 2020 ABSTRACT Purpose: To evaluate prevalence and clinical impact of VHL mutations and deletions (3p), a cohort of consecutive kidney tumors was analyzed by DNA sequencing and fluorescence in-situ hybridization (FISH). Patients and Methods: The study includes 1,805 patients with renal tumors who were surgically treated at the Department of Urology at the University Medical Center Hamburg-Eppendorf between 1994 and 2015. The cohort included 1,176 clear cell, 270 papillary, 101 chromophobe, and 28 clear cell (tubulo) papillary cancers, as well as 149 oncocytomas and 81 less common subtypes. Results: Among 431 successfully analyzed tumors, VHL mutations were found in 59.3% of clear cell, 5.2% of papillary, 3.1% of chromophobe carcinomas and in 7.3% of oncocytomas as well as in the rare kidney tumor types (25%–60%). FISH analysis was successful in 1,403 cases. 3p25 deletion was found in 57.2% of clear cell, 17.6% of papillary, 17.7% of chromophobe carcinomas and in 11.9% of oncocytomas as well as in the rare kidney tumor types (16.7%–50%). No statistically significant associations between VHL mutation/deletion and tumor grade, stage, and clinical outcome was found. Only in the subgroup of papillary cancers, 3p deletion was significantly associated with lymph node and distant metastasis as well as with poor patient outcome ( p < 0.05 each). Conclusions: The presence of a VHL mutation in virtually all renal tumor subtypes suggests that VHL analysis cannot be used to distinguish between renal tumor subtypes. Consequently, anti-VHL treatment strategies should not be limited to patients with clear cell cancer.

To assess the prognostic and diagnostic utility of PSA immunostaining, tissue microarrays containing 17,747 prostate cancers, 3,442 other tumors from 82 different (sub) types and 608 normal tissues were analyzed at two different antibody concentrations (1:100 and 1:800). In normal tissues, PSA expression was limited to prostate epithelial cells. In prostate cancers, PSA staining was seen in 99.9-100% (1:800-1:100) primary tumors, 98.7-99.7% of advanced recurrent cancers, in 84.6-91.4% castration resistant cancers, and in 7.7-18.8% of 16 small cell carcinomas. Among extraprostatic tumors, PSA stained positive in 0-3 (1:800-1:100) of 19 osteosarcomas, 1-2 of 34 ovarian cancers, 0-2 of 35 malignant mesotheliomas, 0-1 of 21 thyroid gland carcinomas and 0-1 of 26 large cell lung cancers. Reduced staining intensity and loss of apical staining were strongly linked to unfavorable tumor phenotype and poor prognosis (p < 0.0001 each). This was all the more the case if a combined "PSA pattern score" was built from staining intensity and pattern. The prognostic impact of the "PSA pattern score" was independent of established pre- and postoperative clinico-pathological prognostic features. In conclusion, PSA immunostaining is a strong prognostic parameter in prostate cancer and has high specificity for prostate cancer at a wide range of antibody dilutions.

Deletion of 12p is a recurrent alteration in prostate cancer, but the prevalence and clinical consequences of this alteration have not been studied in detail. Dual labeling fluorescence in situ hybridization using probes for 12p13 (CDKN1B; p27) and centromere 12 as a reference was used to successfully analyze more than 3700 prostate cancers with clinical follow-up data assembled in a tissue microarray format. CDKN1B was selected as a probe because it is located in the center of the deletion, which spans > 10 Mb and includes > 50 genes in 80% of cancers with 12p deletion. Deletion of 12p was found in 13.7% of cancers and included 13.5% heterozygous and 0.2% homozygous deletions. 12p deletion were linked to advanced tumor stage (p < 0.0001), high Gleason grade (p < 0.0001), rapid tumor cell proliferation (p < 0.0001), lymph node metastasis (p = 0.0004), and biochemical recurrence (p = 0.0027). Multivariate analysis including pT stage (p < 0.0001), Gleason grade (p < 0.0001), pN status (p = 0.0001), preoperative PSA levels (p = 0.0001), and resection margin status (p = 0.0001) revealed an independent prognostic value of 12p deletion (p = 0.0014). Deletion of 12p was unrelated to the ERG fusion status. Deletion of 12p was only marginally linked to reduced p27 expression, which by itself was unrelated to clinical outcome. This argues against p27 as the key target gene of 12p deletions. In summary, the results of our study demonstrate that 12p deletion is frequent in prostate cancer and provides independent prognostic information. 12p deletion analysis alone, or in combination with other prognostic parameters may thus have clinical utility.

// Christoph Burdelski 1, * , Christian Strauss 2, * , Maria Christina Tsourlakis 2 , Martina Kluth 2 , Claudia Hube-Magg 2 , Nathaniel Melling 1 , Patrick Lebok 2 , Sarah Minner 2 , Christina Koop 2 , Markus Graefen 3 , Hans Heinzer 3 , Corinna Wittmer 2 , Till Krech 2 , Guido Sauter 2 , Waldemar Wilczak 2 , Ronald Simon 2 , Thorsten Schlomm 3, 4 , Stefan Steurer 2 1 General, Visceral and Thoracic Surgery Department and Clinic, University Medical Center Hamburg-Eppendorf, Germany 2 Institute of Pathology, University Medical Center Hamburg-Eppendorf, Germany 3 Martini-Clinic, Prostate Cancer Center, University Medical Center Hamburg-Eppendorf, Germany 4 Department of Urology, Section for translational Prostate Cancer Research, University Medical Center Hamburg-Eppendorf, Germany * These authors have contributed equally to this work Correspondence to: Ronald Simon, e-mail: r.simon@uke.de Keywords: TYMS, prostate cancer, TMPRSS2-ERG fusion, tissue microarray, prognosis Received: December 18, 2014 Accepted: January 08, 2015 Published: February 25, 2015 ABSTRACT Thymidylate synthase (TYMS) plays a role in DNA synthesis and is a target for 5-fluorouracil. In this study TYMS was analyzed by immunohistochemistry on a tissue microarray containing 11,152 prostate cancers. TYMS expression was higher in neoplastic than in normal prostate epithelium and was detectable in 72.9% of 10,223 interpretable cancers. It was considered strong in 21.9%, moderate in 33.4% and weak in 17.6% of tumors. TYMS overexpression was associated with deletions at 5q21 ( p < 0.0001), 6q15 ( p < 0.0001) and 3p13 ( p = 0.0083) and gradually increased with the total number of these deletions present in the respective cancer sample ( p < 0.0001). TYMS expression was unrelated to PTEN deletions ( p = 0.9535) but tightly linked to high Gleason grade, advanced pathological tumor stage and early PSA recurrence ( p < 0.0001). The prognostic value of TYMS was independent from the ERG status and deletions at 3p13, 5q21, and 6q15. In multivariate analyses the prognostic role of TYMS expression was independent of Gleason grade, pT stage, preoperative PSA, pN stage, or resection margins. TYMS expression analysis might result in clinically useful information in prostate cancer. The striking link to some but not all chromosomal aberrations might suggest a mechanistical link with specific types of DNA damage.

// Martina Kluth 1, * , Simon Jung 1, * , Omar Habib 1 , Mina Eshagzaiy 1 , Anna Heinl 1 , Nina Amschler 1 , Sawinee Masser 1 , Malte Mader 1 , Frederic Runte 1 , Philipp Barow 1 , Sohall Frogh 1 , Jazan Omari 1 , Christina Moller-Koop 1 , Claudia Hube-Magg 1 , Joachim Weischenfeldt 2 , Jan Korbel 2 , Stefan Steurer 1 , Till Krech 1 , Hartwig Huland 3 , Markus Graefen 3 , Sarah Minner 1 , Guido Sauter 1 , Thorsten Schlomm 3, 4 and Ronald Simon 1 1 Institute of Pathology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany 2 Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany 3 Martini-Clinic, Prostate Cancer Center, University Medical Center Hamburg-Eppendorf, Hamburg, Germany 4 Department of Urology, Section for Translational Prostate Cancer Research, University Medical Center Hamburg-Eppendorf, Hamburg, Germany * These authors have contributed equally to this work Correspondence to: Ronald Simon, email: r.simon@uke.de Keywords: prostate cancer; deletion lengthening; 6q; 16q; tissue microarray Received: September 11, 2017 Accepted: September 16, 2017 Published: November 11, 2017 ABSTRACT Prostate cancer is characterized by recurrent deletions that can considerably vary in size. We hypothesized that large deletions develop from small deletions and that this “deletion lengthening” might have a “per se” carcinogenic role through a combinatorial effect of multiple down regulated genes. In vitro knockdown of 37 genes located inside the 6q12-q22 deletion region identified 4 genes with additive tumor suppressive effects, further supporting a role of the deletion size for cancer aggressiveness. Employing fluorescence in-situ hybridization analysis on prostate cancer tissue microarrays, we determined the deletion size at 6q and 16q in more than 3,000 tumors. 16q and 6q deletion length was strongly linked to poor clinical outcome and this effect was even stronger if the length of both deletions was combined. To study deletion lengthening in cancer progression we eventually analyzed the entire cancers from 317 patients for 6q and 16q deletion length heterogeneity and found that the deletion expanded within 50-60% of 6q and 16q deleted cancers. Taken together, these data suggest continuous “deletion lengthening” as a key mechanism for prostate cancer progression leading to parallel down regulation of genes with tumor suppressive properties, some of which act cooperatively.

Deletion of 12p is a recurrent alteration in prostate cancer, but the prevalence and clinical consequences of this alteration have not been studied in detail. Dual labeling fluorescence in situ hybridization using probes for 12p13 (CDKN1B; p27) and centromere 12 as a reference was used to successfully analyze more than 3700 prostate cancers with clinical follow-up data assembled in a tissue microarray format. CDKN1B was selected as a probe because it is located in the center of the deletion, which spans > 10 Mb and includes > 50 genes in 80% of cancers with 12p deletion. Deletion of 12p was found in 13.7% of cancers and included 13.5% heterozygous and 0.2% homozygous deletions. 12p deletion were linked to advanced tumor stage (p < 0.0001), high Gleason grade (p < 0.0001), rapid tumor cell proliferation (p < 0.0001), lymph node metastasis (p = 0.0004), and biochemical recurrence (p = 0.0027). Multivariate analysis including pT stage (p < 0.0001), Gleason grade (p < 0.0001), pN status (p = 0.0001), preoperative PSA levels (p = 0.0001), and resection margin status (p = 0.0001) revealed an independent prognostic value of 12p deletion (p = 0.0014). Deletion of 12p was unrelated to the ERG fusion status. Deletion of 12p was only marginally linked to reduced p27 expression, which by itself was unrelated to clinical outcome. This argues against p27 as the key target gene of 12p deletions. In summary, the results of our study demonstrate that 12p deletion is frequent in prostate cancer and provides independent prognostic information. 12p deletion analysis alone, or in combination with other prognostic parameters may thus have clinical utility.

// Martina Kluth 1, * , Maximilian Graunke 1, * , Christina Moller-Koop 1 , Claudia Hube-Magg 1 , Sarah Minner 1 , Uwe Michl 2 , Markus Graefen 2 , Hartwig Huland 2 , Raisa Pompe 2 , Frank Jacobsen 1 , Andrea Hinsch 1 , Corinna Wittmer 1 , Patrick Lebok 1 , Stefan Steurer 1 , Franziska Buscheck 1 , Till Clauditz 1 , Waldemar Wilczak 1 , Guido Sauter 1 , Thorsten Schlomm 2, 3 , Ronald Simon 1 1 Institute of Pathology, Prostate Cancer Center at University Medical Center Hamburg-Eppendorf, Germany 2 Martini-Clinic, Prostate Cancer Center at University Medical Center Hamburg-Eppendorf, Germany 3 Department of Urology, Section for prostate cancer research, University Medical Center Hamburg-Eppendorf, Germany * These authors contributed equally to this work Correspondence to: Ronald Simon, email: r.simon@uke.de Keywords: 18q deletion, prostate cancer, prognosis, tissue microarray Received: September 27, 2016 Accepted: November 02, 2016 Published: November 16, 2016 ABSTRACT Deletion of 18q recurrently occurs in prostate cancer. To evaluate its clinical relevance, dual labeling fluorescence in-situ hybridization (FISH) using probes for 18q21 and centromere 18 was performed on a prostate cancer tissue microarray (TMA). An 18q deletion was found in 517 of 6,881 successfully analyzed cancers (7.5%). 18q deletion was linked to unfavorable tumor phenotype. An 18q deletion was seen in 6.4% of 4,360 pT2, 8.0% of 1,559 pT3a and 11.8% of 930 pT3b-pT4 cancers ( P < 0.0001). Deletions of 18q were detected in 6.9% of 1,636 Gleason ≤ 3 + 3, 6.8% of 3,804 Gleason 3 + 4, 10.1% of 1,058 Gleason 4+3, and 9.9% of 344 Gleason ≥ 4 + 4 tumors ( P = 0.0013). Deletions of 18q were slightly more frequent in ERG-fusion negative (8.2%) than in ERG-fusion positive cancers (6.4%, P = 0.0063). 18q deletions were also linked to biochemical recurrence (BCR, P < 0.0001). This was independent from established pre- and postoperative prognostic factors ( P ≤ 0.0004). In summary, the results of our study identify 18q deletion as an independent prognostic parameter in prostate cancer. As it is easy to measure, 18q deletion may be a suitable component for multiparametric molecular prostate cancer prognosis tests.

HOXB13 is a prostate cancer susceptibility gene which shows a cancer predisposing (G84E) mutation in 0.1–0.6% of males. We analyzed the prognostic impact of HOXB13 expression by immunohistochemistry on a tissue microarray containing more than 12,400 prostate cancers. Results were compared to tumor phenotype, biochemical recurrence, androgen receptor (AR) and prostate specific antigen (PSA) as well as molecular subtypes defined by ERG status and genomic deletions of 3p, 5q, 6q, and PTEN. HOXB13 immunostaining was detectable in 51.7% of 10,216 interpretable cancers and considered strong in 9.6%, moderate in 19.7% and weak in 22.3% of cases. HOXB13 expression was linked to advanced pT stage, high Gleason grade, positive lymph node status (p < 0.0001 each), high pre-operative PSA levels (p = 0.01), TMPRSS2:ERG fusion, PTEN deletions, AR expression, cell proliferation, reduced PSA expression and early PSA recurrence (p < 0.0001 each). The prognostic value of HOXB13 was independent from established parameters including Gleason, stage, nodal stage and PSA. Co-expression analysis identified a subset of tumors with high HOXB13 and AR but low PSA expression that had a particularly poor prognosis. HOXB13 appears to be a promising candidate for clinical routine tests either alone or in combination with other markers, including AR and PSA.