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5. Genome-Wide Delineation of Natural Variation for Pod Shatter Resistance in Brassica napus

Author

Raman, Harsh, primary, Raman, Rosy, additional, Kilian, Andrzej, additional, Detering, Frank, additional, Carling, Jason, additional, Coombes, Neil, additional, Diffey, Simon, additional, Kadkol, Gururaj, additional, Edwards, David, additional, McCully, Margaret, additional, Ruperao, Pradeep, additional, Parkin, Isobel A. P., additional, Batley, Jacqueline, additional, Luckett, David J., additional, and Wratten, Neil, additional

Published
2014
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7. Genome-Wide Association Mapping of Root Traits in a Japonica Rice Panel

Author

Courtois, Brigitte, primary, Audebert, Alain, additional, Dardou, Audrey, additional, Roques, Sandrine, additional, Ghneim- Herrera, Thaura, additional, Droc, Gaëtan, additional, Frouin, Julien, additional, Rouan, Lauriane, additional, Gozé, Eric, additional, Kilian, Andrzej, additional, Ahmadi, Nourollah, additional, and Dingkuhn, Michael, additional

Published
2013
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9. Genomic Characterization of DArT Markers Based on High-Density Linkage Analysis and Physical Mapping to the Eucalyptus Genome

Author

Petroli, César D., primary, Sansaloni, Carolina P., additional, Carling, Jason, additional, Steane, Dorothy A., additional, Vaillancourt, René E., additional, Myburg, Alexander A., additional, da Silva, Orzenil Bonfim, additional, Pappas, Georgios Joannis, additional, Kilian, Andrzej, additional, and Grattapaglia, Dario, additional

Published
2012
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10. Genetic Structure, Linkage Disequilibrium and Signature of Selection in Sorghum: Lessons from Physically Anchored DArT Markers

Author

Bouchet, Sophie, primary, Pot, David, additional, Deu, Monique, additional, Rami, Jean-François, additional, Billot, Claire, additional, Perrier, Xavier, additional, Rivallan, Ronan, additional, Gardes, Laëtitia, additional, Xia, Ling, additional, Wenzl, Peter, additional, Kilian, Andrzej, additional, and Glaszmann, Jean-Christophe, additional

Published
2012
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11. A High Density Consensus Map of Rye (Secale cereale L.) Based on DArT Markers

Author

Milczarski, Paweł, primary, Bolibok-Brągoszewska, Hanna, additional, Myśków, Beata, additional, Stojałowski, Stefan, additional, Heller-Uszyńska, Katarzyna, additional, Góralska, Magdalena, additional, Brągoszewski, Piotr, additional, Uszyński, Grzegorz, additional, Kilian, Andrzej, additional, and Rakoczy-Trojanowska, Monika, additional

Published
2011
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12. Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.)

Author

Thudi, Mahendar, primary, Bohra, Abhishek, additional, Nayak, Spurthi N., additional, Varghese, Nicy, additional, Shah, Trushar M., additional, Penmetsa, R. Varma, additional, Thirunavukkarasu, Nepolean, additional, Gudipati, Srivani, additional, Gaur, Pooran M., additional, Kulwal, Pawan L., additional, Upadhyaya, Hari D., additional, KaviKishor, Polavarapu B., additional, Winter, Peter, additional, Kahl, Günter, additional, Town, Christopher D., additional, Kilian, Andrzej, additional, Cook, Douglas R., additional, and Varshney, Rajeev K., additional

Published
2011
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15. Genome-Wide Delineation of Natural Variation for Pod Shatter Resistance in Brassica napus.

Author

Raman, Harsh, Raman, Rosy, Kilian, Andrzej, Detering, Frank, Carling, Jason, Coombes, Neil, Diffey, Simon, Kadkol, Gururaj, Edwards, David, McCully, Margaret, Ruperao, Pradeep, Parkin, Isobel A. P., Batley, Jacqueline, Luckett, David J., and Wratten, Neil

Subjects
RAPESEED, CROP growth, NUCLEOTIDE sequencing, LOCUS in plant genetics, ARABIDOPSIS, SPECIES diversity
Abstract

Resistance to pod shattering (shatter resistance) is a target trait for global rapeseed (canola, Brassica napus L.), improvement programs to minimise grain loss in the mature standing crop, and during windrowing and mechanical harvest. We describe the genetic basis of natural variation for shatter resistance in B. napus and show that several quantitative trait loci (QTL) control this trait. To identify loci underlying shatter resistance, we used a novel genotyping-by-sequencing approach DArT-Seq. QTL analysis detected a total of 12 significant QTL on chromosomes A03, A07, A09, C03, C04, C06, and C08; which jointly account for approximately 57% of the genotypic variation in shatter resistance. Through Genome-Wide Association Studies, we show that a large number of loci, including those that are involved in shattering in Arabidopsis, account for variation in shatter resistance in diverse B. napus germplasm. Our results indicate that genetic diversity for shatter resistance genes in B. napus is limited; many of the genes that might control this trait were not included during the natural creation of this species, or were not retained during the domestication and selection process. We speculate that valuable diversity for this trait was lost during the natural creation of B. napus. To improve shatter resistance, breeders will need to target the introduction of useful alleles especially from genotypes of other related species of Brassica, such as those that we have identified. [ABSTRACT FROM AUTHOR]

Published
2014
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16. Genome-Wide Delineation of Natural Variation for Pod Shatter Resistance in Brassica napus.

Author

Raman, Harsh, Raman, Rosy, Kilian, Andrzej, Detering, Frank, Carling, Jason, Coombes, Neil, Diffey, Simon, Kadkol, Gururaj, Edwards, David, McCully, Margaret, Ruperao, Pradeep, Parkin, Isobel A. P., Batley, Jacqueline, Luckett, David J., and Wratten, Neil

Subjects
*RAPESEED, *CROP growth, *NUCLEOTIDE sequencing, *LOCUS in plant genetics, *ARABIDOPSIS, *SPECIES diversity
Abstract

Resistance to pod shattering (shatter resistance) is a target trait for global rapeseed (canola, Brassica napus L.), improvement programs to minimise grain loss in the mature standing crop, and during windrowing and mechanical harvest. We describe the genetic basis of natural variation for shatter resistance in B. napus and show that several quantitative trait loci (QTL) control this trait. To identify loci underlying shatter resistance, we used a novel genotyping-by-sequencing approach DArT-Seq. QTL analysis detected a total of 12 significant QTL on chromosomes A03, A07, A09, C03, C04, C06, and C08; which jointly account for approximately 57% of the genotypic variation in shatter resistance. Through Genome-Wide Association Studies, we show that a large number of loci, including those that are involved in shattering in Arabidopsis, account for variation in shatter resistance in diverse B. napus germplasm. Our results indicate that genetic diversity for shatter resistance genes in B. napus is limited; many of the genes that might control this trait were not included during the natural creation of this species, or were not retained during the domestication and selection process. We speculate that valuable diversity for this trait was lost during the natural creation of B. napus. To improve shatter resistance, breeders will need to target the introduction of useful alleles especially from genotypes of other related species of Brassica, such as those that we have identified. [ABSTRACT FROM AUTHOR]

Published
2014
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