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Cryo-electron micrograph images have various characteristics such as varying sizes, shapes, and distribution densities of individual particles, severe background noise, high levels of impurities, irregular shapes, blurred edges, and similar color to the background. How to demonstrate good adaptability in the field of image vision by picking up single particles from multiple types of cryo-electron micrographs is currently a challenge in the field of cryo-electron micrographs. This paper combines the characteristics of the MixUp hybrid enhancement algorithm, enhances the image feature information in the pre-processing stage, builds a feature perception network based on the channel self-attention mechanism in the forward network of the Swin Transformer model network, achieving adaptive adjustment of self-attention mechanism between different single particles, increasing the network's tolerance to noise, Incorporating PReLU activation function to enhance information exchange between pixel blocks of different single particles, and combining the Cross-Entropy function with the softmax function to construct a classification network based on Swin Transformer suitable for cryo-electron micrograph single particle detection model (Swin-cryoEM), achieving mixed detection of multiple types of single particles. Swin-cryoEM algorithm can better solve the problem of good adaptability in picking single particles of many types of cryo-electron micrographs, improve the accuracy and generalization ability of the single particle picking method, and provide high-quality data support for the three-dimensional reconstruction of a single particle. In this paper, ablation experiments and comparison experiments were designed to evaluate and compare Swin-cryoEM algorithms in detail and comprehensively on multiple datasets. The Average Precision is an important evaluation index of the evaluation model, and the optimal Average Precision reached 95.5% in the training stage Swin-cryoEM, and the single particle picking performance was also superior in the prediction stage. This model inherits the advantages of the Swin Transformer detection model and is superior to mainstream models such as Faster R-CNN and YOLOv5 in terms of the single particle detection capability of cryo-electron micrographs. [ABSTRACT FROM AUTHOR]

This study focuses on the load balancing of the transactions in the blockchain. The problem is how to assign these transactions to the blocks. The objective is to guarantee a load balancing of the workload in the time of blocks. The proposed problem is an NP-hard one. To face the hardness of the studied problem, the challenge is to develop algorithms that solve the problem approximately. Finding an approximate solution is a real challenge. In this paper, nine algorithms are proposed. These algorithms are based on the dispatching-rules method, randomization approach, clustering algorithms, and iterative method. The proposed algorithms return approximate solutions in a remarkable time. In addition, in this paper, a novel architecture composed of blocks is proposed. This architecture adds the component "Balancer". This component is responsible to call the best-proposed algorithm and solve the scheduling problem in a polynomial time. In addition, the proposed work helps users to solve the problem of big data concurrency. These algorithms are coded and compared. The performance of these algorithms is tested over three classes of instances. These classes are generated based on uniform distribution. The total number of instances tested is 1350. The average gap, execution time, and the percentage of the best-reached value are used as metrics to measure the performance of the proposed algorithms. Experimental results show the performance of these algorithms and a comparison between them is discussed. The experimental results show that the best algorithm is best-mi-transactions iterative multi-choice with 93.9% in an average running time of 0.003 s. [ABSTRACT FROM AUTHOR]

In the paper, we proposed a deep learning-based industrial equipment detection algorithm ROMS R-CNN (Rotation Occlusion Multi-Scale Region-CNN). It can solve the problem of inaccurate detection of industrial equipment under complex working conditions such as multi-scale ratio, rotation tilt, occlusion and overlap. The method proposed in this paper first is to construct the MobileNetV2 as the feature pyramid network, and then to combine high semantic information with high resolution information solved industrial equipment detection of different scales. Secondly, a specific rotation anchor scheme is proposed, and the data set is clustered through the k-means algorithm to obtain a specific aspect ratio. Combined with the rotation angle, a rotation anchor of any direction and size is generated to solve the problem of easy tilting of industrial equipment. Finally, a Non-Maximum Suppression algorithm with penalty factors is introduced to solve the overlapping in industrial equipment detection. The experimental results in common industrial equipment detection show that this method is better than other algorithms, significantly improves the missed detection and false detection, and the mAP reaches 0.939. [ABSTRACT FROM AUTHOR]

With the rapid development of economy and the acceleration of urbanization, the garbage produced by urban residents also increases with the increase of population. In many big cities, the phenomenon of "garbage siege" has seriously affected the development of cities and the lives of residents. Sanitary landfill is an important way of municipal solid waste disposal. However, due to the restriction of social, environmental and economic conditions, landfill site selection has become a very challenging task. In addition, landfill site selection is full of uncertainty and complexity due to the lack of cognitive ability of decision-makers and the existence of uncertain information in the decision-making process. Therefore, a novel multi-attribute decision making method based on q-rung orthopair probabilistic hesitant fuzzy power weight Muirhead mean operator is proposed in this paper, which can solve the problem of landfill site selection well. This method uses probability to represent the hesitance of decision maker and retains decision information more comprehensively. The negative effect of abnormal data on the decision result is eliminated by using the power average operator. Muirhead mean operator is used to describe the correlation between attributes. Then, an example of landfill site selection is given to verify the effectiveness of the proposed method, and the advantages of the proposed method are illustrated by parameter analysis and comparative analysis. The results show that this method has a wider space for information expression, gives the decision maker a great degree of freedom in decision-making, and has robustness. [ABSTRACT FROM AUTHOR]

In this paper we compare systematically the most promising neuroevolutionary methods and two new original methods on the double-pole balancing problem with respect to: the ability to discover solutions that are robust to variations of the environment, the speed with which such solutions are found, and the ability to scale-up to more complex versions of the problem. The results indicate that the two original methods introduced in this paper and the Exponential Natural Evolutionary Strategy method largely outperform the other methods with respect to all considered criteria. The results collected in different experimental conditions also reveal the importance of regulating the selective pressure and the importance of exposing evolving agents to variable environmental conditions. The data collected and the results of the comparisons are used to identify the most effective methods and the most promising research directions. [ABSTRACT FROM AUTHOR]

This paper investigates a well-known complex combinatorial problem known as the vehicle routing problem with time windows (VRPTW). Unlike the standard vehicle routing problem, each customer in the VRPTW is served within a given time constraint. This paper solves the VRPTW using an improved artificial bee colony (IABC) algorithm. The performance of this algorithm is improved by a local optimization based on a crossover operation and a scanning strategy. Finally, the effectiveness of the IABC is evaluated on some well-known benchmarks. The results demonstrate the power of IABC algorithm in solving the VRPTW. [ABSTRACT FROM AUTHOR]

Selecting a cohort from a set of candidates is a common task within and beyond academia. Admitting students, awarding grants, and choosing speakers for a conference are situations where human biases may affect the selection of any particular candidate, and, thereby the composition of the final cohort. In this paper, we propose a new algorithm, entrofy, designed to be part of a human-in-the-loop decision making strategy aimed at making cohort selection as just, transparent, and accountable as possible. We suggest embedding entrofy in a two-step selection procedure. During a merit review, the committee selects all applicants, submissions, or other entities that meet their merit-based criteria. This often yields a cohort larger than the admissible number. In the second stage, the target cohort can be chosen from this meritorious pool via a new algorithm and software tool called entrofy. entrofy optimizes differences across an assignable set of categories selected by the human committee. Criteria could include academic discipline, home country, experience with certain technologies, or other quantifiable characteristics. The entrofy algorithm then yields the approximation of pre-defined target proportions for each category by solving the tie-breaking problem with provable performance guarantees. We show how entrofy selects cohorts according to pre-determined characteristics in simulated sets of applications and demonstrate its use in a case study of Astro Hack Week. This two stage candidate and cohort selection process allows human judgment and debate to guide the assessment of candidates' merit in step 1. Then the human committee defines relevant diversity criteria which will be used as computational parameters in entrofy. Once the parameters are defined, the set of candidates who meet the minimum threshold for merit are passed through the entrofy cohort selection procedure in step 2 which yields a cohort of a composition as close as possible to the computational parameters defined by the committee. This process has the benefit of separating the meritorious assessment of candidates from certain elements of their diversity and from some considerations around cohort composition. It also increases the transparency and auditability of the process, which enables, but does not guarantee, fairness. Splitting merit and diversity considerations into their own assessment stages makes it easier to explain why a given candidate was selected or rejected, though it does not eliminate the possibility of objectionable bias. [ABSTRACT FROM AUTHOR]

In the carrier-based coverage repair problem, a single mobile robot replaces damaged sensors by picking up spare ones in the region of interest or carrying them from a base station in wireless sensor and robot networks. The objective is to find the shortest path of the robot. The problem is an extension of the traveling salesman problem (TSP). Thus, it is also called the one-commodity traveling salesman problem with selective pickup and delivery (1-TSP-SELPD). In order to solve this problem in a larger sensor distribution scenario more efficiently, we propose a two-stage approach in this paper. In the first stage, the mature and effective Lin–Kernighan–Helsgaun (LKH) algorithm is used to form a Hamiltonian cycle for all delivery nodes, which is regarded as a heuristic for the second stage. In the second stage, elliptical regions are set for selecting pickup nodes‚ and an edge-ordered list (candidate edge list, CEL) is constructed to provide major axes for the ellipses. The process of selecting pickup nodes and constructing the CEL is repeated until all the delivery nodes are visited. The final CEL stores a feasible solution. To update it, three operations—expansion, extension, and constriction—are applied to the CEL. The experimental results show that the proposed method reduces the computing time and achieves better results in higher-dimensional problems, which may facilitate the provision of solutions for more complicated sensor networks and can contribute to the development of effective and efficient algorithms for the one-commodity pickup-and-delivery traveling salesman problem (1-PDTSP). [ABSTRACT FROM AUTHOR]

Orienteering problem (OP) is a routing problem, where the aim is to generate a path through set of nodes, which would maximize total score and would not exceed the budget. In this paper, we present an extension of classic OP—Orienteering Problem with Functional Profits (OPFP), where the score of a specific point depends on its characteristics, position in the route, and other points in the route. For solving OPFP, we developed an open-source framework for solving orienteering problems, which utilizes four core components of OP in its modular architecture. Fully-written in Go programming language our framework can be extended for solving different types of tasks with different algorithms; this was demonstrated by implementation of two popular algorithms for OP solving—Ant Colony Optimization and Recursive Greedy Algorithm. Computational efficiency of the framework was shown through solving four well-known OP types: classic Orienteering Problem (OP), Orienteering Problem with Compulsory Vertices (OPCV), Orienteering Problem with Time Windows (OPTW), and Time Dependent Orienteering Problem (TDOP) along with OPFP. Experiments were conducted on a large multi-source dataset for Saint Petersburg, Russia, containing data from Instagram, TripAdvisor, Foursquare and official touristic website. Our framework is able to construct touristic paths for different OP types within few seconds using dataset with thousands of points of interest. [ABSTRACT FROM AUTHOR]

Wang et al. proposed a method for obtaining elliptic curves with embedding degree 1 for securing critical infrastructures, and presented several elliptic curves generated by their method with torsion points of 160 bits and 189 bits orders. They also presented some experimental results and claimed that their implementation of an elliptic curve generated with their method is faster than an implementation for embedded devices presented by Bertoni et al. In this paper, we point out that the security and efficiency claims given by Wang et al. are flawed. Specifically, we show that it is possible to solve finite field discrete logarithm problems defined over their elliptic curves in practice. On the elliptic curves with torsion points of 160 bits orders generated by Wang et al., their instances of finite field discrete logarithm problems are solved in around 4 hours by using a standard desktop PC. On the torsion points of 189 bits orders, their instances are solved in around 10 days by using two standard desktop PCs. The hardness of the finite field discrete logarithm problems is one of the most important bases of security; therefore, their elliptic curves should not be used for cryptographic purposes. [ABSTRACT FROM AUTHOR]

Viral marketing has been one of the main marketing modes. However, theoretical study of viral marketing is still lacking. This paper focuses on the problem of developing a cost-effective dynamic discount pricing strategy for a viral marketing campaign. First, based on a novel word-of-mouth propagation model, we model the original problem as an optimal control problem. Second, we show that the optimal control problem admits an optimal control and present the optimality system for solving the optimal control problem. Next, we solve some optimal control models to get their respective optimal dynamic discount pricing strategies. Finally, we examine the effect of some factors on the maximum marketing profit. These results contribute to gaining insight into viral marketing. [ABSTRACT FROM AUTHOR]

Distribution centers (DCs) are an important part of the modern logistics system. The selection of a location for a DC is significant for saving costs and reducing externalities caused by distribution. In this paper, we propose a new hybrid method based on the analytic hierarchy process (AHP) and 2-tuple hybrid ordered weighted averaging (THOWA) to select the location of a DC in a megacity. First, we propose a new set of evaluation criteria integrating economic, political, social and ecological information based on the characteristics of Chinese megacities. Second, subjective criteria weights are calculated by AHP combining the evaluation of logistics experts. Third, experts from academia, enterprise and government assess the performance of alternatives. In addition, the overall evaluation values are aggregated by an improved THOWA operator to rank the alternatives. Finally, we conduct a sensitivity analysis to investigate the influence of criteria weights on the decision-making process. The proposed method is novel and addresses the uncertainty under limited quantitative information, which has the advantages of avoiding information loss and distortion problems in the integrating process and operating linguistic evaluation information effectively. The proposed method can be practically applied by municipal planning departments in deciding on the location of new DCs. A numerical application of the proposed method is provided. [ABSTRACT FROM AUTHOR]

Little is known about the interplay between affective and cognitive processes of decision making within the bounded rationality perspective, in particular for the debate on adaptive decision making and strategy selection. This gap in the knowledge is particularly important as affect and deliberation may direct preferences in opposite directions. How do decision makers solve such dissonance? In this paper, we address this question by exploring the use of integral affect as a choice heuristic in comparison with and in conjunction to “take the best,” and weighted addition of attributes (WADD). We operationalize theories of reliance on affect in choice through a "Take the emotionally best" algorithm. Its predictive power is experimentally tested against other models, including mixed-sequential cognitive/affective procedures. We find that individual decisions are better predicted by a sequential combination of "Take the emotionally best" and "Take the best" with a slight dominance of the former. Conditions of cognitive/affective ambivalence, low discrimination ability and high complexity provide the cognitive architecture where such blended choice strategies predict decisions more precisely. This implies that reliance on integral affect may precede the use of cognitive cues following an ecological rationality perspective rather than supporting a kind of competition between affect and cognition as implied in current literature. [ABSTRACT FROM AUTHOR]

This paper presents a discretization methodology applied to the NBV (Next Best View) problem, which consists of determining the heuristical best position of the next scan. This new methodology is a hybrid process between a homogenous voxelization and an octree structure that preserves the advantages of both methods. An octree structure is not directly applicable to the NBV problem: as the point cloud grows with every successive scanning, the limits and position of the discretization, octree structure must coincide, in order to transfer the information from one scan to the next. This problem is solved by applying a first coarse voxelization, followed by the division of each voxel in an octree structure. In addition, a previous methodology for solving the NBV problem has been adapted to make use of this novel approach. Results show that the new method is three times faster than the homogenous voxelization for a maximum resolution of 0.2m. For this target resolution of 0.2m, the number of voxels/octants in the discretization is reduced approximately by a 400%, from 35.360 to 8.937 for the study case presented. [ABSTRACT FROM AUTHOR]

The problem that passengers are hard to take taxis while empty driving rate is high widely exists under the traditional taxi operation mode. The implementation of taxi carpooling mode can alleviate the problem in a certain extent. The objective of this study is to optimize the taxi carpooling path. Firstly, the taxi carpooling path optimization model with single objective and its extended model with multiple objectives are built respectively. Then, the single objective path optimization model of taxi carpooling is solved based on the improved single objective genetic algorithm, and the multiple-objective path optimization model of taxi carpooling is solved based on the improved multiple-objective genetic algorithm. Finally, a case study is carried out based on a road network with 24 nodes. The case study results show the path optimization models and algorithms of taxi carpooling proposed in the paper can quickly get the taxi carpooling path, and can increase the income of taxi driver while reduce the cost for passengers. [ABSTRACT FROM AUTHOR]

Since wind power is integrated into the thermal power operation system, dynamic economic emission dispatch (DEED) has become a new challenge due to its uncertain characteristics. This paper proposes an adaptive grid based multi-objective Cauchy differential evolution (AGB-MOCDE) for solving stochastic DEED with wind power uncertainty. To properly deal with wind power uncertainty, some scenarios are generated to simulate those possible situations by dividing the uncertainty domain into different intervals, the probability of each interval can be calculated using the cumulative distribution function, and a stochastic DEED model can be formulated under different scenarios. For enhancing the optimization efficiency, Cauchy mutation operation is utilized to improve differential evolution by adjusting the population diversity during the population evolution process, and an adaptive grid is constructed for retaining diversity distribution of Pareto front. With consideration of large number of generated scenarios, the reduction mechanism is carried out to decrease the scenarios number with covariance relationships, which can greatly decrease the computational complexity. Moreover, the constraint-handling technique is also utilized to deal with the system load balance while considering transmission loss among thermal units and wind farms, all the constraint limits can be satisfied under the permitted accuracy. After the proposed method is simulated on three test systems, the obtained results reveal that in comparison with other alternatives, the proposed AGB-MOCDE can optimize the DEED problem while handling all constraint limits, and the optimal scheme of stochastic DEED can decrease the conservation of interval optimization, which can provide a more valuable optimal scheme for real-world applications. [ABSTRACT FROM AUTHOR]

A popular objective criterion for partitioning a set of actors into core and periphery subsets is the maximization of the correlation between an ideal and observed structure associated with intra-core and intra-periphery ties. The resulting optimization problem has commonly been tackled using heuristic procedures such as relocation algorithms, genetic algorithms, and simulated annealing. In this paper, we present a computationally efficient simulated annealing algorithm for maximum correlation core/periphery partitioning of binary networks. The algorithm is evaluated using simulated networks consisting of up to 2000 actors and spanning a variety of densities for the intra-core, intra-periphery, and inter-core-periphery components of the network. Core/periphery analyses of problem solving, trust, and information sharing networks for the frontline employees and managers of a consumer packaged goods manufacturer are provided to illustrate the use of the model. [ABSTRACT FROM AUTHOR]

Global optimization is challenging to solve due to its nonlinearity and multimodality. Traditional algorithms such as the gradient-based methods often struggle to deal with such problems and one of the current trends is to use metaheuristic algorithms. In this paper, a novel hybrid population-based global optimization algorithm, called hybrid firefly algorithm (HFA), is proposed by combining the advantages of both the firefly algorithm (FA) and differential evolution (DE). FA and DE are executed in parallel to promote information sharing among the population and thus enhance searching efficiency. In order to evaluate the performance and efficiency of the proposed algorithm, a diverse set of selected benchmark functions are employed and these functions fall into two groups: unimodal and multimodal. The experimental results show better performance of the proposed algorithm compared to the original version of the firefly algorithm (FA), differential evolution (DE) and particle swarm optimization (PSO) in the sense of avoiding local minima and increasing the convergence rate. [ABSTRACT FROM AUTHOR]

To solve the problem of task scheduling in the cloud computing system, this paper proposes a scheduling algorithm for cloud computing based on the driver of dynamic essential path (DDEP). This algorithm applies a predecessor-task layer priority strategy to solve the problem of constraint relations among task nodes. The strategy assigns different priority values to every task node based on the scheduling order of task node as affected by the constraint relations among task nodes, and the task node list is generated by the different priority value. To address the scheduling order problem in which task nodes have the same priority value, the dynamic essential long path strategy is proposed. This strategy computes the dynamic essential path of the pre-scheduling task nodes based on the actual computation cost and communication cost of task node in the scheduling process. The task node that has the longest dynamic essential path is scheduled first as the completion time of task graph is indirectly influenced by the finishing time of task nodes in the longest dynamic essential path. Finally, we demonstrate the proposed algorithm via simulation experiments using Matlab tools. The experimental results indicate that the proposed algorithm can effectively reduce the task Makespan in most cases and meet a high quality performance objective. [ABSTRACT FROM AUTHOR]

Traffic state estimation from the floating car system is a challenging problem. The low penetration rate and random distribution make available floating car samples usually cover part space and time points of the road networks. To obtain a wide range of traffic state from the floating car system, many methods have been proposed to estimate the traffic state for the uncovered links. However, these methods cannot provide traffic state of the entire road networks. In this paper, the traffic state estimation is transformed to solve a missing data imputation problem, and the tensor completion framework is proposed to estimate missing traffic state. A tensor is constructed to model traffic state in which observed entries are directly derived from floating car system and unobserved traffic states are modeled as missing entries of constructed tensor. The constructed traffic state tensor can represent spatial and temporal correlations of traffic data and encode the multi-way properties of traffic state. The advantage of the proposed approach is that it can fully mine and utilize the multi-dimensional inherent correlations of traffic state. We tested the proposed approach on a well calibrated simulation network. Experimental results demonstrated that the proposed approach yield reliable traffic state estimation from very sparse floating car data, particularly when dealing with the floating car penetration rate is below 1%. [ABSTRACT FROM AUTHOR]

The optimal link removal (OLR) problem aims at removing a given number of links of a network so that the spectral radius of the residue network obtained by removing the links from the network attains the minimum. Torus networks are a class of regular networks that have witnessed widespread applications. This paper addresses three subproblems of the OLR problem for torus networks, where two or three or four edges are removed. For either of the three subproblems, a link-removing scheme is described. Exhaustive searches show that, for small-sized tori, each of the proposed schemes produces an optimal solution to the corresponding subproblem. Monte-Carlo simulations demonstrate that, for medium-sized tori, each of the three schemes produces a solution to the corresponding subproblem, which is optimal when compared to a large set of randomly produced link-removing schemes. Consequently, it is speculated that each of the three schemes produces an optimal solution to the corresponding subproblem for all torus networks. The set of links produced by each of our schemes is evenly distributed over a network, which may be a common feature of an optimal solution to the OLR problem for regular networks. [ABSTRACT FROM AUTHOR]

This paper proposes a new formulation for the multi-objective optimal power flow (MOOPF) problem for meshed power networks considering distributed generation. An efficacious multi-objective fuzzy linear programming optimization (MFLP) algorithm is proposed to solve the aforementioned problem with and without considering the distributed generation (DG) effect. A variant combination of objectives is considered for simultaneous optimization, including power loss, voltage stability, and shunt capacitors MVAR reserve. Fuzzy membership functions for these objectives are designed with extreme targets, whereas the inequality constraints are treated as hard constraints. The multi-objective fuzzy optimal power flow (OPF) formulation was converted into a crisp OPF in a successive linear programming (SLP) framework and solved using an efficient interior point method (IPM). To test the efficacy of the proposed approach, simulations are performed on the IEEE 30-busand IEEE 118-bus test systems. The MFLP optimization is solved for several optimization cases. The obtained results are compared with those presented in the literature. A unique solution with a high satisfaction for the assigned targets is gained. Results demonstrate the effectiveness of the proposed MFLP technique in terms of solution optimality and rapid convergence. Moreover, the results indicate that using the optimal DG location with the MFLP algorithm provides the solution with the highest quality. [ABSTRACT FROM AUTHOR]

Cyborg intelligence is an emerging kind of intelligence paradigm. It aims to deeply integrate machine intelligence with biological intelligence by connecting machines and living beings via neural interfaces, enhancing strength by combining the biological cognition capability with the machine computational capability. Cyborg intelligence is considered to be a new way to augment living beings with machine intelligence. In this paper, we build rat cyborgs to demonstrate how they can expedite the maze escape task with integration of machine intelligence. We compare the performance of maze solving by computer, by individual rats, and by computer-aided rats (i.e. rat cyborgs). They were asked to find their way from a constant entrance to a constant exit in fourteen diverse mazes. Performance of maze solving was measured by steps, coverage rates, and time spent. The experimental results with six rats and their intelligence-augmented rat cyborgs show that rat cyborgs have the best performance in escaping from mazes. These results provide a proof-of-principle demonstration for cyborg intelligence. In addition, our novel cyborg intelligent system (rat cyborg) has great potential in various applications, such as search and rescue in complex terrains. [ABSTRACT FROM AUTHOR]

Two new PRP conjugate Algorithms are proposed in this paper based on two modified PRP conjugate gradient methods: the first algorithm is proposed for solving unconstrained optimization problems, and the second algorithm is proposed for solving nonlinear equations. The first method contains two aspects of information: function value and gradient value. The two methods both possess some good properties, as follows: 1)βk ≥ 0 2) the search direction has the trust region property without the use of any line search method 3) the search direction has sufficient descent property without the use of any line search method. Under some suitable conditions, we establish the global convergence of the two algorithms. We conduct numerical experiments to evaluate our algorithms. The numerical results indicate that the first algorithm is effective and competitive for solving unconstrained optimization problems and that the second algorithm is effective for solving large-scale nonlinear equations. [ABSTRACT FROM AUTHOR]

Several variable selection algorithms in multivariate calibration can be accelerated using Graphics Processing Units (GPU). Among these algorithms, the Firefly Algorithm (FA) is a recent proposed metaheuristic that may be used for variable selection. This paper presents a GPU-based FA (FA-MLR) with multiobjective formulation for variable selection in multivariate calibration problems and compares it with some traditional sequential algorithms in the literature. The advantage of the proposed implementation is demonstrated in an example involving a relatively large number of variables. The results showed that the FA-MLR, in comparison with the traditional algorithms is a more suitable choice and a relevant contribution for the variable selection problem. Additionally, the results also demonstrated that the FA-MLR performed in a GPU can be five times faster than its sequential implementation. [ABSTRACT FROM AUTHOR]

In biological systems, the dynamic analysis method has gained increasing attention in the past decade. The Boolean network is the most common model of a genetic regulatory network. The interactions of activation and inhibition in the genetic regulatory network are modeled as a set of functions of the Boolean network, while the state transitions in the Boolean network reflect the dynamic property of a genetic regulatory network. A difficult problem for state transition analysis is the finding of attractors. In this paper, we modeled the genetic regulatory network as a Boolean network and proposed a solving algorithm to tackle the attractor finding problem. In the proposed algorithm, we partitioned the Boolean network into several blocks consisting of the strongly connected components according to their gradients, and defined the connection between blocks as decision node. Based on the solutions calculated on the decision nodes and using a satisfiability solving algorithm, we identified the attractors in the state transition graph of each block. The proposed algorithm is benchmarked on a variety of genetic regulatory networks. Compared with existing algorithms, it achieved similar performance on small test cases, and outperformed it on larger and more complex ones, which happens to be the trend of the modern genetic regulatory network. Furthermore, while the existing satisfiability-based algorithms cannot be parallelized due to their inherent algorithm design, the proposed algorithm exhibits a good scalability on parallel computing architectures. [ABSTRACT FROM AUTHOR]

In this paper, we consider the Minimum Reaction Insertion (MRI) problem for finding the minimum number of additional reactions from a reference metabolic network to a host metabolic network so that a target compound becomes producible in the revised host metabolic network in a Boolean model. Although a similar problem for larger networks is solvable in a flux balance analysis (FBA)-based model, the solution of the FBA-based model tends to include more reactions than that of the Boolean model. However, solving MRI using the Boolean model is computationally more expensive than using the FBA-based model since the Boolean model needs more integer variables. Therefore, in this study, to solve MRI for larger networks in the Boolean model, we have developed an efficient Integer Programming formalization method in which the number of integer variables is reduced by the notion of feedback vertex set and minimal valid assignment. As a result of computer experiments conducted using the data of metabolic networks of E. coli and reference networks downloaded from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database, we have found that the developed method can appropriately solve MRI in the Boolean model and is applicable to large scale-networks for which an exhaustive search does not work. We have also compared the developed method with the existing connectivity-based methods and FBA-based methods, and show the difference between the solutions of our method and the existing methods. A theoretical analysis of MRI is also conducted, and the NP-completeness of MRI is proved in the Boolean model. Our developed software is available at “http://sunflower.kuicr.kyoto-u.ac.jp/~rogi/minRect/minRect.html.” [ABSTRACT FROM AUTHOR]

In this paper, we describe a distributed coordination system that allows agents to seamlessly cooperate in problem solving by partially contributing to a problem solution and delegating the subproblems for which they do not have the required skills or knowledge to appropriate agents. The coordination mechanism relies on a dynamically built semantic overlay network that allows the agents to efficiently locate, even in very large unstructured networks, the necessary skills for a specific problem. Each agent performs partial contributions to the problem solution using a new distributed goal-directed version of the Graphplan algorithm. This new goal-directed version of the original Graphplan algorithm provides an efficient solution to the problem of "distraction", which most forward-chaining algorithms suffer from. We also discuss a set of heuristics to be used in the backward-search process of the planning algorithm in order to distribute this process amongst idle agents in an attempt to find a solution in less time. The evaluation results show that our approach is effective in building a scalable and efficient agent society capable of solving complex distributable problems. [ABSTRACT FROM AUTHOR]

The vertex coloring problem is a classical problem in combinatorial optimization that consists of assigning a color to each vertex of a graph such that no adjacent vertices share the same color, minimizing the number of colors used. Despite the various practical applications that exist for this problem, its NP-hardness still represents a computational challenge. Some of the best computational results obtained for this problem are consequences of hybridizing the various known heuristics. Automatically revising the space constituted by combining these techniques to find the most adequate combination has received less attention. In this paper, we propose exploring the heuristics space for the vertex coloring problem using evolutionary algorithms. We automatically generate three new algorithms by combining elementary heuristics. To evaluate the new algorithms, a computational experiment was performed that allowed comparing them numerically with existing heuristics. The obtained algorithms present an average 29.97% relative error, while four other heuristics selected from the literature present a 59.73% error, considering 29 of the more difficult instances in the DIMACS benchmark. [ABSTRACT FROM AUTHOR]