174 results on '"Chang, Jun"'
Search Results
2. Effect of optional biometric parameters in the Kane formula on intraocular lens power calculation.
- Author
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Xiao-Yu Li, Xuan Liao, Jia Lin, Chang-Jun Lan, and Qing-Qing Tan
- Subjects
Medicine ,Science - Abstract
PurposeTo investigate the effect of the optional biometric parameters lens thickness (LT) and center corneal thickness (CCT) in the Kane formula on intraocular lens (IOL) power calculation.MethodsA cross-sectional study included consecutive cataract patients who received uncomplicated cataract surgery with IOL implantation from May to September 2022 were enrolled. The ocular biometric parameters were obtained using IOLMaster 700 and then inputted into online Kane formula calculator. The IOL power was calculated for targeting emmetropia and compared between groups: not omitting (NO) group, omitting LT and CCT (OLC) group, omitting LT (OL) group and omitting CCT (OC) group. Further, according to the axial length (AL), anterior chamber depth (ACD), and mean keratometry (Km), the eyes were divided into three subgroups, respectively.Results1005 eyes of 1005 consecutive patients were included. There was no significant difference in IOL power between NO group and OC group (P = 0.064), and the median absolute difference (MedAD) was 0.05D. The IOL power in NO group showed significant differences from OLC group and OL group respectively (P < 0.001), and both MedAD values were 0.18D. Among AL subgroups, MedAD ranged from 0.06D to 0.35D in short eyes. Among ACD subgroups, the above values ranged from 0.06D to 0.23D in shallow ACD subgroup. Among Km subgroups, these values ranged from 0.05D to 0.31D in steep Km subgroup.ConclusionThe optional biometric parameter CCT has no effect on the calculation results of the Kane formula, whereas the parameter LT has a great influence on the Kane formula results for the IOL power calculation in cataract patients with short AL, shallow ACD and steep Km.
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- 2023
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3. Comparative efficacy of 0.1% and 0.15% Sodium Hyaluronate on lipid layer and meibomian glands following cataract surgery: A randomized prospective study.
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Yang, Seung Ahn, Jeong, Mu Ryang, Park, Cheon Ho, Cheon, Ki Bum, Chang, Jun Ho, and Lee, Ji Eun
- Abstract
Purpose: To compare the efficacy of a 0.15% HA with that of 0.1% HA eye drops for DES after cataract surgery. Methods: This study was double blinded, randomized and prospective study, and conducted in 69 participants (70 eyes) from Pusan National University Yangsan Hospital and executed from February 1, 2022 to November 30, 2022. Participants were adult cataract patients with normal lid position, not suffering from any other ocular disease and not meet the exclusion cirteria of clinical trial. Participants were randomly divided into two groups: 35 participants (17 males and 18 females) in the 0.1% HA group and 34 participants (19 males and 15 females) in the 0.15% HA group, receiving treatment six times daily for 6 weeks following cataract surgery. Subjective and objective assessments were performed at preoperative and postoperative visits, including ocular surface disease index score, tear break up time, corneal staining score, Schirmer's I test score, lipid layer thickness), meiboscore, and biochemical analysis of the eye drops. Results: Throughout the study, the postoperative ocular surface disease index score was significantly lower in the group receiving 0.15% hyaluronic acid than in the group receiving 0.1% hyaluronic acid. Additionally, the postoperative ocular surface disease index score showed a significant positive correlation with the postoperative use of 0.15% hyaluronic acid and the preoperative Schirmer's I test score. In multivariate analysis, treatment with 0.15% hyaluronic acid and the preoperative ocular surface disease index score were significant independent parameters affecting the postoperative ocular surface disease index score. Conclusion: The use of 0.15% hyaluronic acid is recommended for its potential advantages in alleviating symptoms following cataract surgery, making it a viable alternative to traditional 0.1% hyaluronic acid treatment. Trial registration: ISRCTN95830348. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Effect of optional biometric parameters in the Kane formula on intraocular lens power calculation
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Li, Xiao-Yu, primary, Liao, Xuan, additional, Lin, Jia, additional, Lan, Chang-Jun, additional, and Tan, Qing-Qing, additional
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- 2023
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5. Fate of antibiotic resistant E. coli and antibiotic resistance genes during full scale conventional and advanced anaerobic digestion of sewage sludge.
- Author
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Sky Redhead, Jeroen Nieuwland, Sandra Esteves, Do-Hoon Lee, Dae-Wi Kim, Jordan Mathias, Chang-Jun Cha, Mark Toleman, Richard Dinsdale, Alan Guwy, and Emma Hayhurst
- Subjects
Medicine ,Science - Abstract
Antibiotic resistant bacteria (ARB) and their genes (ARGs) have become recognised as significant emerging environmental pollutants. ARB and ARGs in sewage sludge can be transmitted back to humans via the food chain when sludge is recycled to agricultural land, making sludge treatment key to control the release of ARB and ARGs to the environment. This study investigated the fate of antibiotic resistant Escherichia coli and a large set of antibiotic resistance genes (ARGs) during full scale anaerobic digestion (AD) of sewage sludge at two U.K. wastewater treatment plants and evaluated the impact of thermal hydrolysis (TH) pre-treatment on their abundance and diversity. Absolute abundance of 13 ARGs and the Class I integron gene intI1 was calculated using single gene quantitative (q) PCR. High through-put qPCR analysis was also used to determine the relative abundance of 370 ARGs and mobile genetic elements (MGEs). Results revealed that TH reduced the absolute abundance of all ARGs tested and intI1 by 10-12,000 fold. After subsequent AD, a rebound effect was seen in many ARGs. The fate of ARGs during AD without pre-treatment was variable. Relative abundance of most ARGs and MGEs decreased or fluctuated, with the exception of macrolide resistance genes, which were enriched at both plants, and tetracyline and glycopeptide resistance genes which were enriched in the plant employing TH. Diversity of ARGs and MGEs decreased in both plants during sludge treatment. Principal coordinates analysis revealed that ARGs are clearly distinguished according to treatment step, whereas MGEs in digested sludge cluster according to site. This study provides a comprehensive within-digestor analysis of the fate of ARGs, MGEs and antibiotic resistant E. coli and highlights the effectiveness of AD, particularly when TH is used as a pre-treatment, at reducing the abundance of most ARGs and MGEs in sludgeand preventing their release into the environment.
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- 2020
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6. Association between lipid profile changes and risk of in-stent restenosis in ischemic stroke patients with intracranial stenosis: A retrospective cohort study
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Ryu, Jae-Chan, primary, Bae, Jae-Han, additional, Ha, Sang Hee, additional, Kwon, Boseong, additional, Song, Yunsun, additional, Lee, Deok Hee, additional, Kim, Bum Joon, additional, Kang, Dong-Wha, additional, Kwon, Sun U., additional, Kim, Jong S., additional, and Chang, Jun Young, additional
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- 2023
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7. Attacks on healthcare facilities as an indicator of violence against civilians in Syria: An exploratory analysis of open-source data.
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Sayaka Ri, Alden H Blair, Chang Jun Kim, and Rohini J Haar
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Medicine ,Science - Abstract
BackgroundGrasping the human cost of war requires comprehensive evaluation of multiple dimensions of conflict. While the number of civilian casualties is a frequently used indicator to evaluate intensity of violence in conflict, the inclusion of other indicators may provide a more complete understanding of how war impacts people and their communities. The Syrian conflict has been specifically marked by attacks against healthcare facilities, and the advancement of technology has provided an avenue for remote data analysis of conflict trends. This study aims to determine the feasibility of using publicly available, online data of attacks on healthcare facilities to better describe population-level violence in the Syrian Civil War.MethodsThis study utilized publicly available datasets from the Violations Documentation Center (VDC) and Physicians for Human Rights (PHR) to compare trends in attacks on healthcare facilities and civilian casualties from March 2011 to November 2017 in the Syrian Civil War. We used descriptive statistics, bivariate tests and a multivariable hypothesis testing model to measure the association between the two indicators while adjusting for confounding variables.ResultsWe examined for associations between attacks on healthcare facilities and overall civilian casualties. In the adjusted regression model, each attack on a healthcare facility in the Syrian conflict corresponded to an estimated 260 reported civilian casualties in the same month (95% CI: 227 to 294). This model adjusted for population displacement (using number of registered refugees as a proxy). The May 2014 interaction term, used a transition point of early/late war based on political events during that time, illustrated that each healthcare facility attack after May 2014 corresponded to a statistically significant decrease of 228 civilian deaths. This suggests that although attacks on healthcare facilities continued to contribute to overall civilian deaths, the scale that this was happening was lower after May 2014.ConclusionIn the Syrian Civil War, our findings suggest that the inclusion of other humanitarian indicators, such as attacks on hospitals, may add granularity to traditional indicators of violence (e.g. such as civilian casualties) to develop a more nuanced understanding of the warring tactics used and violence against civilians in the Syrian conflict. This exploratory case study represents a novel approach to utilizing open-source data along with statistical analysis to interpret violence against civilians. Future research could benefit from analyzing attacks on healthcare facilities and other civilian infrastructure concurrently with civilian casualty data for further data-driven utilization of open-source data.
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- 2019
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8. Blood pressure variability and early neurological deterioration according to the chronic kidney disease risk categories in minor ischemic stroke patients
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Ryu, Jae-Chan, primary, Bae, Jae-Han, additional, Ha, Sang Hee, additional, Chang, Jun Young, additional, Kang, Dong-Wha, additional, Kwon, Sun U., additional, Kim, Jong S., additional, Baek, Chung Hee, additional, and Kim, Bum Joon, additional
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- 2022
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9. Genome-wide analysis of day/night DNA methylation differences in Populus nigra.
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Chang-Jun Ding, Li-Xiong Liang, Shu Diao, Xiao-Hua Su, and Bing-Yu Zhang
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Medicine ,Science - Abstract
DNA methylation is an important mechanism of epigenetic modification. Methylation changes during stress responses and developmental processes have been well studied; however, their role in plant adaptation to the day/night cycle is poorly understood. In this study, we detected global methylation patterns in leaves of the black poplar Populus nigra 'N46' at 8:00 and 24:00 by methylated DNA immunoprecipitation sequencing (MeDIP-seq). We found 10,027 and 10,242 genes to be methylated in the 8:00 and 24:00 samples, respectively. The methylated genes appeared to be involved in multiple biological processes, molecular functions, and cellular components, suggesting important roles for DNA methylation in poplar cells. Comparing the 8:00 and 24:00 samples, only 440 differentially methylated regions (DMRs) overlapped with genic regions, including 193 hyper- and 247 hypo-methylated DMRs, and may influence the expression of 137 downstream genes. Most hyper-methylated genes were associated with transferase activity, kinase activity, and phosphotransferase activity, whereas most hypo-methylated genes were associated with protein binding, ATP binding, and adenyl ribonucleotide binding, suggesting that different biological processes were activated during the day and night. Our results indicated that methylated genes were prevalent in the poplar genome, but that only a few of these participated in diurnal gene expression regulation.
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- 2018
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10. Outbreaks of acute gastroenteritis associated with a re-emerging GII.P16-GII.2 norovirus in the spring of 2017 in Jiangsu, China.
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Jian-Guang Fu, Chao Shi, Cheng Xu, Qin Lin, Jun Zhang, Qian-Hua Yi, Chang-Jun Bao, Xiang Huo, Ye-Fei Zhu, Jing Ai, and Zheng Xing
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Medicine ,Science - Abstract
A total of 64 acute gastroenteritis outbreaks with 2,953 patients starting in December of 2016 and occurring mostly in the late spring of 2017 were reported in Jiangsu, China. A recombinant GII.P16-GII.2 norovirus variant was associated with 47 outbreaks (73.4%) for the gastroenteritis epidemic, predominantly occurring in February and March of 2017. Sequence analysis of the RNA-dependent RNA polymerase (RdRp) and capsid protein of the viral isolates from these outbreaks confirmed that this GII.P16-GII.2 strain was the GII.P16-GII.2 variant with the intergenotypic recombination, identified in Taiwan, Hong Kong, and other cities in China in 2016. This GII.P16-GII.2 recombinant variant appeared to a re-emerging strain, firstly identified in 2011-2012 from Japan and USA but might be independently originated from other GII.P16-GII.2 variants for sporadic and outbreaks of gastroenteritis in Japan and China before 2016. Further identification of unique amino acid mutations in both VP1 and RdRp of NoV strain as shown in this report may provide insight in explaining its structural and antigenic changes, potentially critical for the variant recombinant to gain its predominance in causing regional and worldwide epidemics.
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- 2017
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11. Risk Factors for Bunyavirus-Associated Severe Fever with Thrombocytopenia Syndrome: A Community-Based Case-Control Study.
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Jian-Li Hu, Zhi-Feng Li, Xiao-Chen Wang, Lei Hong, Hao He, Wei-Guo Chen, Lu-Xun Li, Ai-Hua Shen, Xue-Jian Liu, Shou-Guo Yuan, Jian-Gang Zhou, Wen-Wen Tan, Wei-Zhong Zhou, Fen-Yang Tang, Feng-Cai Zhu, and Chang-Jun Bao
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Medicine ,Science - Abstract
Severe fever with thrombocytopenia syndrome (SFTS) is an emerging infectious disease caused by a novel bunyavirus. Previous studies about risk factors for SFTSV infection have yielded inconsistent results, and behavior factors have not been fully clarified.A community-based, 1:4 matched case-control study was carried out to investigate the risk factors for SFTS in China. Cases of SFTS were defined as laboratory-confirmed cases that tested positive for real-time PCR (RT-PCR) for severe fever with thrombocytopenia syndrome bunyavirus (SFTSV) or positive for IgM antibodies against SFTSV. Controls of four neighborhood subjects were selected by matching for sex, age, and occupation. Standardized questionnaires were used to collect detailed information about their demographics and risk factors for SFTSV infection.A total of 334 subjects participated in the study including 69 cases and 265 controls. The median age of the cases was 59.5 years, 55.1% were male, and 87.0% were farmers. No differences in demographics were observed between cases and controls. In the final multivariate analysis, tick bites two weeks prior to disease onset (OR = 8.04, 95%CI 3.34-19.37) and the presence of weeds and shrubs around the house (OR = 3.46, 95%CI 0.96-12.46) were found to be risk factors for SFTSV infection; taking preventative measures during outdoor activities (OR = 0.12, 95%CI 0.01-1.01) provided greater protection from SFTSV infection.Our results further confirm that SFTSV is transmitted by tick bites and prove that preventative measures that reduce exposure to ticks can prevent SFTSV infection. More efforts should be directed toward health education and behavior change for high-risk populations, especially outdoor workers, in SFTS endemic areas.
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- 2016
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12. Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing.
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Hua Yang, Chao-Ling Wei, Hong-Wei Liu, Jun-Lan Wu, Zheng-Guo Li, Liang Zhang, Jian-Bo Jian, Ye-Yun Li, Yu-Ling Tai, Jing Zhang, Zheng-Zhu Zhang, Chang-Jun Jiang, Tao Xia, and Xiao-Chun Wan
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Medicine ,Science - Abstract
Tea is one of the most popular beverages across the world and is made exclusively from cultivars of Camellia sinensis. Many wild relatives of the genus Camellia that are closely related to C. sinensis are native to Southwest China. In this study, we first identified the distinct genetic divergence between C. sinensis and its wild relatives and provided a glimpse into the artificial selection of tea plants at a genome-wide level by analyzing 15,444 genomic SNPs that were identified from 18 cultivated and wild tea accessions using a high-throughput genome-wide restriction site-associated DNA sequencing (RAD-Seq) approach. Six distinct clusters were detected by phylogeny inferrence and principal component and genetic structural analyses, and these clusters corresponded to six Camellia species/varieties. Genetic divergence apparently indicated that C. taliensis var. bangwei is a semi-wild or transient landrace occupying a phylogenetic position between those wild and cultivated tea plants. Cultivated accessions exhibited greater heterozygosity than wild accessions, with the exception of C. taliensis var. bangwei. Thirteen genes with non-synonymous SNPs exhibited strong selective signals that were suggestive of putative artificial selective footprints for tea plants during domestication. The genome-wide SNPs provide a fundamental data resource for assessing genetic relationships, characterizing complex traits, comparing heterozygosity and analyzing putatitve artificial selection in tea plants.
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- 2016
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13. Bacillus licheniformis Contains Two More PerR-Like Proteins in Addition to PerR, Fur, and Zur Orthologues.
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Jung-Hoon Kim, Chang-Jun Ji, Shin-Yeong Ju, Yoon-Mo Yang, Su-Hyun Ryu, Yumi Kwon, Young-Bin Won, Yeh-Eun Lee, Hwan Youn, and Jin-Won Lee
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Medicine ,Science - Abstract
The ferric uptake regulator (Fur) family proteins include sensors of Fe (Fur), Zn (Zur), and peroxide (PerR). Among Fur family proteins, Fur and Zur are ubiquitous in most prokaryotic organisms, whereas PerR exists mainly in Gram positive bacteria as a functional homologue of OxyR. Gram positive bacteria such as Bacillus subtilis, Listeria monocytogenes and Staphylococcus aureus encode three Fur family proteins: Fur, Zur, and PerR. In this study, we identified five Fur family proteins from B. licheniformis: two novel PerR-like proteins (BL00690 and BL00950) in addition to Fur (BL05249), Zur (BL03703), and PerR (BL00075) homologues. Our data indicate that all of the five B. licheniformis Fur homologues contain a structural Zn2+ site composed of four cysteine residues like many other Fur family proteins. Furthermore, we provide evidence that the PerR-like proteins (BL00690 and BL00950) as well as PerRBL (BL00075), but not FurBL (BL05249) and ZurBL (BL03703), can sense H2O2 by histidine oxidation with different sensitivity. We also show that PerR2 (BL00690) has a PerR-like repressor activity for PerR-regulated genes in vivo. Taken together, our results suggest that B. licheniformis contains three PerR subfamily proteins which can sense H2O2 by histidine oxidation not by cysteine oxidation, in addition to Fur and Zur.
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- 2016
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14. Ultrasonic Elastography Research Based on a Multicenter Study: Adding Strain Ratio after 5-Point Scoring Evaluation or Not.
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Wen-Jie Mu, Wen-Jing Zhong, Ji-Yi Yao, Lu-Jing Li, Yu-Lan Peng, Yi Wang, Li-Sha Liu, Ying Xiao, Shou-Jun Liu, Chang-Jun Wu, Yu-Xin Jiang, Shyam Sundar Parajuly, Ping Xu, Yi Hao, Jing Li, Bao-Ming Luo, and Hui Zhi
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Medicine ,Science - Abstract
This study aimed to confirm whether strain ratio should be added after evaluation of lesions with 5-point elasticity scoring for differentiating benign and malignant breast lesions on ultrasonographic elastography(UE).From June 2010 to March 2012, 1080 consecutive female patients with breast lesions were recruited into a multicenter retrospective study, which involved 8 centers across China. Each institutional ethic review board approved the study, and all the patients gave written informed consent. All the patients underwent the UE procedure and the strain ratios were calculated and the final diagnosis was made by histological findings. The sensitivity, specificity, accuracy, PPV and NPV were calculated for each of the two evaluation systems and the areas under the ROC curve were compared.The strain ratios of benign lesions (mean, 2.6±2.0) and malignant lesions (mean,7.9±5.8) were significantly different (p 0.05). The strain ratio method shows better a diagnosis performance of the lesions with elasticity score 3 and 4.Although the two UE methods have similar diagnostic performance, separate calculation of the strain ratios seems compulsory, especially for the large solid breast lesions and the lesions with elasticity score 3 and 4.
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- 2016
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15. Prognostic role of microRNA-221 in various human malignant neoplasms: a meta-analysis of 20 related studies.
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Jie Yang, Jia-yi Zhang, Jing Chen, Yang Xu, Ning-hong Song, and Chang-jun Yin
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Medicine ,Science - Abstract
BACKGROUND: MicroRNA-221 (miR-221) has been shown to play an important role in cancer prognosis. In order to evaluate the predictive value of miR-221, we compiled the evidence from 20 eligible studies to perform a meta-analysis. DESIGN: All of relevant studies were identified by searching PubMed, Embase, and Web of Science, and were assessed by further quality evaluation. Pooled hazard ratios (HRs) with 95% confidence intervals (CIs) of total and stratified analyses, for overall survival (OS) and recurrence-free survival (RFS), were calculated to investigate the association between high miR-221 expression and cancer prognosis. RESULTS: We found that high miR-221 expression can predict a poor OS in malignant tumors (pooled HR = 1.55, P = 0.017) but has no significant association with RFS (pooled HR = 1.02, P = 0.942). Further in stratified analyses, high miR-221 expression was significantly associated with a poor OS in Asians (pooled HR = 2.04, P = 0.010) or serum/ plasma subgroup (pooled HR = 2.28, P
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- 2014
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16. Epidemiological and clinical characteristics and risk factors for death of patients with avian influenza A H7N9 virus infection from Jiangsu Province, Eastern China.
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Hong Ji, Qin Gu, Li-Ling Chen, Ke Xu, Xia Ling, Chang-Jun Bao, Fen-Yang Tang, Xian Qi, Ying-Qiu Wu, Jing Ai, Gu-Yu Shen, Dan-Jiang Dong, Hui-Yan Yu, Mao Huang, Quan Cao, Ying Xu, Wei Zhao, Yang-Ting Xu, Yu Xia, Shan-Hui Chen, Gen-Lin Yang, Cai-Ling Gu, Guo-Xiang Xie, Ye-Fei Zhu, Feng-Cai Zhu, and Ming-Hao Zhou
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Medicine ,Science - Abstract
BACKGROUND: A novel avian influenza A (H7N9) virus has caused great morbidity as well as mortality since its emergence in Eastern China in February 2013. However, the possible risk factors for death are not yet fully known. METHODS AND FINDINGS: Patients with H7N9 virus infection between March 1 and August 14, 2013 in Jiangsu province were enrolled. Data were collected with a standard form. Mean or percentage was used to describe the features, and Fisher's exact test or t-test test was used to compare the differences between fatal and nonfatal cases with H7N9 virus infection. A total of 28 patients with H7N9 virus infection were identified among whom, nine (32.1%) died. The median age of fatal cases was significant higher than nonfatal cases (P
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- 2014
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17. Decoy oligonucleotide rescues IGF1R expression from MicroRNA-223 suppression.
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Li Hui Wu, Qian Qian Cai, Yi Wei Dong, Rong Wang, Bao Mei He, Bing Qi, Chang Jun Xu, and Xing Zhong Wu
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Medicine ,Science - Abstract
A mature miRNA generally suppresses hundreds of mRNA targets. To evaluate the selective effect of synthetic oligonucleotide decoys on hsa-miR-223 activity, reporters containing 3' untranslated regions (UTR) of IGF1R, FOXO1, POLR3G, FOXO3, CDC27, FBXW7 and PAXIP1 mRNAs were constructed for the luciferase assay. The oligonucleotide decoys were designed and synthesized according to mature miR-223 sequence and its target mRNA sequence. Quantitative RT-PCR & western analysis were used to measure miR-223-targeted mRNA expression, Interestingly, apart from the antisense oligonucleotide, decoy nucleotides which were complementary to the 5', central or 3' region of mature miR-223 suppressed miR-223 targeting the 3'UTR of IGF1R, FOXO1, FOXO3, CDC27, POLR3G, and FBXW7 mRNAs and rescued the expression of these genes to varying degrees from miR-223 suppression at both mRNA and protein levels. All decoys had no effect on PAXIP1 which was not targeted by miR-223. The decoy 1 that was based on the sequence of IGF1R 3'UTR rescued the expression of IGF1R more significantly than other decoy nucleotides except the antisense decoy 4. Decoy 1 also rescued the expression of FOXO3 and POLR3G of which their 3'UTRs have similar binding sites for miR-223 with IGF1R 3'UTR. However decoy 1 failed to recover Sp1, CDC27 and FBXW7 expression. These data support that the sequence-specific decoy oligonucleotides might represent exogenous competing RNA which selectively inhibits microRNA targeting.
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- 2013
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18. Investigation of tumor suppressing function of CACNA2D3 in esophageal squamous cell carcinoma.
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Yan Li, Cai-Lei Zhu, Chang-Jun Nie, Jiang-Chao Li, Ting-ting Zeng, Jie Zhou, Jinna Chen, Kai Chen, Li Fu, Haibo Liu, Yanru Qin, and Xin-Yuan Guan
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Medicine ,Science - Abstract
BACKGROUND:Deletion of 3p is one of the most frequent genetic alterations in esophageal squamous cell carcinoma (ESCC), suggesting the existence of one or more tumor suppressor genes (TSGs) within these regions. In this study, one TSG, CACNA2D3 at 3p21.1, was characterized. METHODS:Expression of CACNA2D3 in ESCCs was tested by quantitative real-time PCR and tissue microarray. The mechanism of CACNA2D3 downregulation was investigated by methylation-specific polymerase chain reaction (MS-PCR). The tumor suppressive function of CACNA2D3 was characterized by both in vitro and in vivo tumorigenic assays, cell migration and invasion assays. RESULTS:CACNA2D3 was frequently downregulated in ESCCs (24/48, 50%), which was significantly associated with promoter methylation and allele loss (P
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- 2013
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19. Fate of antibiotic resistant E. coli and antibiotic resistance genes during full scale conventional and advanced anaerobic digestion of sewage sludge
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Redhead, Sky, primary, Nieuwland, Jeroen, additional, Esteves, Sandra, additional, Lee, Do-Hoon, additional, Kim, Dae-Wi, additional, Mathias, Jordan, additional, Cha, Chang-Jun, additional, Toleman, Mark, additional, Dinsdale, Richard, additional, Guwy, Alan, additional, and Hayhurst, Emma, additional
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- 2020
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20. Fate of antibiotic resistant E. coli and antibiotic resistance genes during full scale conventional and advanced anaerobic digestion of sewage sludge
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Jordan Mathias, Richard M. Dinsdale, Alan J. Guwy, Dae-Wi Kim, Do-Hoon Lee, Chang-Jun Cha, Mark Toleman, Sky Redhead, Jeroen Nieuwland, Emma Hayhurst, and Sandra Esteves
- Subjects
Epidemiology ,0208 environmental biotechnology ,Sewage ,Social Sciences ,Genes, MHC Class I ,Artificial Gene Amplification and Extension ,02 engineering and technology ,010501 environmental sciences ,Wastewater ,Integron ,01 natural sciences ,Sludge ,Polymerase Chain Reaction ,Integrons ,Antibiotics ,Land Use ,Medicine and Health Sciences ,Anaerobiosis ,Materials ,Multidisciplinary ,Geography ,Antimicrobials ,Hydrolysis ,Drugs ,Terrestrial Environments ,Anti-Bacterial Agents ,Physical Sciences ,Engineering and Technology ,Medicine ,Sewage treatment ,Macrolides ,Research Article ,Science ,Materials Science ,Solid Waste Management ,Biology ,Human Geography ,Research and Analysis Methods ,Microbiology ,Antibiotic resistance ,Microbial Control ,Drug Resistance, Bacterial ,Escherichia coli ,Humans ,Molecular Biology Techniques ,Molecular Biology ,0105 earth and related environmental sciences ,Pharmacology ,business.industry ,Sewage Treatment ,Ecology and Environmental Sciences ,Biology and Life Sciences ,Agricultural Land ,020801 environmental engineering ,Interspersed Repetitive Sequences ,Anaerobic digestion ,Genes, Bacterial ,Antibiotic Resistance ,Medical Risk Factors ,biology.protein ,Earth Sciences ,Sewage sludge treatment ,Antimicrobial Resistance ,Sanitary Engineering ,Mobile genetic elements ,business - Abstract
Antibiotic resistant bacteria (ARB) and their genes (ARGs) have become recognised as significant emerging environmental pollutants. ARB and ARGs in sewage sludge can be transmitted back to humans via the food chain when sludge is recycled to agricultural land, making sludge treatment key to control the release of ARB and ARGs to the environment. This study investigated the fate of antibiotic resistant Escherichia coli and a large set of antibiotic resistance genes (ARGs) during full scale anaerobic digestion (AD) of sewage sludge at two U.K. wastewater treatment plants and evaluated the impact of thermal hydrolysis (TH) pre-treatment on their abundance and diversity. Absolute abundance of 13 ARGs and the Class I integron gene intI1 was calculated using single gene quantitative (q) PCR. High through-put qPCR analysis was also used to determine the relative abundance of 370 ARGs and mobile genetic elements (MGEs). Results revealed that TH reduced the absolute abundance of all ARGs tested and intI1 by 10–12,000 fold. After subsequent AD, a rebound effect was seen in many ARGs. The fate of ARGs during AD without pre-treatment was variable. Relative abundance of most ARGs and MGEs decreased or fluctuated, with the exception of macrolide resistance genes, which were enriched at both plants, and tetracyline and glycopeptide resistance genes which were enriched in the plant employing TH. Diversity of ARGs and MGEs decreased in both plants during sludge treatment. Principal coordinates analysis revealed that ARGs are clearly distinguished according to treatment step, whereas MGEs in digested sludge cluster according to site. This study provides a comprehensive within-digestor analysis of the fate of ARGs, MGEs and antibiotic resistant E. coli and highlights the effectiveness of AD, particularly when TH is used as a pre-treatment, at reducing the abundance of most ARGs and MGEs in sludgeand preventing their release into the environment.
- Published
- 2020
21. A novel viral SOCS from infectious spleen and kidney necrosis virus: interacts with Jak1 and inhibits IFN-α induced Stat1/3 activation.
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Chang-Jun Guo, Li-Shi Yang, Ying-Fen Zhang, Yan-Yan Wu, Shao-Ping Weng, Xiao-Qiang Yu, and Jian-Guo He
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Medicine ,Science - Abstract
Interferon (IFN)-induced Janus kinase (Jak)/signal transducer and activator of transcription (Stat) pathway is important in controlling immune responses and is negatively response-regulated by the suppressor of cytokine signaling (SOCS) proteins. However, several viruses have developed various strategies to inhibit this pathway to circumvent the anti-viral immunity of the host. The infectious spleen and kidney necrosis virus (ISKNV) is the type species of the genus Megalocytivirus in the family Iridoviridae and a causative agent of epizootics in fish. ISKNV ORF103R encodes a predicted viral SOCS (vSOCS) with high homology to the vertebrate SOCS1, but lacks a SOCS-box domain. Interestingly, vSOCS only exists in the genus Megalocytivirus. ISKNV-vSOCS can block the IFN-α-induced Jak/Stat pathway in HepG2 cells. Over-expression of ISKNV-vSOCS inhibited the activities of IFN-stimulated response element (ISRE) promoter; however, the inhibitions by ISKNV-vSOCS were dose-dependent. ISKNV-vSOCS interacted with Jak1 protein and inhibited its tyrosine kinase activity in vitro. ISKNV-vSOCS also impaired the phosphorylation of Stat1 and Stat3 proteins and suppressed their activations. The point mutations (F18D, S66A, S85A, and R64K) of ISKNV-vSOCS significantly impaired the inhibition of IFN-α-induced ISRE-promoter activation. In conclusion, vSOCS inhibits IFN-α-induced Stat1/Stat3 signaling, suggesting that Megalocytivirus has developed a novel strategy to evade IFN anti-viral immunity via vSOCS protein.
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- 2012
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22. miR-511 and miR-1297 inhibit human lung adenocarcinoma cell proliferation by targeting oncogene TRIB2.
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Chao Zhang, Yong Liang Chi, Ping Yu Wang, Ya Qi Wang, Yan Xia Zhang, Jingti Deng, Chang Jun Lv, and Shu Yang Xie
- Subjects
Medicine ,Science - Abstract
microRNAs (miRNAs) are small noncoding RNAs that regulate genes and contribute to many kinds of human diseases, including cancer. Two miRNAs, miR-511 and miR-1297, were investigated for a possible role in adenocarcinoma based on predicted binding sites for the TRIB2 oncogene by microRNA analysis software, and the pcDNA-GFP-TRIB2-3'UTR vector was constructed to investigate the interaction between TRIB2 and miR-511/1297 in the adenocarcinoma cell line A549. Green fluorescent protein (GFP) expression was estimated by fluorescence microscopy and flow cytometry after A549 cells were co-transfected with miR-511 (or miR-1297) and pcDNA-GFP-TRIB2-3'UTR vector. The expression of GFP in the miR-511- and miR-1297-treated cells was significantly downregulated in contrast with the negative-control (NC) miRNA-treated cells. The decreased expression of TRIB2 was further detected after miR-511 (or miR-1297) treatment by western blotting. The MTT test showed inhibition of A549 cell proliferation and Annexin V-FITC/PI dual staining showed increased apoptosis in the miR-511- and miR-1297-treated cells compared to the NC cultures. A transcription factor downstream of TRIB2, the CCAAT/enhancer-binding protein alpha (C/EBPα), was expression at higher levels after miR-511 (or miR-1297) decreasing TRIB2 expression. Our results illustrate that miR-511 and miR-1297 act as tumor suppressor genes, which could suppress A549 cell proliferation in vitro and in vivo by suppressing TRIB2 and further increasing C/EBPα expression.
- Published
- 2012
- Full Text
- View/download PDF
23. Activation of PI3K/AKT and MAPK pathway through a PDGFRβ-dependent feedback loop is involved in rapamycin resistance in hepatocellular carcinoma.
- Author
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Quan-Lin Li, Fang-Ming Gu, Zheng Wang, Jia-Hao Jiang, Li-Qing Yao, Chang-Jun Tan, Xiao-Yong Huang, Ai-Wu Ke, Zhi Dai, Jia Fan, and Jian Zhou
- Subjects
Medicine ,Science - Abstract
Rapamycin is an attractive approach for the treatment and prevention of HCC recurrence after liver transplantation. However, the objective response rates of rapamycin achieved with single-agent therapy were modest, supporting that rapamycin resistance is a frequently observed characteristic of many cancers. Some studies have been devoted to understanding the mechanisms of rapamycin resistance, however, the mechanisms are cell-type-dependent and studies on rapamycin resistance in HCC are extremely limited.The anti-tumor sensitivity of rapamycin was modest in vitro and in vivo. In both human and rat HCC cells, rapamycin up-regulated the expression and phosphorylation of PDGFRβ in a time and dose-dependent manner as assessed by RT-PCR and western blot analysis. Using siRNA mediated knockdown of PDGFRβ, we confirmed that subsequent activation of AKT and ERK was PDGFRβ-dependent and compromised the anti-tumor activity of rapamycin. Then, blockade of this PDGFRβ-dependent feedback loop by sorafenib enhanced the anti-tumor sensitivity of rapamycin in vitro and in an immunocompetent orthotopic rat model of HCC.Activation of PI3K/AKT and MAPK pathway through a PDGFRβ-dependent feedback loop compromises the anti-tumor activity of rapamycin in HCC, and blockade of this feedback loop by sorafenib is an attractive approach to improve the anti-tumor effect of rapamycin, particularly in preventing or treating HCC recurrence after liver transplantation.
- Published
- 2012
- Full Text
- View/download PDF
24. Spinal astrocytic activation is involved in a virally-induced rat model of neuropathic pain.
- Author
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Gui-He Zhang, Miao-Miao Lv, Shuang Wang, Lei Chen, Nian-Song Qian, Yu Tang, Xu-Dong Zhang, Peng-Cheng Ren, Chang-Jun Gao, Xu-De Sun, and Li-Xian Xu
- Subjects
Medicine ,Science - Abstract
Postherpetic neuralgia (PHN), the most common complication of herpes zoster (HZ), plays a major role in decreased life quality of HZ patients. However, the neural mechanisms underlying PHN remain unclear. Here, using a PHN rat model at 2 weeks after varicella zoster virus infection, we found that spinal astrocytes were dramatically activated. The mechanical allodynia and spinal central sensitization were significantly attenuated by intrathecally injected L-α-aminoadipate (astrocytic specific inhibitor) whereas minocycline (microglial specific inhibitor) had no effect, which indicated that spinal astrocyte but not microglia contributed to the chronic pain in PHN rat. Further study was taken to investigate the molecular mechanism of astrocyte-incudced allodynia in PHN rat at post-infection 2 weeks. Results showed that nitric oxide (NO) produced by inducible nitric oxide synthase mediated the development of spinal astrocytic activation, and activated astrocytes dramatically increased interleukin-1β expression which induced N-methyl-D-aspartic acid receptor (NMDAR) phosphorylation in spinal dorsal horn neurons to strengthen pain transmission. Taken together, these results suggest that spinal activated astrocytes may be one of the most important factors in the pathophysiology of PHN and "NO-Astrocyte-Cytokine-NMDAR-Neuron" pathway may be the detailed neural mechanisms underlying PHN. Thus, inhibiting spinal astrocytic activation may represent a novel therapeutic strategy for clinical management of PHN.
- Published
- 2011
- Full Text
- View/download PDF
25. Giant panda genomic data provide insight into the birth-and-death process of mammalian major histocompatibility complex class II genes.
- Author
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Qiu-Hong Wan, Chang-Jun Zeng, Xiao-Wei Ni, Hui-Juan Pan, and Sheng-Guo Fang
- Subjects
Medicine ,Science - Abstract
To gain an understanding of the genomic structure and evolutionary history of the giant panda major histocompatibility complex (MHC) genes, we determined a 636,503-bp nucleotide sequence spanning the MHC class II region. Analysis revealed that the MHC class II region from this rare species contained 26 loci (17 predicted to be expressed), of which 10 are classical class II genes (1 DRA, 2 DRB, 2 DQA, 3 DQB, 1 DYB, 1 DPA, and 2 DPB) and 4 are non-classical class II genes (1 DOA, 1 DOB, 1 DMA, and 1 DMB). The presence of DYB, a gene specific to ruminants, prompted a comparison of the giant panda class II sequence with those of humans, cats, dogs, cattle, pigs, and mice. The results indicated that birth and death events within the DQ and DRB-DY regions led to major lineage differences, with absence of these regions in the cat and in humans and mice respectively. The phylogenetic trees constructed using all expressed alpha and beta genes from marsupials and placental mammals showed that: (1) because marsupials carry loci corresponding to DR, DP, DO and DM genes, those subregions most likely developed before the divergence of marsupials and placental mammals, approximately 150 million years ago (MYA); (2) conversely, the DQ and DY regions must have evolved later, but before the radiation of placental mammals (100 MYA). As a result, the typical genomic structure of MHC class II genes for the giant panda is similar to that of the other placental mammals and corresponds to BTNL2 approximately DR1 approximately DQ approximately DR2 approximately DY approximately DO_box approximately DP approximately COL11A2. Over the past 100 million years, there has been birth and death of mammalian DR, DQ, DY, and DP genes, an evolutionary process that has brought about the current species-specific genomic structure of the MHC class II region. Furthermore, facing certain similar pathogens, mammals have adopted intra-subregion (DR and DQ) and inter-subregion (between DQ and DP) convergent evolutionary strategies for their alpha and beta genes, respectively.
- Published
- 2009
- Full Text
- View/download PDF
26. Superior immune responses induced by intranasal immunization with recombinant adenovirus-based vaccine expressing full-length Spike protein of Middle East respiratory syndrome coronavirus
- Author
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Kim, Myung Hee, primary, Kim, Hyun Jik, additional, and Chang, Jun, additional
- Published
- 2019
- Full Text
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27. Comparative analysis of the response and gene regulation in cold resistant and susceptible tea plants
- Author
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Lei Kong, Chang-Jun Jiang, Qiuyan Ban, Yiqun Xu, Wenzhi Wang, Yuting Pan, Yiwei Wang, Huiguang Jiang, Yeyun Li, Cheng Pan, and Xuewen Wang
- Subjects
0106 biological sciences ,0301 basic medicine ,Leaves ,Gene Expression ,lcsh:Medicine ,Plant Science ,01 natural sciences ,Biochemistry ,chemistry.chemical_compound ,Gene Expression Regulation, Plant ,Plant Resistance to Abiotic Stress ,Gene expression ,Medicine and Health Sciences ,Camellia sinensis ,Cultivar ,Raffinose ,Amino Acids ,lcsh:Science ,Regulation of gene expression ,Multidisciplinary ,Ecology ,Organic Compounds ,Plant Anatomy ,Physics ,Plant physiology ,Classical Mechanics ,food and beverages ,Adaptation, Physiological ,Cold Temperature ,Horticulture ,Chemistry ,Plant Physiology ,Physical Sciences ,Mechanical Stress ,Research Article ,Proline ,Biology ,Genes, Plant ,Beverages ,03 medical and health sciences ,Plant-Environment Interactions ,Cold acclimation ,Genetics ,Plant Defenses ,Gene Regulation ,Gene ,Nutrition ,Tea ,Plant Ecology ,Organic Chemistry ,Ecology and Environmental Sciences ,lcsh:R ,Chemical Compounds ,Biology and Life Sciences ,Proteins ,Cyclic Amino Acids ,Plant Pathology ,Diet ,030104 developmental biology ,Thermal Stresses ,chemistry ,lcsh:Q ,010606 plant biology & botany - Abstract
Cold environment is the main constraint for tea plants (Camellia sinensis) distribution and tea farming. We identified two tea cultivars, called var. sinensis cv. Shuchazao (SCZ) with a high cold-tolerance and var. assamica cv. Yinghong9 (YH9) with low cold-tolerance. To better understand the response mechanism of tea plants under cold stress for improving breeding, we compared physiological and biochemical responses, and associated genes expression in response to 7-day and 14-day cold acclimation, followed by 7-day de-acclimation in these two tea cultivars. We found that the low EL50, low Fv/Fm, and high sucrose and raffinose accumulation are responsible for higher cold tolerance in SCZ comparing with YH9. We then measured the expression of 14 key homologous genes, known as involved in these responses in other plants, for each stages of treatment in both cultivars using RT-qPCR. Our results suggested that the increased expression of CsCBF1 and CsDHNs coupling with the accumulation of sucrose play key roles in conferring higher cold resistance in SCZ. Our findings have revealed key genes regulation responsible for cold resistance, which help to understand the cold-resistant mechanisms and guide breeding in tea plants.
- Published
- 2017
28. Genome-wide analysis of day/night DNA methylation differences in Populus nigra
- Author
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Ding, Chang-Jun, primary, Liang, Li-Xiong, additional, Diao, Shu, additional, Su, Xiao-Hua, additional, and Zhang, Bing-Yu, additional
- Published
- 2018
- Full Text
- View/download PDF
29. Outbreaks of acute gastroenteritis associated with a re-emerging GII.P16-GII.2 norovirus in the spring of 2017 in Jiangsu, China
- Author
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Fu, Jian-Guang, primary, Shi, Chao, additional, Xu, Cheng, additional, Lin, Qin, additional, Zhang, Jun, additional, Yi, Qian-Hua, additional, Bao, Chang-Jun, additional, Huo, Xiang, additional, Zhu, Ye-Fei, additional, Ai, Jing, additional, and Xing, Zheng, additional
- Published
- 2017
- Full Text
- View/download PDF
30. Does preoperative mechanical prophylaxis have additional effectiveness in preventing postoperative venous thromboembolism in elderly patients with hip fracture?—Retrospective case-control study
- Author
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Nam, Ji-Hoon, primary, Kim, Dae-Hwan, additional, Yoo, Je-Hyun, additional, Hwang, Ji-Hyo, additional, and Chang, Jun-Dong, additional
- Published
- 2017
- Full Text
- View/download PDF
31. Effect of statin on progression of symptomatic basilar artery stenosis and subsequent ischemic stroke
- Author
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Yum, Kyu Sun, primary, Chang, Jun Young, additional, Jeong, Won Joo, additional, Lee, Sangkil, additional, Jeong, Jin-Heon, additional, Yeo, Min-Ju, additional, Hong, Jeong-Ho, additional, Park, Hong-Kyun, additional, Chung, Inyoung, additional, Kim, Beom Joon, additional, Bang, Jae Seung, additional, Bae, Hee-Joon, additional, and Han, Moon-Ku, additional
- Published
- 2017
- Full Text
- View/download PDF
32. Bacillus licheniformis Contains Two More PerR-Like Proteins in Addition to PerR, Fur, and Zur Orthologues
- Author
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Yoon-Mo Yang, Yeh-Eun Lee, Junghoon Kim, Chang-Jun Ji, Yumi Kwon, Young-Bin Won, Jin-Won Lee, Su-Hyun Ryu, Hwan Youn, and Shinyeong Ju
- Subjects
0301 basic medicine ,Subfamily ,lcsh:Medicine ,Bacillus ,Bacillus subtilis ,Plant Science ,Pathology and Laboratory Medicine ,Biochemistry ,Mass Spectrometry ,Analytical Chemistry ,Cell Fusion ,Spectrum Analysis Techniques ,Tandem Mass Spectrometry ,Medicine and Health Sciences ,Bacillus licheniformis ,lcsh:Science ,Peptide sequence ,Multidisciplinary ,integumentary system ,Chemical Reactions ,Bacterial Pathogens ,Bacillus Subtilis ,Chemistry ,Zinc ,Medical Microbiology ,Lichenology ,Multigene Family ,Physical Sciences ,Prokaryotic Models ,Pathogens ,Oxidation-Reduction ,Research Article ,inorganic chemicals ,Cell Physiology ,Repressor ,Biology ,Research and Analysis Methods ,DNA-binding protein ,Microbiology ,03 medical and health sciences ,Model Organisms ,Bacterial Proteins ,Gene Types ,Oxidation ,DNA-binding proteins ,Genetics ,Amino Acid Sequence ,Microbial Pathogens ,Histidine ,Bacteria ,Sequence Homology, Amino Acid ,lcsh:R ,Organisms ,Biology and Life Sciences ,Proteins ,Molecular Sequence Annotation ,Cell Biology ,Hydrogen Peroxide ,biology.organism_classification ,Repressor Proteins ,030104 developmental biology ,bacteria ,Regulator Genes ,lcsh:Q ,Peptides ,Cysteine - Abstract
The ferric uptake regulator (Fur) family proteins include sensors of Fe (Fur), Zn (Zur), and peroxide (PerR). Among Fur family proteins, Fur and Zur are ubiquitous in most prokaryotic organisms, whereas PerR exists mainly in Gram positive bacteria as a functional homologue of OxyR. Gram positive bacteria such as Bacillus subtilis, Listeria monocytogenes and Staphylococcus aureus encode three Fur family proteins: Fur, Zur, and PerR. In this study, we identified five Fur family proteins from B. licheniformis: two novel PerR-like proteins (BL00690 and BL00950) in addition to Fur (BL05249), Zur (BL03703), and PerR (BL00075) homologues. Our data indicate that all of the five B. licheniformis Fur homologues contain a structural Zn2+ site composed of four cysteine residues like many other Fur family proteins. Furthermore, we provide evidence that the PerR-like proteins (BL00690 and BL00950) as well as PerRBL (BL00075), but not FurBL (BL05249) and ZurBL (BL03703), can sense H2O2 by histidine oxidation with different sensitivity. We also show that PerR2 (BL00690) has a PerR-like repressor activity for PerR-regulated genes in vivo. Taken together, our results suggest that B. licheniformis contains three PerR subfamily proteins which can sense H2O2 by histidine oxidation not by cysteine oxidation, in addition to Fur and Zur.
- Published
- 2016
33. Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing
- Author
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Chaoling Wei, Zheng-Guo Li, Liang Zhang, Jing Zhang, Jianbo Jian, Yeyun Li, Chang-Jun Jiang, Hua Yang, Tao Xia, Xiaochun Wan, Yuling Tai, Zhengzhu Zhang, Hong-Wei Liu, and Junlan Wu
- Subjects
Metabolic Processes ,0301 basic medicine ,Heredity ,Molecular biology ,lcsh:Medicine ,Plant Science ,Plant Genetics ,Biochemistry ,Camellia sinensis ,DNA library construction ,Medicine and Health Sciences ,Plant Genomics ,lcsh:Science ,Data Management ,Genetics ,Heterozygosity ,Multidisciplinary ,Phylogenetic tree ,Gene Ontologies ,High-Throughput Nucleotide Sequencing ,food and beverages ,Genomics ,Genomic Library Construction ,Phylogenetics ,Research Article ,Biotechnology ,Computer and Information Sciences ,DNA construction ,Biology ,Genes, Plant ,Polymorphism, Single Nucleotide ,DNA sequencing ,Beverages ,03 medical and health sciences ,Genetic drift ,Evolutionary Systematics ,Domestication ,Nutrition ,Taxonomy ,Evolutionary Biology ,Tea ,lcsh:R ,Biology and Life Sciences ,Computational Biology ,Genome Analysis ,Diet ,Research and analysis methods ,Genetic divergence ,Metabolism ,Molecular biology techniques ,030104 developmental biology ,Genetic Loci ,Genetic marker ,Plant Biotechnology ,lcsh:Q ,Genome-Wide Association Study - Abstract
Tea is one of the most popular beverages across the world and is made exclusively from cultivars of Camellia sinensis. Many wild relatives of the genus Camellia that are closely related to C. sinensis are native to Southwest China. In this study, we first identified the distinct genetic divergence between C. sinensis and its wild relatives and provided a glimpse into the artificial selection of tea plants at a genome-wide level by analyzing 15,444 genomic SNPs that were identified from 18 cultivated and wild tea accessions using a high-throughput genome-wide restriction site-associated DNA sequencing (RAD-Seq) approach. Six distinct clusters were detected by phylogeny inferrence and principal component and genetic structural analyses, and these clusters corresponded to six Camellia species/varieties. Genetic divergence apparently indicated that C. taliensis var. bangwei is a semi-wild or transient landrace occupying a phylogenetic position between those wild and cultivated tea plants. Cultivated accessions exhibited greater heterozygosity than wild accessions, with the exception of C. taliensis var. bangwei. Thirteen genes with non-synonymous SNPs exhibited strong selective signals that were suggestive of putative artificial selective footprints for tea plants during domestication. The genome-wide SNPs provide a fundamental data resource for assessing genetic relationships, characterizing complex traits, comparing heterozygosity and analyzing putatitve artificial selection in tea plants.
- Published
- 2016
34. Outbreaks of acute gastroenteritis associated with a re-emerging GII.P16-GII.2 norovirus in the spring of 2017 in Jiangsu, China
- Author
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Jing Ai, Jun Zhang, Jian Guang Fu, Cheng Xu, Chang Jun Bao, Qin Lin, Qian Hua Yi, Yefei Zhu, Xiang Huo, Zheng Xing, and Chao Shi
- Subjects
RNA viruses ,0301 basic medicine ,Genes, Viral ,viruses ,lcsh:Medicine ,Pathology and Laboratory Medicine ,medicine.disease_cause ,Disease Outbreaks ,Geographical Locations ,Database and Informatics Methods ,fluids and secretions ,Japan ,Medicine and Health Sciences ,lcsh:Science ,Phylogeny ,Data Management ,Caliciviridae Infections ,Multidisciplinary ,virus diseases ,Phylogenetic Analysis ,Gastroenteritis ,Phylogenetics ,Capsid ,Medical Microbiology ,Viral Pathogens ,Viruses ,Acute Disease ,Pathogens ,Sequence Analysis ,Research Article ,Computer and Information Sciences ,China ,Asia ,Bioinformatics ,Sequence analysis ,Gastroenterology and Hepatology ,Biology ,Research and Analysis Methods ,Microbiology ,Caliciviruses ,Viral Proteins ,03 medical and health sciences ,Sequence Motif Analysis ,medicine ,Humans ,Evolutionary Systematics ,Microbial Pathogens ,Taxonomy ,Evolutionary Biology ,Norovirus ,lcsh:R ,Organisms ,Biology and Life Sciences ,Outbreak ,Acute gastroenteritis ,Virology ,030104 developmental biology ,People and Places ,lcsh:Q ,Sequence Alignment - Abstract
A total of 64 acute gastroenteritis outbreaks with 2,953 patients starting in December of 2016 and occurring mostly in the late spring of 2017 were reported in Jiangsu, China. A recombinant GII.P16-GII.2 norovirus variant was associated with 47 outbreaks (73.4%) for the gastroenteritis epidemic, predominantly occurring in February and March of 2017. Sequence analysis of the RNA-dependent RNA polymerase (RdRp) and capsid protein of the viral isolates from these outbreaks confirmed that this GII.P16-GII.2 strain was the GII.P16-GII.2 variant with the intergenotypic recombination, identified in Taiwan, Hong Kong, and other cities in China in 2016. This GII.P16-GII.2 recombinant variant appeared to a re-emerging strain, firstly identified in 2011-2012 from Japan and USA but might be independently originated from other GII.P16-GII.2 variants for sporadic and outbreaks of gastroenteritis in Japan and China before 2016. Further identification of unique amino acid mutations in both VP1 and RdRp of NoV strain as shown in this report may provide insight in explaining its structural and antigenic changes, potentially critical for the variant recombinant to gain its predominance in causing regional and worldwide epidemics.
- Published
- 2017
35. Retinal artery occlusion and associated recurrent vascular risk with underlying etiologies
- Author
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Hong, Jeong-Ho, primary, Sohn, Sung-Il, additional, Kwak, Jaehyuk, additional, Yoo, Joonsang, additional, Ahn, Seong Joon, additional, Woo, Se Joon, additional, Jung, Cheolkyu, additional, Yum, Kyu Sun, additional, Bae, Hee-Joon, additional, Chang, Jun Young, additional, Jung, Jin-Heon, additional, Lee, Ji Sung, additional, and Han, Moon-Ku, additional
- Published
- 2017
- Full Text
- View/download PDF
36. Universal vaccine against respiratory syncytial virus A and B subtypes
- Author
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Lee, Jeong-Yoon, primary and Chang, Jun, additional
- Published
- 2017
- Full Text
- View/download PDF
37. Major vessel occlusion may predict subtherapeutic anticoagulation intensity and feasibility of administration of intravenous thrombolytics
- Author
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Chang, Jun Young, primary, Jung, Seunguk, additional, Park, Hyun, additional, and Han, Moon-Ku, additional
- Published
- 2017
- Full Text
- View/download PDF
38. Monoclonal Antibody against G Glycoprotein Increases Respiratory Syncytial Virus Clearance In Vivo and Prevents Vaccine-Enhanced Diseases
- Author
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Lee, Hyo-Jeong, primary, Lee, Jeong-Yoon, additional, Park, Min-Hee, additional, Kim, Joo-Young, additional, and Chang, Jun, additional
- Published
- 2017
- Full Text
- View/download PDF
39. Risk Factors for Bunyavirus-Associated Severe Fever with Thrombocytopenia Syndrome: A Community-Based Case-Control Study
- Author
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Hu, Jian-li, primary, Li, Zhi-feng, additional, Wang, Xiao-chen, additional, Hong, Lei, additional, He, Hao, additional, Chen, Wei-guo, additional, Li, Lu-xun, additional, Shen, Ai-hua, additional, Liu, Xue-jian, additional, Yuan, Shou-guo, additional, Zhou, Jian-gang, additional, Tan, Wen-wen, additional, Zhou, Wei-zhong, additional, Tang, Fen-yang, additional, Zhu, Feng-cai, additional, and Bao, Chang-jun, additional
- Published
- 2016
- Full Text
- View/download PDF
40. Cholera Toxin Promotes Th17 Cell Differentiation by Modulating Expression of Polarizing Cytokines and the Antigen-Presenting Potential of Dendritic Cells
- Author
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Kang, Jung-Ok, primary, Lee, Jee-Boong, additional, and Chang, Jun, additional
- Published
- 2016
- Full Text
- View/download PDF
41. Bacillus licheniformis Contains Two More PerR-Like Proteins in Addition to PerR, Fur, and Zur Orthologues
- Author
-
Kim, Jung-Hoon, primary, Ji, Chang-Jun, additional, Ju, Shin-Yeong, additional, Yang, Yoon-Mo, additional, Ryu, Su-Hyun, additional, Kwon, Yumi, additional, Won, Young-Bin, additional, Lee, Yeh-Eun, additional, Youn, Hwan, additional, and Lee, Jin-Won, additional
- Published
- 2016
- Full Text
- View/download PDF
42. Baculovirus Displaying Hemagglutinin Elicits Broad Cross-Protection against Influenza in Mice
- Author
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Sim, Sang-Hee, primary, Kim, Joo Young, additional, Seong, Baik Lin, additional, Nguyen, Huan Huu, additional, and Chang, Jun, additional
- Published
- 2016
- Full Text
- View/download PDF
43. Genetic Divergence between Camellia sinensis and Its Wild Relatives Revealed via Genome-Wide SNPs from RAD Sequencing
- Author
-
Yang, Hua, primary, Wei, Chao-Ling, additional, Liu, Hong-Wei, additional, Wu, Jun-Lan, additional, Li, Zheng-Guo, additional, Zhang, Liang, additional, Jian, Jian-Bo, additional, Li, Ye-Yun, additional, Tai, Yu-Ling, additional, Zhang, Jing, additional, Zhang, Zheng-Zhu, additional, Jiang, Chang-Jun, additional, Xia, Tao, additional, and Wan, Xiao-Chun, additional
- Published
- 2016
- Full Text
- View/download PDF
44. Ultrasonic Elastography Research Based on a Multicenter Study: Adding Strain Ratio after 5-Point Scoring Evaluation or Not
- Author
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Mu, Wen-Jie, primary, Zhong, Wen-Jing, additional, Yao, Ji-Yi, additional, Li, Lu-Jing, additional, Peng, Yu-lan, additional, Wang, Yi, additional, Liu, Li-sha, additional, Xiao, Ying, additional, Liu, Shou-jun, additional, Wu, Chang-jun, additional, Jiang, Yu-xin, additional, Parajuly, Shyam Sundar, additional, Xu, Ping, additional, Hao, Yi, additional, Li, Jing, additional, Luo, Bao-Ming, additional, and Zhi, Hui, additional
- Published
- 2016
- Full Text
- View/download PDF
45. A novel viral SOCS from infectious spleen and kidney necrosis virus: interacts with Jak1 and inhibits IFN-α induced Stat1/3 activation
- Author
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Yan-Yan Wu, Chang-Jun Guo, Ying-Fen Zhang, Xiao-Qiang Yu, Shaoping Weng, Jianguo He, and Li-Shi Yang
- Subjects
Anatomy and Physiology ,lcsh:Medicine ,Suppressor of Cytokine Signaling Proteins ,Signal transduction ,Kidney ,Megalocytivirus ,Mice ,Molecular cell biology ,Genes, Reporter ,Immune Physiology ,STAT1 ,Phosphorylation ,STAT3 ,lcsh:Science ,Multidisciplinary ,biology ,Janus kinase 1 ,Viral Immune Evasion ,JAK-STAT signaling pathway ,Hep G2 Cells ,Antivirals ,STAT Transcription Factors ,STAT1 Transcription Factor ,Trager duck spleen necrosis virus ,Cytokines ,Medicine ,Protein Binding ,Research Article ,STAT3 Transcription Factor ,Molecular Sequence Data ,Immunology ,Signaling in cellular processes ,Microbiology ,Viral Proteins ,Virology ,Animals ,Humans ,Point Mutation ,Amino Acid Sequence ,Biology ,STAT signaling family ,lcsh:R ,Computational Biology ,Interferon-alpha ,Janus Kinase 1 ,biology.organism_classification ,Molecular biology ,Immune System ,Virulence Factors and Mechanisms ,biology.protein ,STAT protein ,Clinical Immunology ,lcsh:Q ,Janus kinase ,Kidney necrosis - Abstract
Interferon (IFN)-induced Janus kinase (Jak)/signal transducer and activator of transcription (Stat) pathway is important in controlling immune responses and is negatively response-regulated by the suppressor of cytokine signaling (SOCS) proteins. However, several viruses have developed various strategies to inhibit this pathway to circumvent the anti-viral immunity of the host. The infectious spleen and kidney necrosis virus (ISKNV) is the type species of the genus Megalocytivirus in the family Iridoviridae and a causative agent of epizootics in fish. ISKNV ORF103R encodes a predicted viral SOCS (vSOCS) with high homology to the vertebrate SOCS1, but lacks a SOCS-box domain. Interestingly, vSOCS only exists in the genus Megalocytivirus. ISKNV-vSOCS can block the IFN-α-induced Jak/Stat pathway in HepG2 cells. Over-expression of ISKNV-vSOCS inhibited the activities of IFN-stimulated response element (ISRE) promoter; however, the inhibitions by ISKNV-vSOCS were dose-dependent. ISKNV-vSOCS interacted with Jak1 protein and inhibited its tyrosine kinase activity in vitro. ISKNV-vSOCS also impaired the phosphorylation of Stat1 and Stat3 proteins and suppressed their activations. The point mutations (F18D, S66A, S85A, and R64K) of ISKNV-vSOCS significantly impaired the inhibition of IFN-α-induced ISRE-promoter activation. In conclusion, vSOCS inhibits IFN-α-induced Stat1/Stat3 signaling, suggesting that Megalocytivirus has developed a novel strategy to evade IFN anti-viral immunity via vSOCS protein.
- Published
- 2012
46. Effects of Hyaluronic Acid and γ–Globulin Concentrations on the Frictional Response of Human Osteoarthritic Articular Cartilage
- Author
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Park, Jae-Yong, primary, Duong, Cong-Truyen, additional, Sharma, Ashish Ranjan, additional, Son, Kyeong-Min, additional, Thompson, Mark S., additional, Park, Sungchan, additional, Chang, Jun-Dong, additional, Nam, Ju-Suk, additional, Park, Seonghun, additional, and Lee, Sang-Soo, additional
- Published
- 2014
- Full Text
- View/download PDF
47. Giant panda genomic data provide insight into the birth-and-death process of mammalian major histocompatibility complex class II genes
- Author
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Chang-Jun Zeng, Sheng-Guo Fang, Xiao-Wei Ni, Qiu-Hong Wan, and Hui-Juan Pan
- Subjects
Sequence analysis ,Pseudogene ,lcsh:Medicine ,Major histocompatibility complex ,MHC Class II Gene ,Evolutionary Biology/Animal Genetics ,Evolution, Molecular ,Mice ,Dogs ,Phylogenetics ,Animals ,Humans ,lcsh:Science ,Gene ,Phylogeny ,Genetics ,Mammals ,MHC class II ,Evolutionary Biology ,Multidisciplinary ,Evolutionary Biology/Animal Behavior ,Genome ,biology ,Phylogenetic tree ,Base Sequence ,Models, Genetic ,lcsh:R ,Histocompatibility Antigens Class II ,Genetic Variation ,biology.protein ,Cats ,Cattle ,lcsh:Q ,Ursidae ,Research Article - Abstract
To gain an understanding of the genomic structure and evolutionary history of the giant panda major histocompatibility complex (MHC) genes, we determined a 636,503-bp nucleotide sequence spanning the MHC class II region. Analysis revealed that the MHC class II region from this rare species contained 26 loci (17 predicted to be expressed), of which 10 are classical class II genes (1 DRA, 2 DRB, 2 DQA, 3 DQB, 1 DYB, 1 DPA, and 2 DPB) and 4 are non-classical class II genes (1 DOA, 1 DOB, 1 DMA, and 1 DMB). The presence of DYB, a gene specific to ruminants, prompted a comparison of the giant panda class II sequence with those of humans, cats, dogs, cattle, pigs, and mice. The results indicated that birth and death events within the DQ and DRB-DY regions led to major lineage differences, with absence of these regions in the cat and in humans and mice respectively. The phylogenetic trees constructed using all expressed alpha and beta genes from marsupials and placental mammals showed that: (1) because marsupials carry loci corresponding to DR, DP, DO and DM genes, those subregions most likely developed before the divergence of marsupials and placental mammals, approximately 150 million years ago (MYA); (2) conversely, the DQ and DY regions must have evolved later, but before the radiation of placental mammals (100 MYA). As a result, the typical genomic structure of MHC class II genes for the giant panda is similar to that of the other placental mammals and corresponds to BTNL2 approximately DR1 approximately DQ approximately DR2 approximately DY approximately DO_box approximately DP approximately COL11A2. Over the past 100 million years, there has been birth and death of mammalian DR, DQ, DY, and DP genes, an evolutionary process that has brought about the current species-specific genomic structure of the MHC class II region. Furthermore, facing certain similar pathogens, mammals have adopted intra-subregion (DR and DQ) and inter-subregion (between DQ and DP) convergent evolutionary strategies for their alpha and beta genes, respectively.
- Published
- 2009
48. Azvudine, A Novel Nucleoside Reverse Transcriptase Inhibitor Showed Good Drug Combination Features and Better Inhibition on Drug-Resistant Strains than Lamivudine In Vitro
- Author
-
Wang, Rui-Rui, primary, Yang, Qing-Hua, additional, Luo, Rong-Hua, additional, Peng, You-Mei, additional, Dai, Shao-Xing, additional, Zhang, Xing-Jie, additional, Chen, Huan, additional, Cui, Xue-Qing, additional, Liu, Ya-Juan, additional, Huang, Jing-Fei, additional, Chang, Jun-Biao, additional, and Zheng, Yong-Tang, additional
- Published
- 2014
- Full Text
- View/download PDF
49. Development of Safe and Effective RSV Vaccine by Modified CD4 Epitope in G Protein Core Fragment (Gcf)
- Author
-
Cheon, In Su, primary, Shim, Byoung-Shik, additional, Park, Sung-Moo, additional, Choi, Youngjoo, additional, Jang, Ji Eun, additional, Jung, Dae Im, additional, Kim, Jae-Ouk, additional, Chang, Jun, additional, Yun, Cheol-Heui, additional, and Song, Man Ki, additional
- Published
- 2014
- Full Text
- View/download PDF
50. Epidemiological and Clinical Characteristics and Risk Factors for Death of Patients with Avian Influenza A H7N9 Virus Infection from Jiangsu Province, Eastern China
- Author
-
Ji, Hong, primary, Gu, Qin, additional, Chen, Li-ling, additional, Xu, Ke, additional, Ling, Xia, additional, Bao, Chang-jun, additional, Tang, Fen-yang, additional, Qi, Xian, additional, Wu, Ying-qiu, additional, Ai, Jing, additional, Shen, Gu-yu, additional, Dong, Dan-jiang, additional, Yu, Hui-yan, additional, Huang, Mao, additional, Cao, Quan, additional, Xu, Ying, additional, Zhao, Wei, additional, Xu, Yang-ting, additional, Xia, Yu, additional, Chen, Shan-hui, additional, Yang, Gen-lin, additional, Gu, Cai-ling, additional, Xie, Guo-xiang, additional, Zhu, Ye-fei, additional, Zhu, Feng-cai, additional, and Zhou, Ming-hao, additional
- Published
- 2014
- Full Text
- View/download PDF
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