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Carrot is a major root vegetable crop grown in many parts of the world. In Europe, cavity spot disease continues to have a major impact on marketable yield. The disease is caused by several Pythium spp., with P. violae the main pathogen in the UK and results in small black lesions on mature carrot roots. The lack of reliable inoculation methods for these Pythium pathogens has, for many years, hampered the identification of new effective crop protection products or carrot varieties that are resistant to the disease. In this research, inoculation methods were developed for P. violae using mycelium or oospores, each of which successfully induced typical cavity spot symptoms in both pot‐ and field‐grown carrots as well as consistent root stunting in the former. These methods were also used to successfully identify carrot cultivars with resistance to cavity spot and confirmed the efficacy of the fungicide metalaxyl‐M against the disease. Results therefore demonstrated that the inoculation methods should be reliable for identifying the efficacy of crop protection products, assessing cavity spot resistance and for further studies investigating the biology and epidemiology of the pathogen. [ABSTRACT FROM AUTHOR]

Plant resistance inducers (PRIs) are of increasing interest for disease control in sustainable viticulture, but their efficacy in vineyards is still under investigation. We studied the effects of four commercial PRIs, of natural and microbial origin, on the development of powdery mildew (PM) on grapevine leaves over a 3‐year period. Disease and sporulation severity were evaluated following the artificial inoculation of PRI‐treated leaves with Erysiphe necator conidia at 1, 3, 7 and 12 days after treatment (DAT). Laminarin (LAM) and cos‐oga (COS) were the most effective in reducing both disease (57.1% and 49.5%, respectively) and sporulation (85.3% and 90.2%, respectively) severity; the reduction in PM severity provided by cerevisane (CER) was lower (27%), and that of Pythium oligandrum (PYT) was intermediate (44.9%). LAM was effective from 1 DAT, while COS and PYT were more effective when E. necator was inoculated at 7 to 12 DAT. These results open new perspectives on how PRIs are used as single, preventative interventions performed 1 to 3 days before E. necator infection, depending on the product used. The effect of PRIs on the sporulation of E. necator colonies also suggests a broader and longer effect on PM epidemics. [ABSTRACT FROM AUTHOR]

In Brazil there is little information on the reaction of soybean cultivars to Globisporangium and Pythium species that can cause damping‐off. Thus, the objective of this study was to characterize the reactions to Globisporangium irregulare isolate UPFOM03, G. ultimum var. sporangiiferum isolate UPFPAN06 and Pythium conidiophorum isolate UPFSA03 of 50 cultivars adapted to southern Brazil. The experiment was carried out twice in a randomized complete block design with three replications. A root rot assay was performed in a growth chamber and emergence (%), emergence speed index (ESI), total dry mass per seedling (TDM; g) and root rot severity index (RRSI) were determined. There was a significant (p < 0.05) difference among the cultivars on all the variables. The least susceptible cultivars to G. irregulare were BRS 5804, BMX Compacta, FPS 1867, BMX Fibra, BMX Apolo, M6410, M6210, BMX Elite and BRS 5601. However, the least susceptible cultivars to G. ultimum var. sporangiiferum were M6410, M6210, BMX Tornado, NS 6601, NS 5258, NS 6909, BMX Fibra, FPS 1954, M5917, BMX Delta, FPS 1867, BMX Cromo, NEO 610, BMX Elite, DM 61i59, BMX Apolo, BMX Compacta and M5947. Thirty‐six soybean cultivars were less susceptible to P. conidiophorum, which was also less aggressive than G. irregulare and G. ultimum var. sporangiiferum. In conclusion, there are some soybean cultivars that are less susceptible to the three oomycete isolates and should be preferred in fields with a history of damping‐off. [ABSTRACT FROM AUTHOR]

In the last years, leafy vegetables cultivated as baby leaves have been established in the market and have attracted the interest of consumers throughout the world. During the growing seasons of 2019 and 2020, 97 isolates of Rhizoctonia solani and 112 isolates of Pythium spp. were obtained from baby leaf vegetables exhibited damping‐off symptoms. Representative isolates of R. solani from each surveyed plant species were characterized using sequence analysis of the internal transcribed spacer (rDNA‐ITS) region. Isolates were identified as belonging to four anastomosis groups (AGs): AG2‐1, AG‐IB, AG4‐HGI and AG4‐HGIII. AG4‐HGI was the most prevalent group and phylogenetic analysis showed that the isolates were distinctly separated according to their AGs. Pathogenicity among the four AGs on 23 plant species varied considerably, from not susceptible to highly susceptible, while, in general, AGs did not exhibit host specificity. Furthermore, a total of 112 Pythium spp. isolates were obtained. The ITS region and the cytochrome oxidase II (coxII) gene were amplified, and three Pythium spp. were identified (P. ultimum, P. aphanidermatum and P. sylvaticum), which were used further for maximum‐likelihood phylogenetic analysis. The pathogenicity of representative isolates was assessed in vitro and in vivo on 10 plant species. In general, all three tested Pythium spp. were virulent when used in vitro, while P. ultimum was the most virulent in vivo. This is the first comprehensive study aimed at determining the occurrence of specific R. solani AGs and Pythium spp. derived from baby leafy vegetables exhibiting damping‐off symptoms in Greece. [ABSTRACT FROM AUTHOR]

The study of oomycetes associated with crops is highly important due to the economic losses they might cause. In cacao, the genus Phytophthora has been extensively studied, but little is known about other genera and species of oomycetes associated with this plant. This study aimed to determine the oomycetes' diversity present in Colombian cacao crops. A total of 146 isolates were obtained from diseased plants and soil in 11 departments. Analysis of internal transcribed spacer (ITS) and cytochrome oxidase subunit I (coxI) sequences was performed along with the assessment of morphological characteristics. Nine species were identified, distributed in four genera: Phytophthora (P. palmivora, 54%; P. nicotianae, 1%), Phytopythium (Phy. chamaehyphon, 15%; Phy. cucurbitacearum, 9%; Phy. vexans, 7%; Phy. helicoides, 1%), Globisporangium (G. splendens, 3%), and Pythium (Py. delicense, 1%; Py. inflatum,1%). Additionally, an unidentified and possibly new species of Phytophthora (5%) and three unidentified species of Phytopythium (3%) were found. This is the first report of Globisporangium, Phytopythium, and Pythium in cacao crops of Colombia and the first report of the species Phy. chamaehyphon in the country. Interestingly, some isolates of Phytopythium spp. were isolated from necrotic leaves and vascular section of stems, which may suggest a role in cacao diseases traditionally associated with Phytophthora. Also, it is proposed that the new species of Phytophthora may be contributing significantly to black pod disease in Colombian cacao crops, and we highlight that the study of P. palmivora is urgent because of its distribution all over the country. [ABSTRACT FROM AUTHOR]

Damping‐off of soybean is a common problem in some fields in southern Brazil. Frequently, Phytophthora sojae has been pointed out as the main causal agent. However, questions were raised as to whether other oomycetes could also be present. Hence, the objectives of this study were to isolate, identify, and determine the pathogenicity and aggressiveness of oomycetes isolated from soybean seedlings. Thirty‐three isolates were obtained from 13 fields. Isolates were identified based on morphology and molecular methods. Nine species were recovered: Pythium conidiophorum (n = 14, 42.4%), Globisporangium rostratifingens (n = 7, 21.2%), G. irregulare (n = 2, 6.1%), G. spinosum (n = 1, 3.0%), G. ultimum var. sporangiiferum (n = 2, 6.1%), Pythium acanthicum (n = 2, 6.1%), P. deliense (n = 1, 3.0%), P. inflatum (n = 1, 3.0%), and P. torulosum (n = 3, 9.1%). Pathogenicity and aggressiveness were determined with two soybean cultivars (DM57i52 and NEO530) in a seed rot assay and a root rot assay. All isolates were pathogenic to soybean with variable levels of aggressiveness in both assays. The range of seed disease severity index varied from 7.5 to 100 for DM57i52 and from 23.1 to 100 for NEO530. The mean root disease severity index of the soybean cultivars ranged from 29.4 to 92.8. This is the first official report of G. irregulare, G. rostratifingens, G. spinosum, G. ultimum var. sporangiiferum, P. acanthicum, P. conidiophorum, P. deliense, P. inflatum, and P. torulosum causing damping‐off of soybean in the state of Rio Grande do Sul in southern Brazil. [ABSTRACT FROM AUTHOR]

Pythium and Phytopythium spp. cause seed decay, damping off, and root rot in soybean, wheat, and many other crops. However, their diversity and importance as pathogens, particularly in different crop rotation systems, are largely unknown. A survey was conducted in the Huang‐Huai region, one of the main areas of soybean–wheat rotation farming in China. In 2016–2018, we collected 300 soybean seedlings and 150 field soil samples from several representative locations, and identified 26 Pythium and 6 Phytopythium spp. from 212 isolates, based on internal transcribed spacer 2 (ITS2) and cytochrome oxidase subunit 1 sequences. The pathogenicity of these isolates was evaluated by growing soybean and wheat seeds in dishes and pots containing oomycete cultures. We found that 12 Pythium spp. (but no Phytopythium spp.) showed high pathogenicity on soybean and/or wheat, and nine of them (75%) were highly pathogenic on both crops. Among the nine species, Pythium spinosum, Pythium ultimum, Pythium species 1 (tentatively designated as 'Candidatus Pythium huanghuaiense'), Pythium aphanidermatum, and Pythium myriotylum were highly abundant among all isolates (15%, 10%, 9%, 8%, and 5%, respectively). Nine species were selected for testing of sensitivity to the fungicides metalaxyl and mefenoxam. The EC50 values were all less than 10 μg/ml, indicating little resistance. Minimum inhibitory concentration values indicated isolates were about twice as sensitive to mefenoxam as to metalaxyl. These results provide a systematic understanding of Pythium and Phytopythium species associated with soybean in the Huang‐Huai region, which is important for disease management and breeding programmes. [ABSTRACT FROM AUTHOR]

The soilborne fungi Sclerotinia sclerotiorum, Rhizoctonia solani and the oomycete Pythium ultimum are among the most destructive pathogens for lettuce production. The application of the biocontrol agent Paenibacillus alvei K165 to the transplant soil plug of lettuce resulted in reduced S. sclerotiorum, R. solani and P. ultimum foliar symptoms and incidence compared to untreated controls, despite the suppressive effect of the pathogens on the rhizosphere population of K165. In vitro, K165 inhibited the growth of S. sclerotiorum and R. solani but not P. ultimum. Furthermore, the expression of the pathogenesis‐related (PR) gene PR1, a marker gene of salicylic acid (SA)‐dependent plant defence, and of the Lipoxygenase (LOX) and Ethylene response factor 1 (ERF1) genes, markers of ethylene/jasmonate (ET/JA)‐dependent plant defence was recorded. K165‐treated plants challenged with P. ultimum showed up‐regulation of PR1, whereas challenge with R. solani resulted in up‐regulation of LOX and ERF1, and challenge with S. sclerotiorum resulted in up‐regulation of PR1, LOX and ERF1. This suggests that K165 triggers the SA‐ and the ET/JA‐mediated induced systemic resistance against P. ultimum and R. solani, respectively, while the simultaneous activation of the SA and ET/JA signalling pathways is proposed for S. sclerotiorum. [ABSTRACT FROM AUTHOR]

Root rots ( RR) are the main cause of declining bean ( Phaseolus vulgaris) production in southwestern Uganda. Here, beans are mainly intercropped/rotated with maize ( Zea mays), sorghum ( Sorghum bicolor), sweet potato ( Ipomoea batatas), potatoes ( Solanum tuberosum) and garden peas ( Pisum sativum). These crops also suffer from RR and bean RR pathogens have been isolated from some of these crops. This study aimed to determine the extent of RR on maize, sorghum and peas, and their potential to contribute to the survival of bean RR pathogens. Therefore, experiments were carried out in bean RR-infested farmers' fields as well as soils inoculated with bean RR pathogens ( Pythium spp. and Fusarium spp.) under screen house conditions and a susceptible bean cultivar served as a control. High RR incidence/severity scores were recorded in beans and sorghum in both farmers' fields and screen house experiments. The high field RR incidence/severity in sorghum correlated with the screen house scores. This study shows that RR is also a problem to other crops, especially sorghum, warranting attention. The findings also imply that sorghum plays a potential role as an alternate host to bean RR pathogens, increasing inoculum density of bean RR pathogens and potentially negatively impacting the bean RR problem. Intercropping or rotating beans with sorghum in this region is not recommended. However, maize was RR-resistant and therefore appropriate as an intercrop/rotational crop to beans in the system. A holistic rather than commodity approach is recommended for managing RR in this cropping system. [ABSTRACT FROM AUTHOR]

Agricultural run-off sedimentation reservoirs are an emerging aquatic system of critical importance to plant biosecurity, water and environmental sustainability. Oomycete pathogens such as Phytophthora and Pythium species in irrigation water have been demonstrated to pose significant risks to ornamental crops, but little is known about their diversity and populations in sediments of agricultural irrigation systems. This study investigated the oomycete communities including Phytophthora ( Ph.), Phytopythium ( Pp.) and Pythium ( Py.) species in sediments at various depths of an agricultural run-off sedimentation reservoir in Virginia during the winters of 2011 and 2015. The recovery of these oomycetes declined sharply with sediment depth from surface to 0·8 m and none was recovered from sediments deeper than 1·4 m. A total of 47 oomycete species were recovered, with all four species of Phytophthora and five of Phytopythium exclusively from the surface. Recovered species included many important plant pathogens such as Ph. nicotianae, Ph. pini, Ph. tropicalis, Pp. vexans, Py. irregulare and Py. monospermum. These results underline the importance of decontaminating sediments excavated from top layers (0-1·4 m) of the sedimentation reservoir before reuse in plant production. [ABSTRACT FROM AUTHOR]

A transposon-like element, A3aPro, with multiple copies in the Phytophthora sojae genome, was identified as a suitable detection target for this devastating soyabean root rot pathogen. The PCR primers TrapF1/TrapR1 were designed based on unique sequences derived from the transposon-like sequence. A 267-bp DNA fragment was amplified using this primer pair, the specificity of which was evaluated against 118 isolates of P. sojae, 72 isolates of 25 other Phytophthora spp., isolates of Pythium spp. and isolates of true fungi. In tests with P. sojae genomic DNA, detection sensitivities of 10 pg and 10 fg DNA were achieved in standard PCR (TrapF1/TrapR1) and nested PCR (TrapF1/TrapR1 and TrapF2/TrapR2), respectively. Meanwhile, PCR with TrapF1/TrapR1 primers detected the pathogen at the level of a single oospore, and even one zoospore. These primers also proved to be efficient in detecting pathogens from diseased soyabean tissues, residues and soils. In addition, real-time quantitative PCR (qPCR) assays coupled with the TrapF1/TrapR1 primers were developed to detect and quantify the pathogen. The results demonstrated that the TrapF1/TrapR1 and TrapF2/TrapR2 primer-based PCR assay provides a rapid and sensitive tool for the detection of P. sojae in plants and in production fields. [ABSTRACT FROM AUTHOR]

The cultivation of aerobic rice in the tropics enables farmers to save water without lowering productivity. Unfortunately, this system suffers from declining yields due to a disease complex involving nematodes, pathogenic Pythium spp. and nutrient deficiencies. Assessing the impact of each underlying factor can contribute to efficient disease control measures. This study therefore investigated pathogenic and genotypic variability among Pythium species from affected aerobic rice fields in the Philippines using pathogenicity assays and sequence information from the internal transcribed spacer (ITS) region and β-tubulin gene. Three closely related Pythium spp., P. arrhenomanes, P. graminicola and P. inflatum, were recovered from affected aerobic rice fields. All P. arrhenomanes isolates reduced rice seedling growth, whereas only a few P. graminicola isolates and no P. inflatum isolates were pathogenic, indicating that P. arrhenomanes is probably the most important species affecting rice. Both P. arrhenomanes and P. graminicola isolates showed little genetic variation, despite the observed pathogenic variation within P. graminicola. Intraspecific variation was higher among P. inflatum isolates, but again no correlation was observed with phenotype. When screening P. arrhenomanes isolates from other hosts such as sugarcane, maize and several grasses, a link between pathogenic and genetic variability was detected. However, rice and maize isolates seemed to lack host specificity, and therefore crop rotation with maize might be a risky strategy to manage yield decline in Philippine aerobic rice fields. [ABSTRACT FROM AUTHOR]

A detached leaf assay was developed to determine the pathogenicity of Pythium isolates to cut-flower chrysanthemum roots. Leaves from young plants were excised and inoculated by insertion of a plug of mycelium into a slit cut in the excised petiole. After incubation leaves were assessed for presence and extent of necrosis. Necrosis indicated pathogenicity and was consistently confirmed by comparisons with whole plant inoculations. The rate of necrosis spread also gave some indication of virulence. Isolates of Pythium sylvaticum, P. ultimum and HS group were the most virulent, with a mean rate of spread of 14·6 mm per day, significantly ( P < 0·05) faster than the mean rate of spread, 1·6 mm per day, of less virulent isolates. Less virulent isolates included P. irregulare, P. oligandrum and P. aphanidermatum. The latter was unexpected, as P. aphanidermatum is an important species in pythium root rot epidemics in chrysanthemums elsewhere. The value of the detached leaf assay for screening large numbers of isolates was demonstrated in a survey of isolates from clinic samples from chrysanthemum nurseries and in a series of dilution-plating experiments looking at numbers of Pythium propagules in commercial chrysanthemum beds showing root rot. In the survey, the predominant pathogenic species was identified as P. sylvaticum and the most likely source of infection was contaminated soil as opposed to blocking media or irrigation water, whilst in soil colonization studies the use of detached leaf assays demonstrated a relationship between pathogenic inoculum concentration in soil and the expression of root rot symptoms. [ABSTRACT FROM AUTHOR]

Experiments were conducted in irrigation runoff containment basins to assess the effects of bait species ( Camellia japonica, Ilex crenata or Rhododendron catawbiense), bait type (whole leaf vs. leaf disc), baiting duration (1, 2, 7 or 14 days), baiting depth and growth media (modified PARP-V8 or PARPH-V8) on the recovery of Phytophthora species. A two-rope, flexible bait-deployment system was compared with a one-rope fixed system for bait stability at designated locations and depths. A total of 907 Phytophthora isolates were subjected to PCR-based single-strand conformation polymorphism (PCR-SSCP) analysis to identify to species level. Seven distinct SSCP patterns representing six morphospecies: P. citricola (Cil I), P. citrophthora (Cip I), P. hydropathica (Hyd), P. insolita (Ins), P. megasperma (Meg I & II) and an unidentified Phytophthora species were identified. Irrespective of culture medium, 7 days of baiting with rhododendron leaves consistently resulted in the recovery of the greatest diversity and populations of Phytophthora species with minimum interference from Pythium species. The flexible bait-deployment system was superior to the fixed system, minimizing the risk of bait loss and dislocation of baiting units and allowing baits to remain at designated depths from the surface under inclement weather. [ABSTRACT FROM AUTHOR]

The pathogenicity of an isolate of a Pythium species from Signy Island in the South Orkney Islands was tested against the Antarctic hairgrass Deschampsia antarctica. The isolate was found to infect plants at 8ºC and to cause foliar and root symptoms similar to those seen in other Pythium infections in grasses. Analysis of ribosomal RNA sequences placed it, together with another isolate from Antarctica, in a clade that included the known snow moulds caused by Pythium spp. Sporangia and oogonia were produced in culture, but the isolate differed from other Pythium spp. in producing chlamydospores in older cultures and plant tissue. This is the first report of a pathogen of an eukaryotic vascular plant in the maritime Antarctic region. [ABSTRACT FROM AUTHOR]

On the basis of ITS sequences PCR primers were designed for the identification of the five Pythium species found to be most important for the development of carrot cavity spot in Norway: P. intermedium, P. sulcatum, P. sylvaticum, P. violae and P. ‘ vipa’. The P. ‘ vipa’ isolates had a unique ITS sequence, differed morphologically from all other Pythium isolates, and thus probably represent a new species. The PCR primers were species-specific with no cross-reaction to other Pythium species or to fungal isolates from carrot tested. The detection limits varied for the different primer pairs. The two most sensitive assays allowed detection of as little as 5 fg DNA. All five Pythium species could be detected in lesions from diseased carrots. Weak positive signals were obtained from some carrot samples without symptoms. PCR assays allowed detection of pathogens in soil. In samples of soil known to produce cavity spots on cropped carrots, strong signals were obtained. In several soil samples more than one of the five Pythium species could be detected. The utilization of this diagnostic PCR assay in analysis of field soil and carrot tissue might in the future be exploited to reduce the incidence of this serious carrot disease. [ABSTRACT FROM AUTHOR]

When the biocontrol agent Pythium oligandrum (PO) colonizes the rhizosphere, it suppresses bacterial wilt disease in tomato ( Solanum lycopersicum cv. Micro-Tom) caused by Ralstonia solanacearum, and a homogenate of its mycelia exhibits elicitor activity, inducing an ethylene (ET)-dependent defence response in Micro-Tom. Since salicylic acid (SA) and jasmonic acid (JA) play an important role in plant defence responses to pathogens, the involvement of SA- and JA-dependent signal transduction pathways in resistance to R. solanacearum was investigated in tomato roots treated with a mycelial homogenate of PO. Bacterial wilt disease was also suppressed in tomato cv. Moneymaker treated with the PO homogenate. However, the SA-inducible PR-1( P6) gene was not up-regulated in either Micro-Tom or Moneymaker. SA did not accumulate in homogenate-treated roots in comparison with distilled water-treated controls, even 24 h after inoculation. Induced resistance against R. solanacearum was not compromised in SA-non-accumulating NahG transgenic plants treated with the PO homogenate. On the other hand, the expression of the JA-responsive gene for the basic PR-6 protein was induced in both tomato cultivars treated with the PO homogenate. Furthermore, quantitative disease assays showed that the induced resistance against R. solanacearum was compromized in PO homogenate-treated jai1-1 mutant plants defective in JA signalling. These results indicated that the JA-dependent signalling pathway is required for PO-induced resistance against R. solanacearum in tomato. [ABSTRACT FROM AUTHOR]

The relative importance of primary and secondary infections (auto- and alloinfections) in the development of a carrot cavity spot (CCS) epidemic caused by Pythium spp. were investigated. Three cropping factors: fungicide application, soil moisture and planting density, were selected as the key variables affecting the disease tetrahedron. Their effects on: (i) disease measurements at a specific time, (ii) the areas under the disease progress curves (AUDPCs) and (iii) a time-dependent parameter in a pathometric incidence-severity relationship, were studied. Mefenoxam applications 5 and 9 weeks after sowing reduced the intensity of a field CCS epidemic that involved both primary and secondary infections. In microcosm experiments, mefenoxam reduced secondary infections by Pythium violae obtained by transplanting infected carrot roots and slowed disease progress (1·6 lesions per root in treated versus 5·8 lesions in non-treated microcosms). A deficit of soil moisture limited the movement of Pythium propagules to host tissue, and thus reduced primary infections in the field; it also promoted the healing of lesions, limiting lesion expansion and the potential for alloinfections (6·8–7·5 lesions per root in irrigated plots compared with 2·4 lesions in non-irrigated plots). A negative relationship between the mean root-to-root distance and the rate of alloinfections was established in microcosms; a reduction in mean planting density was also effective in limiting CCS development (0·5, 1·6 and 2·0 lesions per root in microcosms containing 8, 16 and 31 roots, respectively). An integrated disease management system based on a combination of cultural methods, such as optimized fungicide application, date of harvest versus soil moisture content, and host density versus planting pattern, may make a useful contribute to the control of CCS. [ABSTRACT FROM AUTHOR]

Cavity spot of carrot (CCS), one of the most important soilborne diseases of this crop worldwide, is characterized by small sunken elliptical lesions on the taproot caused by a complex of pathogens belonging to the genus Pythium, notably P. violae. In most soilborne diseases the soil is the source of inoculum for primary infections, with diseased plants then providing inoculum for secondary infections (both auto- and alloinfection). Using fragments of CCS lesions to infest soil, it was demonstrated that CCS lesions on carrot residues can cause primary infection of healthy roots. Using a novel soil infestation method, in which an artificially infected carrot root (the donor plant) was placed close to healthy roots (receptor plants) the formation of typical CCS lesions were induced more efficiently than the use of classical soil inoculum and showed that CCS can spread from root to root by alloinfection from transplanted diseased roots. The method also demonstrated the polycyclic nature of a CCS epidemic caused by P. violae in controlled conditions. Secondary infections caused symptoms and reduced root weight as early as two weeks after transplantation of the diseased carrot. This reproducible method may be used for delayed inoculation and for studying the effect of cropping factors and the efficacy of treatments against primary and secondary cavity spot infections. [ABSTRACT FROM AUTHOR]

Cavity spot is a major disease of carrots, causing cavities on the surface of the root. Available commercial varieties show a range of susceptibility but no significant resistance. Seed progeny from 46 tissue culture-derived carrot ( Daucus carota) somaclones were screened for viability, then 19 selected somaclone families were sown under glasshouse conditions, along with commercial cultivars (Bertan, Nandor, Bolero and Vita Longa) as controls. Mature roots were exposed to Pythium violae in a cavity spot bioassay to determine their response as measured by disease incidence and severity. Some somaclones formed fewer lesions than the least susceptible control cultivar, Vita Longa. Seven somaclonal families that showed a range of susceptibility were sown under field conditions and the assessment was repeated. Although there was little relationship between glasshouse and field-trial results, under field conditions one of the somaclones had a mean incidence of disease, as estimated by transformed data, of 1·9 compared with 37·9 for the most susceptible somaclone and 3·5 for Bolero, the most resistant commercial cultivar. The results indicated that significant genetic variation in susceptibility to cavity spot disease was present in the somaclones. [ABSTRACT FROM AUTHOR]

Two immunodiagnostic detection assay procedures were compared with two conventional assays for their sensitivity in detecting propagules of Pythium ultimum var. sporangiiferum , Pythium Group F, Phytophthora cactorum and P. cryptogea in dilution series in sterile distilled water. The most sensitive assay for all four species was the zoospore trapping immunoassay (ZTI). Conventional membrane filtration-dilution plating gave similar results to ZTI with the two Phytophthora spp., but was less sensitive in Pythium detection. Immunodiagnostic dipstick assays and conventional bait tests showed similar sensitivities in the dilution series, and were generally about two orders of magnitude less sensitive than ZTI. The four techniques were also compared for their detection efficacy with water samples collected from horticultural nurseries and in in situ tests of infected root zones of Chamaecyparis , tomato and Chrysanthemum . In these comparisons, ZTI was again the most sensitive test for water samples, although membrane filtration-dilution plating proved to be a more consistent test. Dipstick and baiting assays were the best techniques for in situ testing, and dipsticks provided epidemiologically valuable, quantitative data on pathogen propagule numbers. [ABSTRACT FROM AUTHOR]

Metalaxyl was used to control Pythium diseases of carrots in experiments on farms with a history of cavity spot. The first experiment compared the method of application (sprayed, banded or broadcast) and rate (0, 1.5, 3 or 6 kg a.i. ha-1) one week after sowing. Three additional experiments compared the rate (0, 0.75, 1.5 or 3 kg a.i. ha-1) and time (sowing, 1- to 2- or 4- to 5-true-leaf stage) of application. In expt 1, the application of metalaxyl, but not the method by which it was applied, increased yield by 20% and significantly reduced the incidence of cavity spot, forking and misshapen carrots. In expts 2, 3 and 4, neither the rate nor time of application affected yield or reduced the incidence of Pythium diseases. Comparison of the sites showed that they differed in past metalaxyl usage. Metalaxyl had not been used on the site of expt 1, but had been used previously at sites 2, 3 and 4. Laboratory experiments were conducted to determine whether these differences in efficacy resulted from reduced sensitivity of Pythium isolates to metalaxyl, or reduced persistence of metalaxyl in soil. ED50 values showed that there was no reduction in metalaxyl sensitivity. The half-life of metalaxyl was 82 days in soil from expt 1, but was 10 days or fewer in soils from expts 2, 3 and 4. Thus the failure of metalaxyl to control Pythium diseases was associated with reduced persistence in soil, not reduced sensitivity of the target fungi. [ABSTRACT FROM AUTHOR]

Application of Pythium oligandrum to a soil-based compost as a mycelial suspension (5 × 102 CFU g-1 of dry compost) and oospore alginate pellets (105 oospores/g of dry compost) controlled pre- and postemergence damping-off of sugar beet caused by Pythium ultimum to a level similar to metalaxyl seed treatment. Oospore seed treatments and aqueous suspensions of oospores applied to compost failed to control disease. Problems in the use of P. oligandrum oospore inocula for the control of damping-off were highlighted. It was shown that treatment of oospores with cellulase (20 g L-1) increased germination approximately three-fold in comparison to untreated spores. Untreated and cellulase pretreated oospores were subsequently evaluated as seed treatments for their ability to control damping-off of sugar beet. The highest rate of pretreated oospores (104 oospores/seed) gave levels of emergence and establishment in infested compost that were not significantly different from the uninfested controls, whereas seed treatment with untreated oospores gave no significant reduction in disease. In a trial carried out in a controlled environment to assess the effect of pH (4.5–8.0), P. oligandrum (104 cellulase pretreated oospores/seed) was shown to control pre- and postemergence damping-off of sugar beet at pH 7.0 and 7.5 only. [ABSTRACT FROM AUTHOR]

Formulations of bacterial biocontrol agents were evaluated for the control of pea root-rot caused primarily by Pythium ultimum and Rhyzoctonia solani, at different levels of disease severity in field trials. Pseudomonas fluorescens (strain PRA25) in a peat-based formulation increased yield by 17% over the untreated, in a trial with light disease infection, and by 120% in another with moderate infection. Other bacteria including P. cepacia (strain AMMD) and fluorescent pseudomonads increased seedling emergence, and decreased disease incidence and severity, but with variable effects on yield when disease level was light to moderate. Biocontrol agents resulted in only limited control when disease was severe. Control with Captan did not differ significantly from that obtained with bacterial biocontrol agents. The application of Rhizobium granular inoculum together with PRA25 granules did not differ from other treatments in disease control, indicating that Rhizobium is compatible with biocontrol agents. The population dynamics of a fluorescent pseudomonad introduced into the rhizosphere in peat or granular formulation was monitored using an antibiotic-resistant mutant marker strain. The bacterium in peat formulation established a considerably higher population than that in granular formulation in 1993 trials, and a slightly higher population in 1994 trials. The higher population may have been responsible for the efficiency of root colonization and the effectiveness of disease control. [ABSTRACT FROM AUTHOR]

All 170 Pythium isolates from carrot cavity spot lesions from a field in Western Australia were found to belong to either P. coloratum or P. sulcatum. All isolates of P. coloratum produced large, brownish-black, water-soaked and depressed lesions on mature carrots inoculated with agar plugs colonized by the pathogen. In comparison, only a few isolates of P. sulcatum produced lesions and these were small. In glasshouse trials, P. coloratum produced substantial and numerous lesions at an inoculum density of 0.5% (weight of millet seed-based inoculum/weight of soil), whilst P. sulcatum produced few and small lesions at inoculum densities of 0.8 and 1 % and none at 0.5%. This is the first record of P. coloratum as a causal agent of cavity spot of carrots. [ABSTRACT FROM AUTHOR]

Soil from crop rotation experiments at three different sites was tested by using bait plants and a most probable number (MPN) method to estimate the inoculum potential of Pythium arrhenomanes in terms of the density of infective units. Recorded values varied between 0 and 85 infective units/kg soil. In soil from one of the sites the inoculum densities following barley monoculture were significantly higher than those from crop rotations, whether sampled in the spring or autumn. At the other two sites, which had consistently lower inoculum densities, small effects of rotation treatment were also recorded when they were sampled in the autumn. However, the results did not support the tentative conclusions of earlier studies, that inoculum of P. arrhenomanes could be a major cause of yield reduction in barley monoculture. The MPN method cannot be recommended for predicting expected disease levels of P. arrhenomanes, unless the infective unit can be carefully defined and its relation to yield loss reliably established. [ABSTRACT FROM AUTHOR]

Pythium species cause necrotic lesions and root rots on tomato in soilless culture. Epidemiological studies conducted in Brittany, France, revealed the precocity and the frequency of the contamination of tomato roots by these fungi, even in symptomless roots. The colonization, estimated by culture-plate methods, could reach levels as high as 105 propagules/gram of root. The frequent occurrence of Pythium with filamentous non-inflated sporangia, representing 75% of the total isolates, was observed during both latent infections and necrotic phases. Those Pythium spp., grouped as Pythium F, induced variable necrotic lesions in tomato roots in soilless culture. This group, which had been overlooked previously in favour of known pathogenic species such as P. ultimum var. ultimum, can be pathogenic to tomato plants and therefore form a component of a potential disease complex. [ABSTRACT FROM AUTHOR]

In a survey of fungi causing seedling diseases of sugar beet using a soil bioassay, Aphanomyces cochlioides and Pythium spp. were found to occur in 39% and 31%, respectively, of 341 sugar-beet fields selected in a stratified random sample in England. The frequency of A. cochlioides-infested soils varied widely in the different sugar-beet growing areas of the country. Soil pH was the single factor most strongly associated with the distribution of the pathogen, but regression models applied to combinations of factors indicated that soil texture and the interval between sugar-beet crops were also relevant to its frequency. It was detected less often in soils of high pH (&ges; 7-5), heavy texture and where the interval between sugar-beet crops exceeded 5 years. No significant associations were found between the proportion of soils with Pythium spp. and soil or cropping factors. [ABSTRACT FROM AUTHOR]

Isolates of Pythium attributable to thirteen named species and to species group F (sensu van der Plaats­Niterink) were isolated from roots of field-grown rice seedlings showing poor root development and lack of vigour. P. arrhenomanes and group F were the most commonly isolated species. The roots of 15-week-old rice plants yielded only P. flevoense, P. vanterpoolii, P. rostratum and Pythium group G of which the latter two were not obtained from seedling roots. In pot tests with representative Pythium isolates, P. arrhenomanes was most pathogenic to rice seedlings, causing pre- and post-emergence death and average reductions in shoot and root growth in surviving seedlings of 48 and 70%, respectively. P. irregulare killed seedlings before but not after emergence, whilst the response of rice seedlings to P. myriotylum apparently depended on the length and timing of a cold shock treatment. P. pyrilobum did not reduce seedling number or shoot growth but reduced root growth. P. vanterpoolii and group F were not pathogenic in the tests. P. coloratum, P. echinulatum, P. flevoense, P. oedochilum, P. oligandrum, P. periilum, P. pyrilobum and P. rostratum were isolated infrequently and had no adverse effects on seedlings in pathogenicity tests, although P. myriotylum, P. oligandrum, and P. periilum were associated with significant increases in shoot growth. P. tracheiphilum was isolated from one site but its pathogenicity was not tested, This is the first record of P. coloratura, P. echinulatum. P. flevoense, P. irregulare, P. oedochilum, P. oligandrum, P. periilum, P. pyrilobum and P. tracheiphilum from rice roots. [ABSTRACT FROM AUTHOR]

Mycelial extracts of Pythium irregulare were processed using CF-11 chromatography and analysed by gel electrophoresis for double-stranded RNA (dsRNA) content. DsRNA molecules of between 1 and 6 kb were found in 33 of 39 isolates tested. The dsRNA profiles of individual isolates remained unchanged after repeated subculturing of hyphal tips, after storage under water for 2 years, or when single zoospores were used to generate subcultures. However, dsRNA profiles varied between isolates, and even within individual populations; in the one case eight different dsRNA types were recovered upon testing 17 isolates from a single wheatfield. Isometric virus-like particles (VLPs) of approximately 45 nm were found in isolates containing dsRNA, while no such particles could be found in isolates in which dsRNA was not detected. Electrophoretic profiles of dsRNA extracted from partial purifications of VLPs were identical to those of dsRNA extracted from whole mycelium, suggesting that the dsRNA is at least partially encapsidated. Attempts to transmit dsRNA between isolates by hyphal anastomosis or by co- infection in wheat plants were unsuccessful, with only parental types being recovered. Analysis of 29 isolates representing 14 other Pythium species failed to detect dsRNA, even when co-isolated with F. irregulare known to contain dsRNA. [ABSTRACT FROM AUTHOR]

Five hundred and eight Pythium isolates were obtained from diseased sugar-beet seedlings in the field from beet field soils in Ireland. Pythium syllvaticum and P. intermedium were the dominant species, together representing 86% of isolates, and P. salpingophorum, P. ultimum, P. mamillatum, P. oligandrum and Pythium 'group HS' were the other species identified. The cultural characteristics of these species corresponded generally with previous descriptions, with the exception of P. sylvaticum and P. mainillatum, which varied in some respects. In glasshouse pathogenicity tests, P. sylvaticum, P. intermedium, P. salpingophorum, P. ultimum, P. mamillatum and one unidentified Pythium isolate caused pre-emergence and early post-emergence damping-off of sugar-beet seedlings. Isolates of P. oligandrum and Pythium 'group HS' were weakly pathogenic or not pathogenic to beet seedlings. [ABSTRACT FROM AUTHOR]

Pythium heterothallicum, P irregulare, P. torulosum and P. ultimum var. sporangiiferum were compared for pathogenicity to seedlings of winter wheat, spring barley, lentils and peas in growth chambers at 5, 10, 15, 20 and 25 C. These four fungi are among the most commonly isolated Pythium species from wheat roots and wheat-field soils in eastern Washington and northern Idaho, USA, where wheat, spring barley, lentils and peas are grown in various rotations. Pathogenicity was determined in artificially infested soils (500 propagules per g) based on ability to cause pre-emergence death and post-emergence stunting of seedlings. P. ultimum var. sporangiiferum caused significant pre-emergence death only of peas and only at 5 C. With the possible exception of lentils at 25 C, P. heterothallicum and P. torulosum caused no pre-emergence death of any of the four plant species. None of the species caused pre-emergence death of spring barley. P. ultimum var. sporangiiferum caused the most post-emergence stunting of wheat, peas and lentils at 10 C and above. Pythium irregulare caused as much or more stunting than P. ultimum var. sporangiiferum on wheat, lentils and peas at 5 C, and was the most pathogenic species on barley at 10, 20 and 25 C. P. irregulare caused significantly more post-emergence stunting of wheat at 5 C with than without chaff (added as a food base for the pathogen); this was not offset by adding ammonium sulphate with the chaff. [ABSTRACT FROM AUTHOR]

Antiserum (anti-PfM) raised against mycelial suspensions of Phytophthora fragariae isolates reacted strongly with antigens from several Phytophthora species. Some cross-reactions with antigens from Pythium species were decreased by fractionating on an affinity column of Sepharose 4B bound to extracts of Fragaria vesca roots infected with P. frageriae. The affinity-purified anti-PfM retained its high cross-reactivity with the various Phytophthora species tested. It also detected infection of raspberry and strawberry roots by some Phytophthora species. This antiserum could, therefore, prove useful as a broad-spectrum Phytophthora-detecting antiserum. Anti-PfM could not be made specific for P.fragariae because it was raised against components shown to be antigenically similar in all Phytophthora species tested. However, immunoblotting with the affinity-purified anti-PfM produced distinct patterns for P. fragariae, P. erythroseptica and P. cactorum: three serotypes were identified for the latter species. This antiserum might therefore prove useful in classifying Phytophthora species. [ABSTRACT FROM AUTHOR]

Pythium oligandrum oospores, incorporated in clay carrier, survived a commercial seed-pelleting process to give protection against damping-off in sugar beet and cress induced by Pythium ultimum, together with damping-off in carrot caused by Mycocentrospora acerina. It is suggested that field scale evaluation of P. oligandrum as a biocontrol of fungally incited seedling diseases is now both feasible and desirable. [ABSTRACT FROM AUTHOR]

Pythium oligandrum was consistently isolated from black patches of mushroom compost from two farms. When used in experiments it inhibited the growth of mycelium of Agaricus bisporus and this effect was enhanced in the presence of a compost supplement which contained high level of nitrogen. The common name pythium-black compost is proposed for the problem. [ABSTRACT FROM AUTHOR]