Search

Background and Aims: Understanding microbial compositions and functions in arable soils is crucial for effective agroecosystem management. While many studies have explored this topic, large-scale investigations are lacking, resulting in the absence of consistent and reliable patterns of communities and functions of soil microorganisms. Methods: To address this gap, we performed an integrated analysis of published sequencing data from the soils of three main arable fields: upland, paddy, and paddy-upland rotation. Results: Bacterial diversity (richness, Shannon) was highest in upland soils. Actinobacteria and Planctomycetes were enriched in upland soils, while Proteobacteria, Chloroflexi, and Nitrospirae preferred paddy and paddy-upland rotation soils. Bacteria in upland soils have a greater functional potential to decompose aromatic compounds, as well as for chitinolysis and ureolysis. Methanotrophy, methylotrophy, sulfur-related respiration, and most nitrogen metabolic processes were enriched in paddy fields. Bacteria in upland soils are characterized by increased dormancy potential and a faster response to resource input than those in paddy and paddy-upland rotation soils. Stochastic processes poorly contribute to the bacterial assembly in paddy soils, indicating strong environmental filtering due to anaerobic conditions. The spatial turnover in bacterial community composition was much faster than the functional potential, indicating high functional redundancy, especially in paddy soils. Edaphic factors were the major contributors to bacterial composition, whereas the cropland type influenced the predicted functions. Conclusions: Land use defines microbial composition, functional attributes, and ecological characteristics (e.g., dormancy potential, assembly processes, and functional redundancy). These findings deepen our knowledge of microbial biogeographic patterns in soils of agricultural ecosystems and provide new insights into sustainable cropland management. [ABSTRACT FROM AUTHOR]

Background and aims: Considering the global demands in sustaining agriculture, use of organic amendments is gradually increasing. An improved understanding of the biological process is essential to evaluate the performance of organic amendments on agro-ecosystem.Methods: Soils subjected to different fertilization regimes were collected from a field experiment. Microbial community compositions are assessed with 16S and ITS rRNA gene sequencing and subsequent bioinformatics analysis. Microbial functions are characterized with the geometric mean of the assayed enzyme activities (GMea) and the microbial carbon-use efficiency:nitrogen-use efficiency ratio (CUE:NUE).Results: Compared with the chemically fertilized soil, the GMea significantly increased in organically amended soils. In contrast, the CUE:NUE was highest in chemically treated soil. These changes of microbial functional indicators were associated with shifts in the bacterial and not the fungal community composition, despite the fact that both the bacterial and fungal community compositions were significantly affected by the fertilization regimes. The abundances of specific soil bacterial taxa, especially the genera Luteimonas and Gemmatimona, were enriched by organic amendments. Soil organic carbon emerged as the major determinant of the bacterial community composition.Conclusions: Soil microbial activities and nutrient-use efficiencies were dramatically changed along with the alteration of bacterial community composition. Relatively greater abundance of Luteimonas and Gemmatimona taxa in soils might be useful indicators for soil amelioration. Our research could be helpful to provide better strategies for the maintenance of soil fertility. [ABSTRACT FROM AUTHOR]

Background and aims: Paenibacillus spp. are widely considered to impact the fertility and health of soil. The aim of this study was to evaluate how different fertilization regimes affect the population size and community structure of Paenibacillus spp. over a long period of time in red soil. Methods: Soil samples were collected from a long-term experiment and were then analyzed using real-time PCR and PCR-DGGE. The correlation analysis, PCA and RDA were used to explore the relationships among Paenibacillus spp. population, community structure and soil properties in different treatments. Results: The pH was seriously decreased only by the application of chemical fertilizer. The largest population of Paenibacillus spp. was found in the soil treated with organic fertilizer application, while the richest diversity was observed in the soil treated only with the chemical fertilizer. The Paenibacillus spp., Paenibacillus alkaliterrae, Paenibacillus campinasensis, and Paenibacillus xylanilyticus were found in all treatments. Paenibacillus castaneae was found in the soil treated with NPK, and Paenibacillus pabuli was specifically observed in the lime-amended treatment. Paenibacillus taichungensis and Paenibacillus prosopidis were detected in the soil treated with only chemical fertilizer. Except for the ammonium and pH, all the tested soil fertility parameters (total C, total N, nitrate, available K and available P) could significantly affect both the Paenibacillus spp. population number and diversity. The soil pH was significantly correlated with Paenibacillus spp. diversity only. Conclusions: Our results indicate that the different long-term fertilization regimes have varied impact on both the Paenibacillus spp. population size and the diversity of the community associated with the soil properties tested. These results can help to enrich the information on the response of beneficial soil microbes to different long-term fertilization regimes. [ABSTRACT FROM AUTHOR]

Background and aims: Above- and belowground biodiversity determines the capacity of ecosystems to provide multiple functions simultaneously (i.e., multifunctionality), while their relative importance along environmental gradients remains unclear. Our objective of this study was to investigate how plant and microbial diversity along an altitudinal gradient affected soil multifunctionality in grasslands.The effects of plant and microbial (including bacteria, fungi and archaea) diversity on soil multifunctionality were estimated along a 2300 m altitudinal gradient across six grassland types in the Tianshan Mountain, China. The soil multifunctionality was calculated based on 12 parameters related to carbon, nitrogen, phosphorous cycling, and soil nutrient status.The relative importance of plant and microbial diversity to soil multifunctionality shifted at an altitude of 1900 m while threshold for each soil function varied along altitudinal gradient. At low altitudes (< 1900 m), plant species richness showed a robust positive effect and had a more substantial impact on soil multifunctionality than microbial diversity. Altitude had a significant effect on plant species richness via indirect means by altering soil moisture. At high altitudes (> 1900 m), soil multifunctionality was influenced by a combination of plant and microbial diversity. Similarly, fungal richness was positively associated with soil multifunctionality, while archaeal richness had the opposite effect.The effect of plant and soil microbial diversity on soil multifunctionality was mediated by altitude in grasslands, which can guide the restoration efforts aimed to maximize soil multifunctionality in grassland ecosystems.Methods: Above- and belowground biodiversity determines the capacity of ecosystems to provide multiple functions simultaneously (i.e., multifunctionality), while their relative importance along environmental gradients remains unclear. Our objective of this study was to investigate how plant and microbial diversity along an altitudinal gradient affected soil multifunctionality in grasslands.The effects of plant and microbial (including bacteria, fungi and archaea) diversity on soil multifunctionality were estimated along a 2300 m altitudinal gradient across six grassland types in the Tianshan Mountain, China. The soil multifunctionality was calculated based on 12 parameters related to carbon, nitrogen, phosphorous cycling, and soil nutrient status.The relative importance of plant and microbial diversity to soil multifunctionality shifted at an altitude of 1900 m while threshold for each soil function varied along altitudinal gradient. At low altitudes (< 1900 m), plant species richness showed a robust positive effect and had a more substantial impact on soil multifunctionality than microbial diversity. Altitude had a significant effect on plant species richness via indirect means by altering soil moisture. At high altitudes (> 1900 m), soil multifunctionality was influenced by a combination of plant and microbial diversity. Similarly, fungal richness was positively associated with soil multifunctionality, while archaeal richness had the opposite effect.The effect of plant and soil microbial diversity on soil multifunctionality was mediated by altitude in grasslands, which can guide the restoration efforts aimed to maximize soil multifunctionality in grassland ecosystems.Results: Above- and belowground biodiversity determines the capacity of ecosystems to provide multiple functions simultaneously (i.e., multifunctionality), while their relative importance along environmental gradients remains unclear. Our objective of this study was to investigate how plant and microbial diversity along an altitudinal gradient affected soil multifunctionality in grasslands.The effects of plant and microbial (including bacteria, fungi and archaea) diversity on soil multifunctionality were estimated along a 2300 m altitudinal gradient across six grassland types in the Tianshan Mountain, China. The soil multifunctionality was calculated based on 12 parameters related to carbon, nitrogen, phosphorous cycling, and soil nutrient status.The relative importance of plant and microbial diversity to soil multifunctionality shifted at an altitude of 1900 m while threshold for each soil function varied along altitudinal gradient. At low altitudes (< 1900 m), plant species richness showed a robust positive effect and had a more substantial impact on soil multifunctionality than microbial diversity. Altitude had a significant effect on plant species richness via indirect means by altering soil moisture. At high altitudes (> 1900 m), soil multifunctionality was influenced by a combination of plant and microbial diversity. Similarly, fungal richness was positively associated with soil multifunctionality, while archaeal richness had the opposite effect.The effect of plant and soil microbial diversity on soil multifunctionality was mediated by altitude in grasslands, which can guide the restoration efforts aimed to maximize soil multifunctionality in grassland ecosystems.Conclusion: Above- and belowground biodiversity determines the capacity of ecosystems to provide multiple functions simultaneously (i.e., multifunctionality), while their relative importance along environmental gradients remains unclear. Our objective of this study was to investigate how plant and microbial diversity along an altitudinal gradient affected soil multifunctionality in grasslands.The effects of plant and microbial (including bacteria, fungi and archaea) diversity on soil multifunctionality were estimated along a 2300 m altitudinal gradient across six grassland types in the Tianshan Mountain, China. The soil multifunctionality was calculated based on 12 parameters related to carbon, nitrogen, phosphorous cycling, and soil nutrient status.The relative importance of plant and microbial diversity to soil multifunctionality shifted at an altitude of 1900 m while threshold for each soil function varied along altitudinal gradient. At low altitudes (< 1900 m), plant species richness showed a robust positive effect and had a more substantial impact on soil multifunctionality than microbial diversity. Altitude had a significant effect on plant species richness via indirect means by altering soil moisture. At high altitudes (> 1900 m), soil multifunctionality was influenced by a combination of plant and microbial diversity. Similarly, fungal richness was positively associated with soil multifunctionality, while archaeal richness had the opposite effect.The effect of plant and soil microbial diversity on soil multifunctionality was mediated by altitude in grasslands, which can guide the restoration efforts aimed to maximize soil multifunctionality in grassland ecosystems. [ABSTRACT FROM AUTHOR]