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With the development of society and changes in the human living environment, people are increasingly attaching importance to their own health. Regarding medical imaging examinations of certain parts of the body, the process of medical image segmentation has become extremely important. This paper presents a novel hybrid algorithm: SAOBL-IA, a fusion of the Simulated Annealing(SA), Opposition-based Learning(OBL)and Island Algorithm(IA). The Island Algorithm itself suffers from slow convergence speed and the tendency to get stuck in local optimum. To address these limitations, we introduce opposition-based learning to enhance the search range and avoid local optimum. Furthermore, we leverage the simulated annealing approach to accelerate the convergence of SAOBL-IA. Comparing the experimental results, it can be seen that SAOBL-IA has better comprehensive performance. Subsequently, the SAOBL-IA algorithm is utilized in conjunction with an optimized two-dimensional OTSU fusion segmentation technique for the purpose of medical image processing. This study proposes an application of image segmentation based on the SAOBL-IA. The segmentation of pixels around the background and target regions using the two-dimensional OTSU method faces challenges in terms of accuracy. To address this issue, an adaptive thresholding technique known as Adaptive Forking is employed for optimization. By determining the slope of the fork based on the misclassified pixel ratio, enhanced segmentation accuracy can be achieved. This improved approach is then integrated with the SAOBL-IA algorithm and applied to the segmentation of lung medical images. The experimental findings show that the amalgamation of SAOBL-IA with the adaptive two-dimensional OTSU segmentation approach, as proposed in this study, manifests superior segmentation speed and enhanced precision in the context of medical image segmentation. [ABSTRACT FROM AUTHOR]

The bin packing problem has a wide range of applications in industry. With the upgrade of the task difficulty, the traditional 2d rectangular layout algorithm can no longer meet the needs of modern industry, such as express packing task and exoplanet ore collection task. The express or ore samples come in heterogeneous shapes so they cannot all be treated as rectangular pieces. In this paper, we propose a three-stage method called covering, corner-searching and occupying (C,S&O) to solve the two-dimensional multishape part packing problem. The objective of the packing problem variant is to ensure maximum use of the raw material and minimize the trim loss. The algorithm cannot make use of information about the sequence of future objects that are going to arrive, only knowing the shape and size of the coming one, and the coming part must be packed into the bin immediately after its arrival without buffering or readjusting. The method of C,S&O hybridizes the idea of "gold corners, silver edges and grass belly" in the Chinese game Go and the method of finding picture corners in machine vision. In the first stage, the rectangular bin and the coming part are transformed into matrix representation, and generating the position matrix that indicates possible ways of packing the part into the bin. In the second stage, the suitable layout position of the coming part is obtained using machine vision image processing technology for reference. The third stage is calculating the environment matching degree to determine the current optimal placement orientation. In order to facilitate the display of the simulation results, only three shapes of parts are considered in the simulation, rectangle, circle and triangle. The experimental results show the effectiveness of this method. Consulting the literature, it is found that this paper is the first to propose a layout method for multishape manufacturing parts. [ABSTRACT FROM AUTHOR]

In this study, we employed the principle of Relative Mode Transfer Method (RMTM) to establish a model for a single pendulum subjected to sudden changes in its length. An experimental platform for image processing was constructed to accurately track the position of a moving ball, enabling experimental verification of the pendulum's motion under specific operating conditions. The experimental data demonstrated excellent agreement with simulated numerical results, validating the effectiveness of the proposed methodology. Furthermore, we performed simulations of a double obstacle pendulum system, investigating the effects of different parameters, including obstacle pin positions, quantities, and initial release angles, on the pendulum's motion through numerical simulations. This research provides novel insights into addressing the challenges associated with abrupt and continuous changes in pendulum length. [ABSTRACT FROM AUTHOR]

In the realm of digital image applications, image processing technology occupies a pivotal position, with image segmentation serving as a foundational component. As the digital image application domain expands across industries, the conventional segmentation techniques increasingly challenge to cater to modern demands. To address this gap, this paper introduces an MCMC-based image segmentation algorithm based on the Markov Random Field (MRF) model, marking a significant stride in the field. The novelty of this research lies in its method that capitalizes on domain information in pixel space, amplifying the local segmentation precision of image segmentation algorithms. Further innovation is manifested in the development of an adaptive segmentation image denoising algorithm based on MCMC sampling. This algorithm not only elevates image segmentation outcomes, but also proficiently denoises the image. In the experimental results, MRF-MCMC achieves better segmentation performance, with an average segmentation accuracy of 94.26% in Lena images, significantly superior to other common image segmentation algorithms. In addition, the study proposes that the denoising model outperforms other algorithms in peak signal-to-noise ratio and structural similarity in environments with noise standard deviations of 15, 25, and 50. In essence, these experimental findings affirm the efficacy of this study, opening avenues for refining digital image segmentation methodologies. [ABSTRACT FROM AUTHOR]

In view of the special engineering properties of red clay and the waste of phosphogypsum resources, the expansion and contraction deformation and fissure evolution of phosphogypsum stabilized red clay under different conditions were investigated by laboratory tests and image processing system. The research results show that: (1) the absolute expansion and absolute shrinkage of phosphogypsum stabilized red clay are positively correlated with the compaction degree, the number of dry and wet cycles and the cement dosage, and negatively correlated with the initial water content and the phosphogypsum dosage; (2) the fissure rate increases with the increase of the number of dry and wet cycles, and decreases with the increase of the initial water content, the compaction degree, the cement, and the phosphogypsum dosage; (3) The relationship among absolute expansion rate (absolute shrinkage), degree of compaction and fracture rate can be fitted by the equation f(x,y) = ax+by+cx2+dy2+e; (4) Phosphogypsum has an obvious inhibiting effect on the expansion, shrinkage and cracking of the mix. It is recommended that the cement mixing amount of 6% and phosphogypsum: red clay = 1:1~1:2 as roadbed filler. [ABSTRACT FROM AUTHOR]

With the exploration and development of marine resources, deep learning is more and more widely used in underwater image processing. However, the quality of the original underwater images is so low that traditional semantic segmentation methods obtain poor segmentation results, such as blurred target edges, insufficient segmentation accuracy, and poor regional boundary segmentation effects. To solve these problems, this paper proposes a semantic segmentation method for underwater images. Firstly, the image enhancement based on multi-spatial transformation is performed to improve the quality of the original images, which is not common in other advanced semantic segmentation methods. Then, the densely connected hybrid atrous convolution effectively expands the receptive field and slows down the speed of resolution reduction. Next, the cascaded atrous convolutional spatial pyramid pooling module integrates boundary features of different scales to enrich target details. Finally, the context information aggregation decoder fuses the features of the shallow network and the deep network to extract rich contextual information, which greatly reduces information loss. The proposed method was evaluated on RUIE, HabCam UID, and UIEBD. Compared with the state-of-the-art semantic segmentation algorithms, the proposed method has advantages in segmentation integrity, location accuracy, boundary clarity, and detail in subjective perception. On the objective data, the proposed method achieves the highest MIOU of 68.3 and OA of 79.4, and it has a low resource consumption. Besides, the ablation experiment also verifies the effectiveness of our method. [ABSTRACT FROM AUTHOR]

A fault detection method using skeleton extraction based on orientation field consistency is proposed to improve the efficiency of fault detection, reduce the influence of transverse nonstructural factors on fault detection, and realize automatic fault extraction. In fingerprint image processing, the consistency of the orientation field reaches a maximum value when all orientations are parallel and takes a smaller value when not all orientations are parallel. The orientation field ceases to be parallel in the presence of a stratigraphic discontinuity, and the consistency of the orientation field in the corresponding region is lower than that in parallel regions. This characteristic can be exploited to extract discontinuous regions from seismic data. Then, binarization and closing operations are used to extract fault areas and increase fault continuity. Finally, a skeleton extraction method based on extracting the longitudinal center point is used to identify the fault lines. Compared with the classical ant tracking method, the proposed method requires the adjustment of fewer parameters, thus simplifying fault identification process to a certain extent. Moreover, the proposed method effectively suppresses transverse discontinuities, highlights the longitudinal fault characteristics, and strengthens fault continuity. [ABSTRACT FROM AUTHOR]

The distortion measurement plays an important role in panoramic image processing. Most measurement algorithms judge the panoramic image quality by means of weighting the quality of the local areas. However, such a calculation fails to globally reflect the quality of the panoramic image. Therefore, the multi-region adjacent pixels correlation (MRAPC) is proposed as the efficient feature for no-reference panoramic images quality assessment in this paper. Specifically, from the perspective of the statistical characteristics, the differences of the adjacent pixels in panoramic image are proved to be highly related to the degree of distortion and independent of image content. Besides, the difference map has limited pixel value range, which can improve the efficiency of quality assessment. Based on these advantages, the proposed MRAPC feature collaborates with the support vector regression to globally predict the quality of panoramic images. Extensive experimental results show that the proposed no-reference panoramic image quality assessment algorithm achieves higher evaluation performance than the existing algorithms. [ABSTRACT FROM AUTHOR]

Aerial photography is a long-range, non-contact method of target detection technology that enables qualitative or quantitative analysis of the target. However, aerial photography images generally have certain chromatic aberration and color distortion. Therefore, effective segmentation of aerial images can further enhance the feature information and reduce the computational difficulty for subsequent image processing. In this paper, we propose an improved version of Golden Jackal Optimization, which is dubbed Helper Mechanism Based Golden Jackal Optimization (HGJO), to apply multilevel threshold segmentation to aerial images. The proposed method uses opposition-based learning to boost population diversity. And a new approach to calculate the prey escape energy is proposed to improve the convergence speed of the algorithm. In addition, the Cauchy distribution is introduced to adjust the original update scheme to enhance the exploration capability of the algorithm. Finally, a novel "helper mechanism" is designed to improve the performance for escape the local optima. To demonstrate the effectiveness of the proposed algorithm, we use the CEC2022 benchmark function test suite to perform comparison experiments. the HGJO is compared with the original GJO and five classical meta-heuristics. The experimental results show that HGJO is able to achieve competitive results in the benchmark test set. Finally, all of the algorithms are applied to the experiments of variable threshold segmentation of aerial images, and the results show that the aerial photography images segmented by HGJO beat the others. Noteworthy, the source code of HGJO is publicly available at https://github.com/Vang-z/HGJO. [ABSTRACT FROM AUTHOR]

Research on underwater image processing has increased significantly in the past decade due to the precious resources that exist underwater. However, it is still a challenging problem to restore degraded underwater images. Existing prior-based methods show limited performance in many cases due to their reliance on hand-crafted features. Therefore, in this paper, we propose an effective unsupervised generative adversarial network(GAN) for underwater image restoration. Specifically, we embed the idea of contrastive learning into the model. The method encourages two elements (corresponding patches) to map the similar points in the learned feature space relative to other elements (other patches) in the data set, and maximizes the mutual information between input and output through PatchNCE loss. We design a query attention (Que-Attn) module, which compares feature distances in the source domain, and gives an attention matrix and probability distribution for each row. We then select queries based on their importance measure calculated from the distribution. We also verify its generalization performance on several benchmark datasets. Experiments and comparison with the state-of-the-art methods show that our model outperforms others. [ABSTRACT FROM AUTHOR]

This paper details the development and testing of the GIFT macro, which is a freely available program for ImageJ for the automated measurement of fiber diameters in SEM images of electrospun materials. The GIFT macro applies a validated method which distinguishes fiber diameters based on distance frequencies within an image. In this work, we introduce an applied version of the GIFT method which has been designed to be user-friendly while still allowing complete control over the various parameters involved in the image processing steps. The macro quickly processes large data sets and creates results that are reproducible and accurate. The program outputs both raw data and fiber diameter averages, so that the user can quickly assess the results and has the opportunity for further analysis if desired. The GIFT macro was compared directly to other software designed for fiber diameter measurements and was found to have comparable or lower average error, especially when measuring very small fibers, and reduced processing times per image. The macro, detailed instructions for use, and sample images are freely available online (https://github.com/IBMTRostock/GIFT). We believe that the GIFT macro is a valuable new tool for researchers looking to quickly, easily and reliably assess fiber diameters in electrospun materials. [ABSTRACT FROM AUTHOR]

Cerebrovascular Reactivity (CVR) provides an assessment of the brain's vascular reserve and has been postulated to be a sensitive marker in cerebrovascular diseases. MRI-based CVR measurement typically employs alterations in arterial carbon dioxide (CO2) level while continuously acquiring Blood-Oxygenation-Level-Dependent (BOLD) images. CO2-inhalation and resting-state methods are two commonly used approaches for CVR MRI. However, processing of CVR MRI data often requires special expertise and may become an obstacle in broad utilization of this promising technique. The aim of this work was to develop CVR-MRICloud, a cloud-based CVR processing pipeline, to enable automated processing of CVR MRI data. The CVR-MRICloud consists of several major steps including extraction of end-tidal CO2 (EtCO2) curve from raw CO2 recording, alignment of EtCO2 curve with BOLD time course, computation of CVR value on a whole-brain, regional, and voxel-wise basis. The pipeline also includes standard BOLD image processing steps such as motion correction, registration between functional and anatomic images, and transformation of the CVR images to canonical space. This paper describes these algorithms and demonstrates the performance of the CVR-MRICloud in lifespan healthy subjects and patients with clinical conditions such as stroke, brain tumor, and Moyamoya disease. CVR-MRICloud has potential to be used as a data processing tool for a variety of basic science and clinical applications. [ABSTRACT FROM AUTHOR]

A quality detection system for the "Red Fuji" apple in Luochuan was designed for automatic grading. According to the Chinese national standard, the grading principles of apple appearance quality and Brix detection were determined. Based on machine vision and image processing, the classifier models of apple defect, contour, and size were constructed. And then, the grading thresholds were set to detect the defective pixel ratio t, aspect ratio λ, and the cross-sectional diameter Wp in the image of the apple. Spectral information of apples in the wavelength range of 400 nm~1000 nm was collected and the multiple scattering correction (MSC) and standard normal variable (SNV) transformation methods were used to preprocess spectral reflectance data. The competitive adaptive reweighted sampling (CARS) algorithm and the successive projections algorithm (SPA) were used to extract characteristic wavelength points containing Brix information, and the CARS-PLS (partial least squares) algorithm was used to establish a Brix prediction model. Apple defect, contour, size, and Brix were combined as grading indicators. The apple quality online grading detection platform was built, and apple's comprehensive grading detection algorithm and upper computer software were designed. The experiments showed that the average accuracy of apple defect, contour, and size grading detection was 96.67%, 95.00%, and 94.67% respectively, and the correlation coefficient Rp of the Brix prediction set was 0.9469. The total accuracy of apple defect, contour, size, and Brix grading was 96.67%, indicating that the detection system designed in this paper is feasible to classify "Red Fuji" apple in Luochuan. [ABSTRACT FROM AUTHOR]

In the context of intelligent driving, pedestrian detection faces challenges related to low accuracy in target recognition and positioning. To address this issue, a pedestrian detection algorithm is proposed that integrates a large kernel attention mechanism with the YOLOV5 lightweight model. The algorithm aims to enhance long-term attention and dependence during image processing by fusing the large kernel attention module with the C3 module. Furthermore, it addresses the lack of long-distance relationship information in channel and spatial feature extraction and representation by introducing the Coordinate Attention mechanism. This mechanism effectively extracts local information and focused location details, thereby improving detection accuracy. To improve the positioning accuracy of obscured targets, the alpha CIOU bounding box regression loss function is employed. It helps mitigate the impact of occlusions and enhances the algorithm's ability to precisely localize pedestrians. To evaluate the effectiveness of trained model, experiments are conducted on the BDD100K pedestrian dataset as well as the Pascal VOC dataset. Experimental results demonstrate that the improved attention fusion YOLOV5 lightweight model achieves an average accuracy of 60.3%. Specifically, the detection accuracy improves by 1.1% compared to the original YOLOV5 algorithm, and the accuracy performance index reaches 73.0%. These findings strongly indicate the proposed algorithm in significantly enhancing the accuracy of pedestrian detection in road scenes. [ABSTRACT FROM AUTHOR]

The Euler's elastica energy regularizer has been widely used in image processing and computer vision tasks. However, finding a fast and simple solver for the term remains challenging. In this paper, we propose a new dual method to simplify the solution. Classical fast solutions transform the complex optimization problem into simpler subproblems, but introduce many parameters and split operators in the process. Hence, we propose a new dual algorithm to maintain the constraint exactly, while using only one dual parameter to transform the problem into its alternate optimization form. The proposed dual method can be easily applied to level-set-based segmentation models that contain the Euler's elastic term. Lastly, we demonstrate the performance of the proposed method on both synthetic and real images in tasks image processing tasks, i.e. denoising, inpainting, and segmentation, as well as compare to the Augmented Lagrangian method (ALM) on the aforementioned tasks. [ABSTRACT FROM AUTHOR]

The classification of vehicles presents notable challenges within the domain of image processing. Traditional models suffer from inefficiency, prolonged training times for datasets, intricate feature extraction, and variable assignment complexities for classification. Conventional methods applied to categorize vehicles from extensive datasets often lead to errors, misclassifications, and unproductive outcomes. Consequently, leveraging machine learning techniques emerges as a promising solution to tackle these challenges. This study adopts a machine learning approach to alleviate image misclassifications and manage large quantities of vehicle images effectively. Specifically, a contrast enhancement technique is employed in the pre-processing stage to highlight pixel values in vehicle images. In the feature segmentation stage, Mask-R-CNN is utilized to categorize pixels into predefined classes. VGG16 is then employed to extract features from vehicle images, while an autoencoder aids in selecting features by learning non-linear input features and compressing representation features. Finally, the CatBoost (CB) algorithm is implemented for vehicle classification (VC) in diverse critical environments, such as inclement weather, twilight, and instances of vehicle blockage. Extensive experiments are conducted using different large-scale datasets with various machine learning platforms. The findings indicate that CB (presumably a specific method or algorithm) attains the highest level of performance on the large-scale dataset named UFPR-ALPR, with an accuracy rate of 98.89%. [ABSTRACT FROM AUTHOR]

To facilitate the characterization of unlabeled induced pluripotent stem cells (iPSCs) during culture and expansion, we developed an AI pipeline for nuclear segmentation and mitosis detection from phase contrast images of individual cells within iPSC colonies. The analysis uses a 2D convolutional neural network (U-Net) plus a 3D U-Net applied on time lapse images to detect and segment nuclei, mitotic events, and daughter nuclei to enable tracking of large numbers of individual cells over long times in culture. The analysis uses fluorescence data to train models for segmenting nuclei in phase contrast images. The use of classical image processing routines to segment fluorescent nuclei precludes the need for manual annotation. We optimize and evaluate the accuracy of automated annotation to assure the reliability of the training. The model is generalizable in that it performs well on different datasets with an average F1 score of 0.94, on cells at different densities, and on cells from different pluripotent cell lines. The method allows us to assess, in a non-invasive manner, rates of mitosis and cell division which serve as indicators of cell state and cell health. We assess these parameters in up to hundreds of thousands of cells in culture for more than 36 hours, at different locations in the colonies, and as a function of excitation light exposure. [ABSTRACT FROM AUTHOR]

The integration of artificial intelligence (AI) in diagnosing diabetic retinopathy, a major contributor to global vision impairment, is becoming increasingly pronounced. Notably, the detection of vision-threatening diabetic retinopathy (VTDR) has been significantly fortified through automated techniques. Traditionally, the reliance on manual analysis of retinal images, albeit slow and error-prone, constituted the conventional approach. Addressing this, our study introduces a novel methodology that amplifies the robustness and precision of the detection process. This is complemented by the groundbreaking Hierarchical Block Attention (HBA) and HBA-U-Net architecture, which notably propel attention mechanisms in image segmentation. This innovative model refines image processing without imposing excessive computational demands by honing in on individual pixel intricacies, spatial relationships, and channel-specific attention. Building upon this innovation, our proposed method employs a multi-stage strategy encompassing data pre-processing, feature extraction via a hybrid CNN-SVD model, and classification employing an amalgamation of Improved Support Vector Machine-Radial Basis Function (ISVM-RBF), DT, and KNN techniques. Rigorously tested on the IDRiD dataset classified into five severity tiers, the hybrid model yields remarkable performance, achieving a 99.18% accuracy, 98.15% sensitivity, and 100% specificity in VTDR detection, thus surpassing existing methods. These results underscore a more potent avenue for diagnosing and addressing this crucial ocular condition while underscoring AI's transformative potential in medical care, particularly in ophthalmology. [ABSTRACT FROM AUTHOR]

In the context of Industry 4.0, manufacturing metrology is crucial for inspecting and measuring machines. The Internet of Things (IoT) technology enables seamless communication between advanced industrial devices through local and cloud computing servers. This study investigates the use of the MQTT protocol to enhance the performance of circularity measurement data transmission between cloud servers and round-hole data sources through Open CV. Accurate inspection of circular characteristics, particularly roundness errors, is vital for lubricant distribution, assemblies, and rotational force innovation. Circularity measurement techniques employ algorithms like the minimal zone circle tolerance algorithm. Vision inspection systems, utilizing image processing techniques, can promptly and accurately detect quality concerns by analyzing the model's surface through circular dimension analysis. This involves sending the model's image to a computer, which employs techniques such as Hough Transform, Edge Detection, and Contour Analysis to identify circular features and extract relevant parameters. This method is utilized in the camera industry and component assembly. To assess the performance, a comparative experiment was conducted between the non-contact-based 3SMVI system and the contact-based CMM system widely used in various industries for roundness evaluation. The CMM technique is known for its high precision but is time-consuming. Experimental results indicated a variation of 5 to 9.6 micrometers between the two methods. It is suggested that using a high-resolution camera and appropriate lighting conditions can further enhance result precision. [ABSTRACT FROM AUTHOR]

In the latest research progress, deep neural networks have been revolutionized by frameworks to extract image features more accurately. In this study, we focus on an attention model that can be useful in deep neural networks and propose a simple but strong feature extraction deep network architecture, W-Net. The architecture of our W-Net network has two mutually independent path structures, and it is designed with the following advantages. (1) There are two independent effective paths in our proposed network structure, and the two paths capture more contextual information from different scales in different ways. (2) The two paths acquire different feature images, and in the upsampling approach, we use bilinear interpolation thus reducing the feature map distortion phenomenon and integrating the different images processed. (3) The feature image processing is at a bottleneck, and a hierarchical attention module is constructed at the bottleneck by reclassifying after the channel attention module and the spatial attention module, resulting in more efficient and accurate processing of feature images. During the experiment, we also tested iSAID, a massively high spatial resolution remote sensing image dataset, with further experimental data comparison to demonstrate the generality of our method for remote sensor image segmentation. [ABSTRACT FROM AUTHOR]

Eye diseases such as diabetic retinopathy are progressive with various changes in the retinal vessels, and it is difficult to analyze the disease for future treatment. There are many computerized algorithms implemented for retinal vessel segmentation, but the tiny vessels drop off, impacting the performance of the overall algorithms. This research work contains the new image processing techniques such as enhancement filters, coherence filters and binary thresholding techniques to handle the different color retinal fundus image problems to achieve a vessel image that is well-segmented, and the proposed algorithm has improved performance over existing work. Our developed technique incorporates morphological techniques to address the center light reflex issue. Additionally, to effectively resolve the problem of insufficient and varying contrast, our developed technique employs homomorphic methods and Wiener filtering. Coherent filters are used to address the coherence issue of the retina vessels, and then a double thresholding technique is applied with image reconstruction to achieve a correctly segmented vessel image. The results of our developed technique were evaluated using the STARE and DRIVE datasets and it achieves an accuracy of about 0.96 and a sensitivity of 0.81. The performance obtained from our proposed method proved the capability of the method which can be used by ophthalmology experts to diagnose ocular abnormalities and recommended for further treatment. [ABSTRACT FROM AUTHOR]

This work addresses the declining physical fitness levels observed in both football players and the general population. The objective is to investigate the impact of functional strength training on the physical capabilities of football players and to develop a machine learning-based approach for posture recognition. A total of 116 adolescents aged 8 to 13 participating in football training are randomly assigned to either an experimental group (n = 60) or a control group (n = 56). Both groups underwent 24 training sessions, with the experimental group engaging in 15–20 minutes of functional strength training after each session. Machine learning techniques, specifically the backpropagation neural network (BPNN) in deep learning, are utilized to analyze the kicking actions of football players. Movement speed, sensitivity, and strength are employed as input vectors for the BPNN to compare the images of players' movements, while the similarity between the kicking actions and standard movements served as the output result to enhance training efficiency. The experimental group's kicking scores are compared to their pre-experiment scores, demonstrating a statistically significant improvement. Moreover, statistically significant differences are observed in the 5*25m shuttle running, throwing, and set kicking between the control and experimental groups. These findings highlight the significant enhancement in strength and sensitivity achieved through functional strength training in football players. The results contribute to the development of training programs for football players and the overall improvement of training efficiency. [ABSTRACT FROM AUTHOR]

Myopic Choroidal neovascularization (mCNV) is one of the most common vision-threatening com- plications of pathological myopia among many retinal diseases. Optical Coherence Tomography Angiography (OCTA) is an emerging newer non-invasive imaging technique and is recently being included in the investigation and treatment of mCNV. However, there exists no standard tool for time-efficient and dependable analysis of OCTA images of mCNV. In this study, we propose a customizable ImageJ macro that automates the OCTA image processing and lets users measure nine mCNV biomarkers. We developed a three-stage image processing pipeline to process the OCTA images using the macro. The images were first manually delineated, and then denoised using a Gaussian Filter. This was followed by the application of the Frangi filter and Local Adaptive thresholding. Finally, skeletonized images were obtained using the Mexican Hat filter. Nine vascular biomarkers including Junction Density, Vessel Diameter, and Fractal Dimension were then computed from the skeletonized images. The macro was tested on a 26 OCTA image dataset for all biomarkers. Two trends emerged in the computed biomarker values. First, the lesion-size dependent parameters (mCNV Area (mm2) Mean = 0.65, SD = 0.46) showed high variation, whereas normalized parameters (Junction Density(n/mm): Mean = 10.24, SD = 0.63) were uniform throughout the dataset. The computed values were consistent with manual measurements within existing literature. The results illustrate our ImageJ macro to be a convenient alternative for manual OCTA image processing, including provisions for batch processing and parameter customization, providing a systematic, reliable analysis of mCNV. [ABSTRACT FROM AUTHOR]

More than 50% of the images captured by optical satellites are covered by clouds, which reduces the available information in the images and seriously affects the subsequent applications of satellite images. Therefore, the identification and segmentation of cloud regions come to be one of the most important problems in current satellite image processing. Due to the complexity and variability of satellite images, especially when the ground is covered with snow, the boundary information of cloud regions is difficult to be accurately identified. The fast and accurate segmentation of cloud regions is a difficult point in the current research. We propose a lightweight convolutional neural network. Firstly, channel attention is used to optimize the effective information in the feature maps as a way to improve the network's ability to extract semantic information at each scale. Then, we fuse high and low-dimensional feature maps to enhance the network's ability to obtain small-scale semantic information. In addition, the feature aggregation module automatically adjusts the input multi-level feature weights to highlight the details of different features. Finally, we design the fully connected conditional random field to solve the problem that some noise in the input image and local minima during training is passed to the output layer resulting in the loss of edge features. Experimental results show that the proposed method achieves 0.9695 and 0.8218 for overall accuracy and recall, respectively, which has higher segmentation accuracy with the shortest time consumption compared with other state-of-the-art methods. [ABSTRACT FROM AUTHOR]

Quantitative bovine gait analysis using technology has evolved significantly over the last two decades. However, subjective methods of gait assessment using visual locomotion scoring remain the primary on-farm and experimental approach. The objective of this review is to map research trends in quantitative bovine gait analysis and to explore the technologies that have been utilized to measure biomechanical parameters of gait. A scoping literature review was conducted according to PRISMA guidelines. A search algorithm based on PICO framework generated three components–bovine, gait, and technology–to address our objectives. Three online databases were searched for original work published from January 2000 to June 2020. A two-step screening process was then conducted, starting with the review of article titles and abstracts based on inclusion criteria. A remaining 125 articles then underwent a full-text assessment, resulting in 82 final articles. Thematic analysis of research aims resulted in four major themes among the studies: gait/claw biomechanics, lameness detection, intervention/comparison, and system development. Of the 4 themes, lameness detection (55% of studies) was the most common reason for technology use. Within the literature identified three main technologies were used: force and pressure platforms (FPP), vision-based systems (VB), and accelerometers. FPP were the first and most popular technologies to evaluate bovine gait and were used in 58.5% of studies. They include force platforms, pressure mapping systems, and weight distribution platforms. The second most applied technology was VB (34.1% of studies), which predominately consists of video analysis and image processing systems. Accelerometers, another technological method to measure gait characteristics, were used in 14.6% of studies. In sum, the strong demand for automatic lameness detection influenced the path of development for quantitative gait analysis technologies. Among emergent technologies, deep learning and wearable sensors (e.g., accelerometers) appear to be the most promising options. However, although progress has been made, more research is needed to develop more accurate, practical, and user-friendly technologies. [ABSTRACT FROM AUTHOR]

Despite current advancement in the field of biomedical image processing, propelled by the deep learning revolution, multimodal image registration, due to its several challenges, is still often performed manually by specialists. The recent success of image-to-image (I2I) translation in computer vision applications and its growing use in biomedical areas provide a tempting possibility of transforming the multimodal registration problem into a, potentially easier, monomodal one. We conduct an empirical study of the applicability of modern I2I translation methods for the task of rigid registration of multimodal biomedical and medical 2D and 3D images. We compare the performance of four Generative Adversarial Network (GAN)-based I2I translation methods and one contrastive representation learning method, subsequently combined with two representative monomodal registration methods, to judge the effectiveness of modality translation for multimodal image registration. We evaluate these method combinations on four publicly available multimodal (2D and 3D) datasets and compare with the performance of registration achieved by several well-known approaches acting directly on multimodal image data. Our results suggest that, although I2I translation may be helpful when the modalities to register are clearly correlated, registration of modalities which express distinctly different properties of the sample are not well handled by the I2I translation approach. The evaluated representation learning method, which aims to find abstract image-like representations of the information shared between the modalities, manages better, and so does the Mutual Information maximisation approach, acting directly on the original multimodal images. We share our complete experimental setup as open-source (https://github.com/MIDA-group/MultiRegEval), including method implementations, evaluation code, and all datasets, for further reproducing and benchmarking. [ABSTRACT FROM AUTHOR]

Otoliths (ear-stones) in the inner ears of vertebrates containing visible year zones are used extensively to determine fish age. Analysis of otoliths is a time-consuming and difficult task that requires the education of human experts. Human age estimates are inconsistent, as several readings by the same human expert might result in different ages assigned to the same otolith, in addition to an inherent bias between readers. To improve efficiency and resolve inconsistent results in the age reading from otolith images by human experts, an automated procedure based on convolutional neural networks (CNNs), a class of deep learning models suitable for image processing, is investigated. We applied CNNs that perform image regression to estimate the age of Greenland halibut (Reinhardtius hippoglossoides) with good results for individual ages as well as the overall age distribution, with an average CV of about 10% relative to the read ages by experts. In addition, the density distribution of predicted ages resembles the density distribution of the ground truth. By using k*l-fold cross-validation, we test all available samples, and we show that the results are rather sensitive to the choice of test set. Finally, we apply explanation techniques to analyze the decision process of deep learning models. In particular, we produce heatmaps indicating which input features that are the most important in the computation of predicted age. [ABSTRACT FROM AUTHOR]

The analysis of pathological images, such as cell counting and nuclear morphological measurement, is an essential part in clinical histopathology researches. Due to the diversity of uncertain cell boundaries after staining, automated nuclei segmentation of Hematoxylin-Eosin (HE) stained pathological images remains challenging. Although better performances could be achieved than most of classic image processing methods do, manual labeling is still necessary in a majority of current machine learning based segmentation strategies, which restricts further improvements of efficiency and accuracy. Aiming at the requirements of stable and efficient high-throughput pathological image analysis, an automated Feature Global Delivery Connection Network (FGDC-net) is proposed for nuclei segmentation of HE stained images. Firstly, training sample patches and their corresponding asymmetric labels are automatically generated based on a Full Mixup strategy from RGB to HSV color space. Secondly, in order to add connections between adjacent layers and achieve the purpose of feature selection, FGDC module is designed by removing the jumping connections between codecs commonly used in UNet-based image segmentation networks, which learns the relationships between channels in each layer and pass information selectively. Finally, a dynamic training strategy based on mixed loss is used to increase the generalization capability of the model by flexible epochs. The proposed improvements were verified by the ablation experiments on multiple open databases and own clinical meningioma dataset. Experimental results on multiple datasets showed that FGDC-net could effectively improve the segmentation performances of HE stained pathological images without manual interventions, and provide valuable references for clinical pathological analysis. [ABSTRACT FROM AUTHOR]

This report describes how image processing harnessed to multivariate analysis techniques can be used as a bio-analytical tool for mastitis screening in cows using milk samples collected from 48 animals (32 from Jersey, 7 from Gir, and 9 from Guzerat cow breeds), totalizing a dataset of 144 sequential images was collected and analyzed. In this context, this methodology was developed based on the lactoperoxidase activity to assess mastitis using recorded images of a cuvette during a simple experiment and subsequent image treatments with an R statistics platform. The color of the sample changed from white to brown upon its exposure to reagents, which is a consequence of lactoperoxidase enzymatic reaction. Data analysis was performed to extract the channels from the RGB (Red-Green-Blue) color system, where the resulting dataset was evaluated with Principal Component Analysis (PCA), Multiple Linear Regression (MLR), and Second-Order Regression (SO). Interesting results in terms of enzymatic activity correlation (R2 = 0.96 and R2 = 0.98 by MLR and SO, respectively) and of somatic cell count (R2 = 0.97 and R2 = 0.99 by MLR and SO, respectively), important mastitis indicators, were obtained using this simple method. Additionally, potential advantages can be accessed such as quality control of the dairy chain, easier bovine mastitis prognosis, lower cost, analytical frequency, and could serve as an evaluative parameter to verify the health of the mammary gland. [ABSTRACT FROM AUTHOR]

Focus of this study is to design an automated image processing pipeline for handling uncontrolled acquisition conditions of images acquired in the field. The pipeline has been tested on the automated identification and count of uncapped brood cells in honeybee (Apis Mellifera) comb images to reduce the workload of beekeepers during the study of the hygienic behavior of honeybee colonies. The images used to develop and test the model were acquired by beekeepers on different days and hours in summer 2020 and under uncontrolled conditions. This resulted in images differing for background noise, illumination, color, comb tilts, scaling, and comb sizes. All the available 127 images were manually cropped to approximately include the comb area. To obtain an unbiased evaluation, the cropped images were randomly split into a training image set (50 images), which was used to develop and tune the proposed model, and a test image set (77 images), which was solely used to test the model. To reduce the effects of varied illuminations or exposures, three image enhancement algorithms were tested and compared followed by the Hough Transform, which allowed identifying individual cells to be automatically counted. All the algorithm parameters were automatically chosen on the training set by grid search. When applied to the 77 test images the model obtained a correlation of 0.819 between the automated counts and the experts' counts. To provide an assessment of our model with publicly available images acquired by a different equipment and under different acquisition conditions, we randomly extracted 100 images from a comb image dataset made available by a recent literature work. Though it has been acquired under controlled exposure, the images in this new set have varied illuminations; anyhow, our pipeline obtains a correlation between automatic and manual counts equal to 0.997. In conclusion, our tests on the automatic count of uncapped honey bee comb cells acquired in the field and on images extracted from a publicly available dataset suggest that the hereby generated pipeline successfully handles varied noise artifacts, illumination, and exposure conditions, therefore allowing to generalize our method to different acquisition settings. Results further improve when the acquisition conditions are controlled. [ABSTRACT FROM AUTHOR]

Developments in high-throughput microscopy have made it possible to collect huge amounts of cell image data that are difficult to analyse manually. Machine learning (e.g., deep learning) is often employed to automate the extraction of information from these data, such as cell counting, cell type classification and image segmentation. However, the effects of different imaging methods on the accuracy of image processing have not been examined systematically. We studied the effects of different imaging methods on the performance of machine learning-based cell type classifiers. We observed lymphoid-primed multipotential progenitor (LMPP) and pro-B cells using three imaging methods: differential interference contrast (DIC), phase contrast (Ph) and bright-field (BF). We examined the classification performance of convolutional neural networks (CNNs) with each of them and their combinations. CNNs achieved an area under the receiver operating characteristic (ROC) curve (AUC) of ~0.9, which was significantly better than when the classifier used only cell size or cell contour shape as input. However, no significant differences were found between imaging methods and focal positions. [ABSTRACT FROM AUTHOR]

Automated image processing approaches are indispensable for many biomedical experiments and help to cope with the increasing amount of microscopy image data in a fast and reproducible way. Especially state-of-the-art deep learning-based approaches most often require large amounts of annotated training data to produce accurate and generalist outputs, but they are often compromised by the general lack of those annotated data sets. In this work, we propose how conditional generative adversarial networks can be utilized to generate realistic image data for 3D fluorescence microscopy from annotation masks of 3D cellular structures. In combination with mask simulation approaches, we demonstrate the generation of fully-annotated 3D microscopy data sets that we make publicly available for training or benchmarking. An additional positional conditioning of the cellular structures enables the reconstruction of position-dependent intensity characteristics and allows to generate image data of different quality levels. A patch-wise working principle and a subsequent full-size reassemble strategy is used to generate image data of arbitrary size and different organisms. We present this as a proof-of-concept for the automated generation of fully-annotated training data sets requiring only a minimum of manual interaction to alleviate the need of manual annotations. [ABSTRACT FROM AUTHOR]

The ability to automatically detect and classify populations of cells in tissue sections is paramount in a wide variety of applications ranging from developmental biology to pathology. Although deep learning algorithms are widely applied to microscopy data, they typically focus on segmentation which requires extensive training and labor-intensive annotation. Here, we utilized object detection networks (neural networks) to detect and classify targets in complex microscopy images, while simplifying data annotation. To this end, we used a RetinaNet model to classify genetically labeled neurons and glia in the brains of Mosaic Analysis with Double Markers (MADM) mice. Our initial RetinaNet-based model achieved an average precision of 0.90 across six classes of cells differentiated by MADM reporter expression and their phenotype (neuron or glia). However, we found that a single RetinaNet model often failed when encountering dense and saturated glial clusters, which show high variability in their shape and fluorophore densities compared to neurons. To overcome this, we introduced a second RetinaNet model dedicated to the detection of glia clusters. Merging the predictions of the two computational models significantly improved the automated cell counting of glial clusters. The proposed cell detection workflow will be instrumental in quantitative analysis of the spatial organization of cellular populations, which is applicable not only to preparations in neuroscience studies, but also to any tissue preparation containing labeled populations of cells. [ABSTRACT FROM AUTHOR]