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The 3D instability of the spontaneous fast magnetic reconnection process is studied with magnetohydrodynamics (MHD) simulations, where the 2D model of the spontaneous fast magnetic reconnection is destabilized in three dimension. As well known in many 2D numerical MHD studies, when a 1D current sheet is destabilized with the current-driven anomalous resistivity, the 2D Petschek type fast magnetic reconnection is established. This paper shows that the 2D Petschek type fast magnetic reconnection can be destabilized in three dimension by an initial resistive disturbance which includes a weak fluctuation in the sheet current direction, i.e., along the magnetic neutral line. The resulting 3D fast magnetic reconnection finally becomes intermittent and random through a 3D instability. In addition, it is also shown that the 3D instability is suppressed by the uniform resistivity. It suggests that the 3D instability is caused in the Petschek-type reconnection process which is characterized by a strongly localized magnetic diffusion region and the slow shock acceleration of the plasma jets and is suppressed in the Sweet-Parker type reconnection process. [ABSTRACT FROM AUTHOR]