1. Accumulative difference image protocol for particle tracking in fluorescence microscopy tested in mouse lymphonodes
- Author
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Giuseppe Chirico, Ilaria Rivolta, Tatiana Gorletta, Laura D'Alfonso, Francesca Granucci, Laura Sironi, Giuseppe Miserocchi, Maddalena Collini, Ivan Zanoni, Carlo E. Villa, Michele Caccia, Villa, C, Caccia, M, Sironi, L, D'Alfonso, L, Collini, M, Rivolta, I, Miserocchi, G, Gorletta, T, Zanoni, I, Granucci, F, and Chirico, G
- Subjects
Fluorescence-lifetime imaging microscopy ,Time Factors ,Radiology and Medical Imaging ,Computer science ,Science ,Intracellular Space ,Image processing ,02 engineering and technology ,Tracking (particle physics) ,tracking algorithm ,Edge detection ,Physics/Interdisciplinary Physics ,03 medical and health sciences ,Mice ,Signal-to-noise ratio ,Microscopy ,0202 electrical engineering, electronic engineering, information engineering ,Fluorescence microscope ,Image Processing, Computer-Assisted ,Animals ,Computer vision ,Lymphocytes ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,business.industry ,Noise (signal processing) ,Image segmentation ,lymph node ,Fluorescence ,Molecular Imaging ,Microscopy, Fluorescence ,microscopy ,Medicine ,020201 artificial intelligence & image processing ,Biophysics/Experimental Biophysical Methods ,Artificial intelligence ,fluorescence ,business ,Preclinical imaging ,Algorithms ,Research Article - Abstract
The basic research in cell biology and in medical sciences makes large use of imaging tools mainly based on confocal fluorescence and, more recently, on non-linear excitation microscopy. Substantially the aim is the recognition of selected targets in the image and their tracking in time. We have developed a particle tracking algorithm optimized for low signal/noise images with a minimum set of requirements on the target size and with no a priori knowledge of the type of motion. The image segmentation, based on a combination of size sensitive filters, does not rely on edge detection and is tailored for targets acquired at low resolution as in most of the in-vivo studies. The particle tracking is performed by building, from a stack of Accumulative Difference Images, a single 2D image in which the motion of the whole set of the particles is coded in time by a color level. This algorithm, tested here on solid-lipid nanoparticles diffusing within cells and on lymphocytes diffusing in lymphonodes, appears to be particularly useful for the cellular and the in-vivo microscopy image processing in which few a priori assumption on the type, the extent and the variability of particle motions, can be done.
- Published
- 2010