9 results on '"Guoguang Ying"'
Search Results
2. Regulation of cell transformation by Rb-controlled redox homeostasis.
- Author
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Zhongling Zhu, Yuanyuan Wang, Zheng Liang, Wenwen Wang, Huamei Zhang, Binghui Li, and Guoguang Ying
- Subjects
Medicine ,Science - Abstract
Rb is a tumor suppressor, and regulates various biological progresses, such as cell proliferation, development, metabolism and cell death. In the current study, we show that Rb knockout in 3T3 cells leads to oxidative redox state and low mitochondrial membrane potential by regulating mitochondrial activity. Our results indicate that Rb plays an important role in controlling redox homeostasis. More importantly, the functions of Rb in modulating cell proliferation, death and transformation are, at least in part, mediated by its controlling cellular redox state. In addition, our results also suggest that the cellular redox state possibly determines various biological activities, including cell survival, death and transformation, where Rb is functioning as a regulator of redox homeostasis.
- Published
- 2014
- Full Text
- View/download PDF
3. Knockdown a water channel protein, aquaporin-4, induced glioblastoma cell apoptosis.
- Author
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Ting Ding, Ying Zhou, Kai Sun, Weizhong Jiang, Wenliang Li, Xiaoli Liu, Chunying Tian, Zhihui Li, Guoguang Ying, Li Fu, Feng Gu, Weidong Li, and Yongjie Ma
- Subjects
Medicine ,Science - Abstract
Glioblastomas are the most aggressive forms of primary brain tumors due to their tendency to invade surrounding healthy brain tissues, rendering them largely incurable. The water channel protein, Aquaporin-4 (AQP4) is a key molecule for maintaining water and ion homeostasis in the central nervous system and has recently been reported with cell survival except for its well-known function in brain edema. An increased AQP4 expression has been demonstrated in glioblastoma multiforme (GBM), suggesting it is also involved in malignant brain tumors. In this study, we show that siRNA-mediated down regulation of AQP4 induced glioblastoma cell apoptosis in vitro and in vivo. We further show that several apoptotic key proteins, Cytochrome C, Bcl-2 and Bad are involved in AQP4 signaling pathways. Our results indicate that AQP4 may serve as an anti-apoptosis target for therapy of glioblastoma.
- Published
- 2013
- Full Text
- View/download PDF
4. Dysfunctional activation of neurotensin/IL-8 pathway in hepatocellular carcinoma is associated with increased inflammatory response in microenvironment, more epithelial mesenchymal transition in cancer and worse prognosis in patients.
- Author
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Jinpu Yu, Xiubao Ren, Yongzi Chen, Pengpeng Liu, Xiyin Wei, Hui Li, Guoguang Ying, Kexin Chen, Hans Winkler, and Xishan Hao
- Subjects
Medicine ,Science - Abstract
AIM: To investigate the role of neurotensin (NTS) in hepatocellular carcinoma (HCC) sub- grouping and the clinical and pathological significance of activation of NTS/IL-8 pathway in HCC. METHODS: The genome-wide gene expression profiling were conducted in 10 pairs of cancer tissues and corresponding normal adjacent tissues samples using Affymetrix GeneChip® Human Genome U133 Plus 2.0 microarray to screen differentially expressing genes and enrich dysfunctional activated pathways among different HCC subgroups. The levels of NTS protein and multiple inflammation and epithelial mesenchymal transition (EMT) related proteins, including IL-8, VEGF, MMP9, CD68, E-Cadherin, β-Catenin and Vimentin were examined in 64 cases of paraffin-embedded HCC samples using immunohistochemistry (IHC) staining method. The clinical outcome and overall survival (OS) were compared. RESULTS: A subgroup of HCC characterized by up-regulated NTS expression was accompanied by up-regulated inflammatory responses and EMT. The direct interaction between NTS and IL-8 was identified by pathway enrichment analysis. Significantly increased IL-8 protein was confirmed in 90.91% of NTS(+) HCC samples and significantly positively correlated to the levels of NTS protein in cancer tissues (P = 0.036), which implied activation of NTS/IL-8 pathway in HCC. The levels of VEGF and MMP9 correlated with co-expression of NTS and IL-8. Increased infiltration of CD68(+) macrophages and more cancer cells displaying EMT features were found in NTS(+)IL-8(+) samples. The co-expression of NTS and IL-8 in cancer significantly correlated with the clinical outcomes, as the mortality rate of NTS(+)IL-8(+) HCC patients is 2.5-fold higher than the others after the surgery (P = 0.022). Accordingly, the OS of NTS(+)IL-8(+) HCC patients significantly decreased who are under a higher hazard of death at an expected hazard ratio (HR) of 3.457. CONCLUSION: Dysfunctional activation of the NTS/IL-8 pathway was detected in HCC which is associated with increased inflammatory response in microenvironment, enhanced EMT in cancer, and worse prognosis in HCC patients.
- Published
- 2013
- Full Text
- View/download PDF
5. SUMOhydro: a novel method for the prediction of sumoylation sites based on hydrophobic properties.
- Author
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Yong-Zi Chen, Zhen Chen, Yu-Ai Gong, and Guoguang Ying
- Subjects
Medicine ,Science - Abstract
Sumoylation is one of the most essential mechanisms of reversible protein post-translational modifications and is a crucial biochemical process in the regulation of a variety of important biological functions. Sumoylation is also closely involved in various human diseases. The accurate computational identification of sumoylation sites in protein sequences aids in experimental design and mechanistic research in cellular biology. In this study, we introduced amino acid hydrophobicity as a parameter into a traditional binary encoding scheme and developed a novel sumoylation site prediction tool termed SUMOhydro. With the assistance of a support vector machine, the proposed method was trained and tested using a stringent non-redundant sumoylation dataset. In a leave-one-out cross-validation, the proposed method yielded an excellent performance with a correlation coefficient, specificity, sensitivity and accuracy equal to 0.690, 98.6%, 71.1% and 97.5%, respectively. In addition, SUMOhydro has been benchmarked against previously described predictors based on an independent dataset, thereby suggesting that the introduction of hydrophobicity as an additional parameter could assist in the prediction of sumoylation sites. Currently, SUMOhydro is freely accessible at http://protein.cau.edu.cn/others/SUMOhydro/.
- Published
- 2012
- Full Text
- View/download PDF
6. Renal thrombotic microangiopathy in mice with combined deletion of endocytic recycling regulators EHD3 and EHD4.
- Author
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Manju George, Mark A Rainey, Mayumi Naramura, Kirk W Foster, Melissa S Holzapfel, Laura L Willoughby, GuoGuang Ying, Rasna M Goswami, Channabasavaiah B Gurumurthy, Vimla Band, Simon C Satchell, and Hamid Band
- Subjects
Medicine ,Science - Abstract
Eps15 Homology Domain-containing 3 (EHD3), a member of the EHD protein family that regulates endocytic recycling, is the first protein reported to be specifically expressed in the glomerular endothelium in the kidney; therefore we generated Ehd3(-/-) mice and assessed renal development and pathology. Ehd3(-/-) animals showed no overt defects, and exhibited no proteinuria or glomerular pathology. However, as the expression of EHD4, a related family member, was elevated in the glomerular endothelium of Ehd3(-/-) mice and suggested functional compensation, we generated and analyzed Ehd3(-/-); Ehd4(-/-) mice. These mice were smaller, possessed smaller and paler kidneys, were proteinuric and died between 3-24 weeks of age. Detailed analyses of Ehd3(-/-); Ehd4(-/-) kidneys demonstrated thrombotic microangiopathy (TMA)-like glomerular lesions including thickening and duplication of glomerular basement membrane, endothelial swelling and loss of fenestrations. Other changes included segmental podocyte foot process effacement, mesangial interposition, and abnormal podocytic and mesangial marker expression. The glomerular lesions observed were strikingly similar to those seen in human pre-eclampsia and mouse models of reduced VEGF expression. As altered glomerular endothelial VEGFR2 expression and localization and increased apoptosis was observed in the absence of EHD3 and EHD4, we propose that EHD-mediated endocytic traffic of key surface receptors such as VEGFR2 is essential for physiological control of glomerular function. Furthermore, Ehd3(-/-); Ehd4(-/-) mice provide a unique model to elucidate mechanisms of glomerular endothelial injury which is observed in a wide variety of human renal and extra-renal diseases.
- Published
- 2011
- Full Text
- View/download PDF
7. Dysfunctional activation of neurotensin/IL-8 pathway in hepatocellular carcinoma is associated with increased inflammatory response in microenvironment, more epithelial mesenchymal transition in cancer and worse prognosis in patients
- Author
-
Yongzi Chen, Xishan Hao, Hui Li, Xiubao Ren, Kexin Chen, Guoguang Ying, Pengpeng Liu, Xiyin Wei, Hans Winkler, and Jinpu Yu
- Subjects
Male ,Pathology ,Colorectal cancer ,Microarrays ,Epidemiology ,lcsh:Medicine ,Vimentin ,Gastrointestinal Cancers ,Basic Cancer Research ,Tumor Microenvironment ,Cluster Analysis ,Gene Regulatory Networks ,lcsh:Science ,Neurotensin ,Oligonucleotide Array Sequence Analysis ,Multidisciplinary ,biology ,Liver Neoplasms ,Genomics ,Middle Aged ,respiratory system ,Prognosis ,Immunohistochemistry ,Gene Expression Regulation, Neoplastic ,Oncology ,Hepatocellular carcinoma ,Medicine ,Female ,Cancer Epidemiology ,Signal Transduction ,Research Article ,circulatory and respiratory physiology ,Adult ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,Epithelial-Mesenchymal Transition ,Gastroenterology and Hepatology ,Gastrointestinal Tumors ,medicine ,Carcinoma ,Humans ,Epithelial–mesenchymal transition ,Biology ,Aged ,Inflammation ,Tumor microenvironment ,Gene Expression Profiling ,Interleukin-8 ,lcsh:R ,Immunity ,Computational Biology ,Cancers and Neoplasms ,Hepatocellular Carcinoma ,medicine.disease ,Survival Analysis ,nervous system ,Cancer cell ,biology.protein ,Cancer research ,Clinical Immunology ,lcsh:Q ,Genome Expression Analysis - Abstract
Aim To investigate the role of neurotensin (NTS) in hepatocellular carcinoma (HCC) sub- grouping and the clinical and pathological significance of activation of NTS/IL-8 pathway in HCC. Methods The genome-wide gene expression profiling were conducted in 10 pairs of cancer tissues and corresponding normal adjacent tissues samples using Affymetrix GeneChip® Human Genome U133 Plus 2.0 microarray to screen differentially expressing genes and enrich dysfunctional activated pathways among different HCC subgroups. The levels of NTS protein and multiple inflammation and epithelial mesenchymal transition (EMT) related proteins, including IL-8, VEGF, MMP9, CD68, E-Cadherin, β-Catenin and Vimentin were examined in 64 cases of paraffin-embedded HCC samples using immunohistochemistry (IHC) staining method. The clinical outcome and overall survival (OS) were compared. Results A subgroup of HCC characterized by up-regulated NTS expression was accompanied by up-regulated inflammatory responses and EMT. The direct interaction between NTS and IL-8 was identified by pathway enrichment analysis. Significantly increased IL-8 protein was confirmed in 90.91% of NTS(+) HCC samples and significantly positively correlated to the levels of NTS protein in cancer tissues (P = 0.036), which implied activation of NTS/IL-8 pathway in HCC. The levels of VEGF and MMP9 correlated with co-expression of NTS and IL-8. Increased infiltration of CD68(+) macrophages and more cancer cells displaying EMT features were found in NTS(+)IL-8(+) samples. The co-expression of NTS and IL-8 in cancer significantly correlated with the clinical outcomes, as the mortality rate of NTS(+)IL-8(+) HCC patients is 2.5-fold higher than the others after the surgery (P = 0.022). Accordingly, the OS of NTS(+)IL-8(+) HCC patients significantly decreased who are under a higher hazard of death at an expected hazard ratio (HR) of 3.457. Conclusion Dysfunctional activation of the NTS/IL-8 pathway was detected in HCC which is associated with increased inflammatory response in microenvironment, enhanced EMT in cancer, and worse prognosis in HCC patients.
- Published
- 2013
8. SUMOhydro: A Novel Method for the Prediction of Sumoylation Sites Based on Hydrophobic Properties
- Author
-
Guoguang Ying, Yu Ai Gong, Yong Zi Chen, and Zhen Chen
- Subjects
Proteomics ,Protein Structure ,Support Vector Machine ,Molecular Sequence Data ,SUMO protein ,lcsh:Medicine ,Computational biology ,Bioinformatics ,Biochemistry ,Protein sequencing ,Molecular Cell Biology ,Amino Acid Sequence ,lcsh:Science ,Biology ,Binding Sites ,Multidisciplinary ,Chemistry ,lcsh:R ,Mechanisms of Signal Transduction ,Proteins ,Computational Biology ,Sumoylation ,Binary encoding ,Regulatory Proteins ,Support vector machine ,ROC Curve ,Small Ubiquitin-Related Modifier Proteins ,lcsh:Q ,Sequence Analysis ,Research Article ,Signal Transduction - Abstract
Sumoylation is one of the most essential mechanisms of reversible protein post-translational modifications and is a crucial biochemical process in the regulation of a variety of important biological functions. Sumoylation is also closely involved in various human diseases. The accurate computational identification of sumoylation sites in protein sequences aids in experimental design and mechanistic research in cellular biology. In this study, we introduced amino acid hydrophobicity as a parameter into a traditional binary encoding scheme and developed a novel sumoylation site prediction tool termed SUMOhydro. With the assistance of a support vector machine, the proposed method was trained and tested using a stringent non-redundant sumoylation dataset. In a leave-one-out cross-validation, the proposed method yielded an excellent performance with a correlation coefficient, specificity, sensitivity and accuracy equal to 0.690, 98.6%, 71.1% and 97.5%, respectively. In addition, SUMOhydro has been benchmarked against previously described predictors based on an independent dataset, thereby suggesting that the introduction of hydrophobicity as an additional parameter could assist in the prediction of sumoylation sites. Currently, SUMOhydro is freely accessible at http://protein.cau.edu.cn/others/SUMOhydro/.
- Published
- 2012
9. Renal Thrombotic Microangiopathy in Mice with Combined Deletion of Endocytic Recycling Regulators EHD3 and EHD4.
- Author
-
George, Manju, Rainey, Mark A., Naramura, Mayumi, Foster, Kirk W., Holzapfel, Melissa S., Willoughby, Laura L., GuoGuang Ying, Goswami, Rasna M., Gurumurthy, Channabasavaiah B., Band, Vimla, Satchell, Simon C., and Band, Hamid
- Subjects
GENITOURINARY organs ,URINARY organs ,KIDNEY diseases ,CELL death ,URINARY incontinence - Abstract
Eps15 Homology Domain-containing 3 (EHD3), a member of the EHD protein family that regulates endocytic recycling, is the first protein reported to be specifically expressed in the glomerular endothelium in the kidney; therefore we generated Ehd3
-/- mice and assessed renal development and pathology. Ehd3-/- animals showed no overt defects, and exhibited no proteinuria or glomerular pathology. However, as the expression of EHD4, a related family member, was elevated in the glomerular endothelium of Ehd3-/- mice and suggested functional compensation, we generated and analyzed Ehd3-/- ; Ehd4-/- mice. These mice were smaller, possessed smaller and paler kidneys, were proteinuric and died between 3-24 weeks of age. Detailed analyses of Ehd3-/- ; Ehd4-/- kidneys demonstrated thrombotic microangiopathy (TMA)-like glomerular lesions including thickening and duplication of glomerular basement membrane, endothelial swelling and loss of fenestrations. Other changes included segmental podocyte foot process effacement, mesangial interposition, and abnormal podocytic and mesangial marker expression. The glomerular lesions observed were strikingly similar to those seen in human pre-eclampsia and mouse models of reduced VEGF expression. As altered glomerular endothelial VEGFR2 expression and localization and increased apoptosis was observed in the absence of EHD3 and EHD4, we propose that EHD-mediated endocytic traffic of key surface receptors such as VEGFR2 is essential for physiological control of glomerular function. Furthermore, Ehd3-/- ; Ehd4-/- mice provide a unique model to elucidate mechanisms of glomerular endothelial injury which is observed in a wide variety of human renal and extra-renal diseases. [ABSTRACT FROM AUTHOR]- Published
- 2011
- Full Text
- View/download PDF
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