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Your search keyword '"Sequence Analysis"' showing total 936 results

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936 results on '"Sequence Analysis"'

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1. TPMA: A two pointers meta-alignment tool to ensemble different multiple nucleic acid sequence alignments.

2. Bidirectional de novo peptide sequencing using a transformer model.

3. Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data.

4. BioSeq-Diabolo: Biological sequence similarity analysis using Diabolo.

5. A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis.

6. CHOmics: A web-based tool for multi-omics data analysis and interactive visualization in CHO cell lines

7. Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli.

8. Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.

9. Efficient algorithms to discover alterations with complementary functional association in cancer.

10. Efficient algorithms to discover alterations with complementary functional association in cancer

11. Analyzing the symmetrical arrangement of structural repeats in proteins with CE-Symm

12. clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets.

13. Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection.

14. Design of immunogens for eliciting antibody responses that may protect against SARS-CoV-2 variants.

15. Quantification of transplant-derived circulating cell-free DNA in absence of a donor genotype.

16. An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.

17. A Statistical Framework to Identify Deviation from Time Linearity in Epigenetic Aging.

18. Constructing benchmark test sets for biological sequence analysis using independent set algorithms.

19. rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison.

20. CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing.

21. 4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments.

22. Transcriptome sequencing reveals potential mechanism of cryptic 3' splice site selection in SF3B1-mutated cancers.

23. Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trial.

24. A probabilistic model to predict clinical phenotypic traits from genome sequencing.

25. Combinatorial pooling enables selective sequencing of the barley gene space.

26. The roots of bioinformatics in protein evolution.

27. Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function.

28. A primer on metagenomics.

29. Discovering functional sequences with RELICS, an analysis method for CRISPR screens.

30. A crowdsourced set of curated structural variants for the human genome.

31. Inferring the immune response from repertoire sequencing.

32. ASAP-SML: An antibody sequence analysis pipeline using statistical testing and machine learning.

33. Comprehensive analysis of structural and sequencing data reveals almost unconstrained chain pairing in TCRαβ complex.

34. SuperFreq: Integrated mutation detection and clonal tracking in cancer.

35. The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.

36. ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest.

37. A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family.

38. Using network component analysis to dissect regulatory networks mediated by transcription factors in yeast.

39. A semi-supervised method for predicting transcription factor-gene interactions in Escherichia coli.

40. Stereochemical criteria for prediction of the effects of proline mutations on protein stability.

41. Design of multi-specificity in protein interfaces.

42. Ultra-fast evaluation of protein energies directly from sequence.

43. Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression.

44. A scale-free analysis of the HIV-1 genome demonstrates multiple conserved regions of structural and functional importance.

45. Predicting gene expression in the human malaria parasite Plasmodium falciparum using histone modification, nucleosome positioning, and 3D localization features.

46. Bioinformatics in Jordan: Status, challenges, and future directions.

47. Generation of Binary Tree-Child phylogenetic networks.

48. Learning the structure of the world: The adaptive nature of state-space and action representations in multi-stage decision-making.

49. Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction.

50. A lipophilicity-based energy function for membrane-protein modelling and design.

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