1. T cell receptor repertoire among women who cleared and failed to clear cervical human papillomavirus infection: An exploratory proof-of-principle study
- Author
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Krystle A. Lang Kuhs, Christian C. Abnet, Xing Hua, Neal D. Freedman, Mark Schiffman, Robert D. Burk, Shih-Wen Lin, Harlan Robins, Allan Hildesheim, Ana Cecilia Rodriguez, David Hamm, Mahboobeh Safaeian, Rolando Herrero, Ligia A. Pinto, and Jianxin Shi
- Subjects
0301 basic medicine ,Viral Diseases ,Physiology ,Epidemiology ,Uterine Cervical Neoplasms ,lcsh:Medicine ,Protein Sequencing ,Pathology and Laboratory Medicine ,Immune Receptors ,Biochemistry ,Cohort Studies ,White Blood Cells ,Database and Informatics Methods ,0302 clinical medicine ,Animal Cells ,Medicine and Health Sciences ,lcsh:Science ,VDJ Recombinases ,Human papillomavirus 16 ,Intraepithelial neoplasia ,Immune System Proteins ,Multidisciplinary ,T Cells ,HPV infection ,female genital diseases and pregnancy complications ,Body Fluids ,Infectious Diseases ,Blood ,Medical Microbiology ,Viral Pathogens ,030220 oncology & carcinogenesis ,Viruses ,Female ,Cellular Types ,Pathogens ,Anatomy ,Sequence Analysis ,Research Article ,Signal Transduction ,Human Papillomavirus Infection ,Papillomaviruses ,Bioinformatics ,Immune Cells ,Urology ,Immunology ,Receptors, Antigen, T-Cell ,Sexually Transmitted Diseases ,Context (language use) ,Biology ,Research and Analysis Methods ,Microbiology ,Natural history of disease ,HPV-16 ,03 medical and health sciences ,Amino Acid Sequence Analysis ,Antigen ,medicine ,Humans ,Molecular Biology Techniques ,Sequencing Techniques ,Microbial Pathogens ,Molecular Biology ,Blood Cells ,Genitourinary Infections ,Papillomavirus Infections ,T-cell receptor ,lcsh:R ,Organisms ,Case-control study ,Reproducibility of Results ,Biology and Life Sciences ,Proteins ,Cancer ,Cell Biology ,Uterine Cervical Dysplasia ,medicine.disease ,T Cell Receptors ,Natural History of Disease ,030104 developmental biology ,Case-Control Studies ,lcsh:Q ,DNA viruses - Abstract
Background It is unknown why a minority of women fail to clear human papillomavirus (HPV) and develop precancer/cancer. Differences in T-cell receptor (TCR) repertoires may identify HPV16-infected women at highest-risk for progression to cancer. We conducted a proof-of-principle study nested within the Guanacaste HPV Natural History Study to evaluate the utility of next-generation sequencing for interrogating the TCR repertoires among women who cleared and failed to clear cervical HPV16. Methods TCR repertoires of women with HPV16-related intraepithelial neoplasia grade 3 or higher (CIN3+; n = 25) were compared to women who cleared an incident HPV16 infection without developing precancer/cancer (n = 25). TCR diversity (richness and evenness) and relative abundance (RA) of gene segment (V [n = 51], D [n = 2], J [n = 13]) usage was evaluated; receiver operating curve analysis assessed the ability to differentiate case-control status. Results TCR repertoire richness was associated with CIN3+ status (P = 0.001). Relative abundance (RA) of V-gene segments was enriched for associations between cases and controls. A single V-gene (TRBV6-7) was significantly associated with CIN3+ status (RA = 0.11%, 0.16%, among cases and controls, respectively, Bonferroni P = 0.0008). The estimated area under the curve using richness and V-gene segment RA was 0.83 (95% confidence interval: 0.73–0.90). Conclusions Substantial differences in TCR repertoire among women with CIN3+ compared to women who cleared infection were observed. Impact This is the first study to use next-generation sequencing to investigate TCR repertoire in the context of HPV infection. These findings suggest that women with HPV16-associated cervical lesions have significantly different TCR repertoires from disease-free women who cleared HPV16 infection.
- Published
- 2018