1. Comparing resting state fMRI de-noising approaches using multi- and single-echo acquisitions
- Author
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Giuseppe Baselli, Prantik Kundu, Neil A. Harrison, Ottavia Dipasquale, Francesca Baglio, Mara Cercignani, Arjun Sethi, and Maria Marcella Laganà
- Subjects
Central Nervous System ,Male ,Genetics and Molecular Biology (all) ,Physiology ,Computer science ,Image Processing ,lcsh:Medicine ,Hippocampus ,Nervous System ,Biochemistry ,Motion (physics) ,Diagnostic Radiology ,Computer-Assisted ,0302 clinical medicine ,Cerebrospinal fluid ,Functional Magnetic Resonance Imaging ,Image Processing, Computer-Assisted ,Medicine and Health Sciences ,lcsh:Science ,Default mode network ,Cerebrospinal Fluid ,Statistical Data ,Brain Mapping ,Multidisciplinary ,medicine.diagnostic_test ,Radiology and Imaging ,Functional connectivity ,05 social sciences ,Brain ,Magnetic Resonance Imaging ,Body Fluids ,Data Acquisition ,medicine.anatomical_structure ,Neurology ,R895 ,Cerebrovascular Circulation ,Head Movements ,Physical Sciences ,Female ,Brainstem ,Anatomy ,Artifacts ,Statistics (Mathematics) ,Research Article ,Adult ,Computer and Information Sciences ,Imaging Techniques ,Rest ,Central nervous system ,Neuropsychiatric Disorders ,Neuroimaging ,Image processing ,Research and Analysis Methods ,050105 experimental psychology ,White matter ,03 medical and health sciences ,Developmental Neuroscience ,Diagnostic Medicine ,Mental Health and Psychiatry ,medicine ,Humans ,0501 psychology and cognitive sciences ,Attention Deficit Disorder with Hyperactivity ,Linear Models ,Oxygen ,Biochemistry, Genetics and Molecular Biology (all) ,Agricultural and Biological Sciences (all) ,Artifact (error) ,Resting state fMRI ,business.industry ,lcsh:R ,Biology and Life Sciences ,Pattern recognition ,Magnetic resonance imaging ,Neurodevelopmental Disorders ,Adhd ,lcsh:Q ,Artificial intelligence ,Nuclear medicine ,business ,Functional magnetic resonance imaging ,Head ,Mathematics ,030217 neurology & neurosurgery ,Neuroscience - Abstract
Artifact removal in resting state fMRI (rfMRI) data remains a serious challenge, with even subtle head motion undermining reliability and reproducibility. Here we compared some of the most popular single-echo de-noising methodsÐregression of Motion parameters, White matter and Cerebrospinal fluid signals (MWC method), FMRIB's ICA-based X-noiseifier (FIX) and ICA-based Automatic Removal Of motion Artifacts (ICA-AROMA)Ðwith a multiecho approach (ME-ICA) that exploits the linear dependency of BOLD on the echo time. Data were acquired using a clinical scanner and included 30 young, healthy participants (minimal head motion) and 30 Attention Deficit Hyperactivity Disorder patients (greater head motion). De-noising effectiveness was assessed in terms of data quality after each cleanup\ud procedure, ability to uncouple BOLD signal and motion and preservation of default mode network (DMN) functional connectivity. Most cleaning methods showed a positive impact on data quality. However, based on the investigated metrics, ME-ICA was the most robust. It minimized the impact of motion on FC even for high motion participants and preserved DMN functional connectivity structure. The high-quality results obtained using ME-ICA suggest that using a multi-echo EPI sequence, reliable rfMRI data can be obtained in a clinical setting.
- Published
- 2017
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