138 results on '"de Leeuw A"'
Search Results
2. Sharp increase in inequality in education in times of the COVID-19-pandemic
- Author
-
Haelermans, Carla, primary, Korthals, Roxanne, additional, Jacobs, Madelon, additional, de Leeuw, Suzanne, additional, Vermeulen, Stan, additional, van Vugt, Lynn, additional, Aarts, Bas, additional, Prokic-Breuer, Tijana, additional, van der Velden, Rolf, additional, van Wetten, Sanne, additional, and de Wolf, Inge, additional
- Published
- 2022
- Full Text
- View/download PDF
3. Acceptability, effectiveness and cost-effectiveness of blended cognitive-behavioural therapy (bCBT) versus face-to-face CBT (ftfCBT) for anxiety disorders in specialised mental health care: A 15-week randomised controlled trial with 1-year follow-up
- Author
-
Romijn, Geke, primary, Batelaan, Neeltje, additional, Koning, Jeroen, additional, van Balkom, Anton, additional, de Leeuw, Aart, additional, Benning, Friederike, additional, Hakkaart van Roijen, Leona, additional, and Riper, Heleen, additional
- Published
- 2021
- Full Text
- View/download PDF
4. Re-evaluating randomized clinical trials of psychological interventions: Impact of response shift on the interpretation of trial results
- Author
-
Mirjam A. G. Sprangers, W. van Ballegooijen, M. de Wit, Mathilde G. E. Verdam, C. J. M. Holtmaat, I.M. Verdonck de Leeuw, Heleen Riper, Jaap Lancee, Frans J. Oort, T. van der Zweerde, A. van Straten, Hans Knoop, Psychiatry, APH - Mental Health, Otolaryngology / Head & Neck Surgery, Medical psychology, Gastroenterology and hepatology, APH - Global Health, APH - Personalized Medicine, CCA - Cancer Treatment and quality of life, Amsterdam Reproduction & Development (AR&D), Clinical Psychology, Developmental Psychopathology (RICDE, FMG), Klinische Psychologie (Psychologie, FMG), Methods and Statistics (RICDE, FMG), Medical Psychology, CCA - Cancer Treatment and Quality of Life, APH - Aging & Later Life, APH - Methodology, and Montazeri Ali
- Subjects
Male ,Physiology ,medicine.medical_treatment ,Cancer Treatment ,Psychological intervention ,Social Sciences ,law.invention ,Group psychotherapy ,Medical Conditions ,Endocrinology ,Randomized controlled trial ,law ,Sleep Initiation and Maintenance Disorders ,Medicine and Health Sciences ,Psychology ,Randomized Controlled Trials as Topic ,education.field_of_study ,Multidisciplinary ,Depression ,Cognition ,Middle Aged ,Clinical Psychology ,Mental Health ,Neurology ,Oncology ,Medicine ,Female ,Research Article ,Clinical psychology ,Insomnia ,Endocrine Disorders ,Science ,Population ,Context (language use) ,Structural equation modeling ,SDG 3 - Good Health and Well-being ,Intervention (counseling) ,Mental Health and Psychiatry ,Diabetes Mellitus ,medicine ,Humans ,education ,Cognitive Behavioral Therapy ,Mood Disorders ,business.industry ,Cognitive Psychology ,Biology and Life Sciences ,Cancers and Neoplasms ,Dyssomnias ,Psychotherapy ,Metabolic Disorders ,Cognitive Science ,Sleep Disorders ,Physiological Processes ,Sleep ,business ,Mental Health Therapies ,Neuroscience - Abstract
Background Effectiveness of psychological treatment is often assessed using patient-reported health evaluations. However, comparison of such scores over time can be hampered due to a change in the meaning of self-evaluations, called ‘response shift’. Insight into the occurrence of response shift seems especially relevant in the context of psychological interventions, as they often purposefully intend to change patients’ frames of reference. Aims The overall aim is to gain insight into the general relevance of response shift for psychological health intervention research. Specifically, the aim is to re-analyse data of published randomized controlled trials (RCTs) investigating the effectiveness of psychological interventions targeting different health aspects, to assess (1) the occurrence of response shift, (2) the impact of response shift on interpretation of treatment effectiveness, and (3) the predictive role of clinical and background variables for detected response shift. Method We re-analysed data from RCTs on guided internet delivered cognitive behavioural treatment (CBT) for insomnia in the general population with and without elevated depressive symptoms, an RCT on meaning-centred group psychotherapy targeting personal meaning for cancer survivors, and an RCT on internet-based CBT treatment for persons with diabetes with elevated depressive symptoms. Structural equation modelling was used to test the three objectives. Results We found indications of response shift in the intervention groups of all analysed datasets. However, results were mixed, as response shift was also indicated in some of the control groups, albeit to a lesser extent or in opposite direction. Overall, the detected response shifts only marginally impacted trial results. Relations with selected clinical and background variables helped the interpretation of detected effects and their possible mechanisms. Conclusion This study showed that response shift effects can occur as a result of psychological health interventions. Response shift did not influence the overall interpretation of trial results, but provide insight into differential treatment effectiveness for specific symptoms and/or domains that can be clinically meaningful.
- Published
- 2021
- Full Text
- View/download PDF
5. Re-evaluating randomized clinical trials of psychological interventions: Impact of response shift on the interpretation of trial results
- Author
-
Verdam, M. G. E., primary, van Ballegooijen, W., additional, Holtmaat, C. J. M., additional, Knoop, H., additional, Lancee, J., additional, Oort, F. J., additional, Riper, H., additional, van Straten, A., additional, Verdonck-de Leeuw, I. M., additional, de Wit, M., additional, van der Zweerde, T., additional, and Sprangers, M. A. G., additional
- Published
- 2021
- Full Text
- View/download PDF
6. Concerns of older patients and their caregivers in the emergency department
- Author
-
Sarah E. Huisman, Jacqueline Buijs, Arisja N. Mauritz, Peter W. de Leeuw, Patricia M. Stassen, Noortje Zelis, MUMC+: MA Med Staf Artsass Interne Geneeskunde (9), Interne Geneeskunde, RS: Carim - V01 Vascular complications of diabetes and metabolic syndrome, RS: Carim - V02 Hypertension and target organ damage, MUMC+: MA Alg Interne Geneeskunde (9), and RS: CAPHRI - R5 - Optimising Patient Care
- Subjects
Questionnaires ,Male ,Activities of daily living ,Critical Care and Emergency Medicine ,PERCEPTIONS ,Medical Doctors ,Health Care Providers ,Disease ,Cohort Studies ,0302 clinical medicine ,Surveys and Questionnaires ,Activities of Daily Living ,Medicine and Health Sciences ,Odds Ratio ,030212 general & internal medicine ,Medical Personnel ,Prospective Studies ,Cognitive Impairment ,Aged, 80 and over ,OUTCOMES ,Multidisciplinary ,Cognitive Neurology ,Middle Aged ,Hospitals ,Patient Discharge ,Professions ,Neurology ,Caregivers ,Research Design ,Anxiety ,Medicine ,Female ,Independent Living ,medicine.symptom ,Emergency Service, Hospital ,Cohort study ,Research Article ,medicine.medical_specialty ,Patients ,Cognitive Neuroscience ,Science ,MEDLINE ,Research and Analysis Methods ,Patient Readmission ,03 medical and health sciences ,Physicians ,medicine ,Humans ,Aged ,Survey Research ,business.industry ,Biology and Life Sciences ,030208 emergency & critical care medicine ,Emergency department ,Odds ratio ,ADULTS ,Length of Stay ,CARE ,Health Care ,Age Groups ,Health Care Facilities ,Cognitive Aging ,Family medicine ,People and Places ,Quality of Life ,Cognitive Science ,Population Groupings ,business ,Delivery of Health Care ,Independent living ,Neuroscience - Abstract
BackgroundOlder emergency department (ED) patients often have complex problems and severe illnesses with a high risk of adverse outcomes. It is likely that these older patients are troubled with concerns, which might reflect their preferences and needs concerning medical care. However, data regarding this topic are lacking.MethodsThis study is a sub study of a prospective, multicenter, observational cohort study among older medical ED patients (≥65 years). Patients or their caregivers were asked about their illness-related concerns during the first stage of the ED visit using a questionnaire. All concerns were categorized into 10 categories, and differences between patients and caregivers, and between age groups were analyzed. Odds Ratios were calculated to determine the association of the concerns for different adverse outcomes.ResultsMost of the 594 included patients (or their caregivers) were concerned (88%) about some aspects of their illness or their need for medical care. The most often reported concerns were about the severity of disease (43.6%), functional decline (9.4%) and dying (5.6%). Caregivers were more frequently concerned than patients (p7 days, loss of independent living and unplanned readmission within 30 days) (OR 2.32; 95%CI: 1.12-4.82). In addition, unspecified concerns were associated with mortality (OR 1.88; 95%CI: 1.09-3.22).ConclusionThe majority of older patients and especially their caregivers are concerned about their medical condition or need for medical care when they visit the ED. These concerns are associated with adverse outcomes and most likely reflect their needs regarding medical care. More attention should be paid to these concerns because they may offer opportunities to reduce anxiety and provide care that is adjusted to their needs.Trial registrationThis study was registered on clinicalTriagls.gov (NCT02946398).
- Published
- 2020
- Full Text
- View/download PDF
7. Concerns of older patients and their caregivers in the emergency department
- Author
-
Zelis, Noortje, primary, Huisman, Sarah E., additional, Mauritz, Arisja N., additional, Buijs, Jacqueline, additional, de Leeuw, Peter W., additional, and Stassen, Patricia M., additional
- Published
- 2020
- Full Text
- View/download PDF
8. The efficacy of Life Review Therapy combined with Memory Specificity Training (LRT-MST) targeting cancer patients in palliative care: A randomized controlled trial
- Author
-
Ernst Thomas Bohlmeijer, Maurice J. D. L. van der Vorst, C. René Leemans, Gitta Kleijn, Annemarie Becker, Anna M.E. Bruynzeel, Pim Cuijpers, Remco de Bree, Bas Steunenberg, Egbert F. Smit, Birgit I. Lissenberg-Witte, Kitty Knipscheer-Kuijpers, Irma M. Verdonck-de Leeuw, Vincent Willemsen, Michiel W. M. van den Brekel, Corien Eeltink, Epidemiology and Data Science, Hematology, Radiation Oncology, Medical oncology, CCA - Cancer Treatment and quality of life, Otolaryngology / Head & Neck Surgery, APH - Mental Health, APH - Methodology, APH - Personalized Medicine, Psychology, Health & Technology, Clinical Psychology, Maxillofacial Surgery (AMC), Academic Centre for Dentistry Amsterdam, Clinical, Neuro- & Developmental Psychology, and APH - Global Health
- Subjects
Male ,Palliative care ,Emotions ,Psychological intervention ,Social Sciences ,lcsh:Medicine ,Anxiety ,law.invention ,Cognition ,Learning and Memory ,Elderly ,0302 clinical medicine ,Randomized controlled trial ,Quality of life ,law ,Neoplasms ,Medicine and Health Sciences ,Psychology ,030212 general & internal medicine ,lcsh:Science ,Depression (differential diagnoses) ,Aged, 80 and over ,Multidisciplinary ,Depression ,Middle Aged ,Treatment Outcome ,030220 oncology & carcinogenesis ,Randomized controlled trials ,Female ,medicine.symptom ,Research Article ,Adult ,medicine.medical_specialty ,Drug Research and Development ,Memory, Episodic ,Research and Analysis Methods ,03 medical and health sciences ,SDG 3 - Good Health and Well-being ,Memory ,Internal medicine ,Mental Health and Psychiatry ,medicine ,Humans ,Clinical Trials ,Aged ,Pharmacology ,Intention-to-treat analysis ,Mood Disorders ,business.industry ,lcsh:R ,Biology and Life Sciences ,Cancer ,medicine.disease ,Health Care ,Psychotherapy ,Age Groups ,People and Places ,Linear Models ,Cognitive Science ,Population Groupings ,lcsh:Q ,Recall (memory) ,Clinical Medicine ,business ,Stress, Psychological ,Neuroscience ,Follow-Up Studies - Abstract
BackgroundThe aim of this study was to evaluate the efficacy of an intervention combining Life Review Therapy (LRT) and Memory Specificity Training (MST) (LRT-MST) to improve ego-integrity and despair among cancer patients in palliative care.MethodsIn this multicentre randomized controlled trial, cancer patients in palliative care were randomized to the intervention group (LRT-MST; n = 55) or waiting-list control group (n = 52). LRT-MST is a 4-session home-based psychological intervention that aims to retrieve specific positive memories, to re-evaluate life events and to reconstruct the story of a patient’s life, including the diagnosis of incurable cancer. Outcome measures were ego-integrity and despair (NEIS), psychological distress, anxiety and depression (HADS), quality of life (EORTC QLQ-C15-PAL), and specificity of the autobiographical memory (AMT). NEIS, HADS and EORTC QLQ-C15-PAL were assessed at baseline (T0), 1 month later (post-treatment; T1), and at 1 month follow-up (T2). AMT was assessed at T0 and T1. Linear mixed models (intention to treat) were used to assess group differences in changes over time. Independent samples t-tests were used to assess group differences at T0, T1, and T2, and effect sizes (ES) were calculated at T1 and T2.ResultsThe course of ego-integrity (not despair) improved significantly over time (p = .007) in the intervention group compared to the waiting-list control group, with moderate, but insignificant, effect sizes at T1 (ES = .42) and T2 (ES = .48). Compliance rate was 69% and total dropout rate was 28%, both primarily related to disease progression and death.ConclusionsLRT-MST seems effective among cancer patients in palliative care to improve the course of ego-integrity.
- Published
- 2018
- Full Text
- View/download PDF
9. The need for information among patients with hematological malignancies: Psychometric analyses of the 62-item Hematology Information Needs Questionnaire (HINQ-62)
- Author
-
Birgit I. Lissenberg-Witte, Frank Stam, Sonja Zweegman, Corien Eeltink, Florence J. van Zuuren, Irma M. Verdonck-de Leeuw, Janneke A. J. Rood, Nephrology, Epidemiology and Data Science, Hematology, Internal medicine, CCA - Cancer Treatment and quality of life, Otolaryngology / Head & Neck Surgery, APH - Mental Health, APH - Methodology, and APH - Personalized Medicine
- Subjects
Male ,Questionnaires ,Health Knowledge, Attitudes, Practice ,Psychometrics ,Cancer Treatment ,Social Sciences ,lcsh:Medicine ,Drug research and development ,Prom ,Clinical trials ,0302 clinical medicine ,Surveys and Questionnaires ,Medicine and Health Sciences ,Content validity ,Psychology ,Medicine ,030212 general & internal medicine ,Prospective cohort study ,lcsh:Science ,Multidisciplinary ,Pharmaceutics ,Phase I clinical investigation ,Hematology ,Middle Aged ,Oncology ,Research Design ,Hematologic Neoplasms ,030220 oncology & carcinogenesis ,Female ,Patient-reported outcome ,Psychosocial ,Phase II clinical investigation ,Research Article ,Clinical psychology ,Patients ,Information needs ,Research and Analysis Methods ,03 medical and health sciences ,Drug Therapy ,Cronbach's alpha ,Humans ,Patient Reported Outcome Measures ,Pharmacology ,Survey Research ,business.industry ,lcsh:R ,Biology and Life Sciences ,Health Care ,Clinical medicine ,lcsh:Q ,business - Abstract
The purpose of this study was to investigate the psychometric characteristics (content validity, internal consistency, and subscale structure) of the Hematology Information Needs Questionnaire-62 (HINQ-62), a patient reported outcome measure (PROM) for assessing the need for information among patients with hematological malignancies (HM-patients). Baseline data were used from a prospective study on the need for information which 336 newly diagnosed HM-patients had completed. In phase 1 (design phase), data from the first 135 patients were used and in phase 2 (validation phase), data from the remaining 201 HM patients were used. Content validity was analyzed by examining irrelevance of items. Items were considered irrelevant if more than 10% of the patients scored totally disagree on that item. The subscale structure of the HINQ-62 was investigated with Factor analysis (FA) (exploratory FA in phase 1 and confirmatory FA in phase 2). Cronbach’s α was computed for the different subscales and >.70 was considered as good internal consistency. None of the 62 HINQ-items were irrelevant. Exploratory FA identified five subscales: “Disease, symptoms, treatment and side-effects”, “Etiology, sleep and physical changes”, “Self-care”, “Medical tests and prognosis”, and “Psychosocial”. Root Mean Square Error of Approximation (RMSEA) among patients was 0.037 in phase 1 and 0.045 in phase 2. The comparative fit index (CFI)/Tucker-Lewis index -non-normed fit index among patients was 0.984/0.983 and 0.948/0.946, in phase 1 and 2 respectively. The internal consistency of the subscales was good, with Cronbach’s α 0.82–0.99. The HINQ is a valid PROM for assessing the need for information among Dutch HM-patients at diagnosis.
- Published
- 2018
- Full Text
- View/download PDF
10. Short-term mortality in older medical emergency patients can be predicted using clinical intuition: A prospective study
- Author
-
Zelis, Noortje, primary, Mauritz, Arisja N., additional, Kuijpers, Lonne I. J., additional, Buijs, Jacqueline, additional, de Leeuw, Peter W., additional, and Stassen, Patricia M., additional
- Published
- 2019
- Full Text
- View/download PDF
11. The need for information among patients with hematological malignancies: Psychometric analyses of the 62-item Hematology Information Needs Questionnaire (HINQ-62)
- Author
-
Rood, Janneke A. J., primary, Lissenberg-Witte, Birgit I., additional, Eeltink, Corien, additional, Stam, Frank, additional, van Zuuren, Florence J., additional, Zweegman, Sonja, additional, and Verdonck- de Leeuw, Irma M., additional
- Published
- 2018
- Full Text
- View/download PDF
12. The efficacy of Life Review Therapy combined with Memory Specificity Training (LRT-MST) targeting cancer patients in palliative care: A randomized controlled trial
- Author
-
Kleijn, Gitta, primary, Lissenberg-Witte, Birgit I., additional, Bohlmeijer, Ernst T., additional, Steunenberg, Bas, additional, Knipscheer-Kuijpers, Kitty, additional, Willemsen, Vincent, additional, Becker, Annemarie, additional, Smit, Egbert F., additional, Eeltink, Corien M., additional, Bruynzeel, Anna M. E., additional, van der Vorst, Maurice, additional, de Bree, Remco, additional, Leemans, C. René, additional, van den Brekel, Michiel W. M., additional, Cuijpers, Pim, additional, and Verdonck-de Leeuw, Irma M., additional
- Published
- 2018
- Full Text
- View/download PDF
13. An In Vivo Study of Self-Regulated Study Sequencing in Introductory Psychology Courses
- Author
-
Paulo F. Carvalho, Benjamin A. Motz, Joshua de Leeuw, Robert L. Goldstone, and David W. Braithwaite
- Subjects
Male ,Research Validity ,Central tendency ,Social Sciences ,Choice Behavior ,Learning and Memory ,Cognition ,Psychology ,media_common ,Introductory psychology ,Multidisciplinary ,4. Education ,05 social sciences ,Blocked Study ,050301 education ,Self-control ,Research Assessment ,Professions ,Medicine ,Female ,Curriculum ,Research Article ,Educational measurement ,Adolescent ,media_common.quotation_subject ,Science ,education ,Decision Making ,Context (language use) ,Research and Analysis Methods ,050105 experimental psychology ,Self-Control ,Human Learning ,Mathematics education ,Learning ,Humans ,0501 psychology and cognitive sciences ,Students ,Demography ,Cognitive Psychology ,Biology and Life Sciences ,Instructors ,People and Places ,Cognitive Science ,Population Groupings ,Educational Measurement ,0503 education ,Neuroscience - Abstract
Study sequence can have a profound influence on learning. In this study we investigated how students decide to sequence their study in a naturalistic context and whether their choices result in improved learning. In the study reported here, 2061 undergraduate students enrolled in an Introductory Psychology course completed an online homework tutorial on measures of central tendency, a topic relevant to an exam that counted towards their grades. One group of students was enabled to choose their own study sequence during the tutorial (Self-Regulated group), while the other group of students studied the same materials in sequences chosen by other students (Yoked group). Students who chose their sequence of study showed a clear tendency to block their study by concept, and this tendency was positively associated with subsequent exam performance. In the Yoked group, study sequence had no effect on exam performance. These results suggest that despite findings that blocked study is maladaptive when assigned by an experimenter, it may actually be adaptive when chosen by the learner in a naturalistic context.
- Published
- 2016
14. Towards Development of Small Molecule Lipid II Inhibitors as Novel Antibiotics
- Author
-
Alexander D. MacKerell, Jing Huang, Robert C. diTargiani, Lei Fang, Timothy J. Opperman, Steven M. Kwasny, Erik de Leeuw, Benedict R. Capacio, M. Ross Pennington, Steven C. Cardinale, Kelly A. Basi, Steven Fletcher, and Jamal Chauhan
- Subjects
0301 basic medicine ,Cytotoxicity ,Staphylococcus ,Antibiotics ,lcsh:Medicine ,Toxicology ,Pathology and Laboratory Medicine ,Biochemistry ,Mice ,Oral administration ,Medicine and Health Sciences ,Staphylococcus Aureus ,lcsh:Science ,Multidisciplinary ,Lipid II ,Antimicrobials ,Drugs ,Pseudomonas Aeruginosa ,Blood Proteins ,Lipids ,Small molecule ,Bacterial Pathogens ,Anti-Bacterial Agents ,3. Good health ,Medical Microbiology ,Microsomes, Liver ,Pathogens ,Cellular Structures and Organelles ,Research Article ,medicine.drug_class ,030106 microbiology ,Enterococcus Faecalis ,Microbial Sensitivity Tests ,Molecular Dynamics Simulation ,Biology ,Microbiology ,03 medical and health sciences ,Cell Walls ,Pharmacokinetics ,In vivo ,Microbial Control ,Pseudomonas ,medicine ,Animals ,Humans ,Microbial Pathogens ,Pharmacology ,Bacteria ,lcsh:R ,Organisms ,Biology and Life Sciences ,Cell Biology ,Surface Plasmon Resonance ,In vitro ,030104 developmental biology ,Antibacterials ,lcsh:Q ,Enterococcus - Abstract
Recently we described a novel di-benzene-pyrylium-indolene (BAS00127538) inhibitor of Lipid II. BAS00127538 (1-Methyl-2,4-diphenyl-6-((1E,3E)-3-(1,3,3-trimethylindolin-2-ylidene)prop-1-en-1-yl)pyryl-1-ium) tetrafluoroborate is the first small molecule Lipid II inhibitor and is structurally distinct from natural agents that bind Lipid II, such as vancomycin. Here, we describe the synthesis and biological evaluation of 50 new analogs of BAS00127538 designed to explore the structure-activity relationships of the scaffold. The results of this study indicate an activity map of the scaffold, identifying regions that are critical to cytotoxicity, Lipid II binding and range of anti-bacterial action. One compound, 6jc48-1, showed significantly enhanced drug-like properties compared to BAS00127538. 6jc48-1 has reduced cytotoxicity, while retaining specific Lipid II binding and activity against Enterococcus spp. in vitro and in vivo. Further, this compound showed a markedly improved pharmacokinetic profile with a half-life of over 13 hours upon intravenous and oral administration and was stable in plasma. These results suggest that scaffolds like that of 6jc48-1 can be developed into small molecule antibiotic drugs that target Lipid II.
- Published
- 2016
15. A dissociation between engagement and learning: Enthusiastic instructions fail to reliably improve performance on a memory task
- Author
-
Motz, Benjamin A., primary, de Leeuw, Joshua R., additional, Carvalho, Paulo F., additional, Liang, Kaley L., additional, and Goldstone, Robert L., additional
- Published
- 2017
- Full Text
- View/download PDF
16. Gender Differentiated Preferences for a Community-Based Conservation Initiative
- Author
-
Aidan Keane, Katherine Homewood, Dickson Kaelo, Heather Gurd, J. Marcus Rowcliffe, Jan W. de Leeuw, and Mohammed Yahya Said
- Subjects
0106 biological sciences ,Male ,Economics ,050204 development studies ,Maasai ,lcsh:Medicine ,Social Sciences ,01 natural sciences ,Choice Behavior ,Geographical Locations ,Residence Characteristics ,Land Use ,Salaries ,Payment ,lcsh:Science ,media_common ,2. Zero hunger ,Mammals ,Sex Characteristics ,Multidisciplinary ,Public economics ,Geography ,Animal Behavior ,Experimental Design ,05 social sciences ,Environmental resource management ,Commerce ,Agriculture ,Ruminants ,Livelihood ,Grazing ,Research Design ,Vertebrates ,language ,Income ,Community-based conservation ,Female ,Research Article ,Conservation of Natural Resources ,Livestock ,media_common.quotation_subject ,Pastoralism ,Wage ,Context (language use) ,Human Geography ,Research and Analysis Methods ,010603 evolutionary biology ,Bovines ,0502 economics and business ,Humans ,Animals ,Disadvantage ,Behavior ,business.industry ,lcsh:R ,Organisms ,Biology and Life Sciences ,15. Life on land ,Kenya ,language.human_language ,Local community ,Labor Economics ,Amniotes ,People and Places ,Africa ,Earth Sciences ,lcsh:Q ,Cattle ,business ,Zoology - Abstract
Community-based conservation (CBC) aims to benefit local people as well as to achieve conservation goals, but has been criticised for taking a simplistic view of “community” and failing to recognise differences in the preferences and motivations of community members. We explore this heterogeneity in the context of Kenya’s conservancies, focussing on the livelihood preferences of men and women living adjacent to the Maasai Mara National Reserve. Using a discrete choice experiment we quantify the preferences of local community members for key components of their livelihoods and conservancy design, differentiating between men and women and existing conservancy members and non-members. While Maasai preference for pastoralism remains strong, non-livestock-based livelihood activities are also highly valued and there was substantial differentiation in preferences between individuals. Involvement with conservancies was generally perceived to be positive, but only if households were able to retain some land for other purposes. Women placed greater value on conservancy membership, but substantially less value on wage income, while existing conservancy members valued both conservancy membership and livestock more highly than did non-members. Our findings suggest that conservancies can make a positive contribution to livelihoods, but care must be taken to ensure that they do not unintentionally disadvantage any groups. We argue that conservation should pay greater attention to individual-level differences in preferences when designing interventions in order to achieve fairer and more sustainable outcomes for members of local communities.
- Published
- 2015
- Full Text
- View/download PDF
17. A dissociation between engagement and learning: Enthusiastic instructions fail to reliably improve performance on a memory task
- Author
-
Paulo F. Carvalho, Benjamin A. Motz, Kaley L Liang, Robert L. Goldstone, and Joshua de Leeuw
- Subjects
Male ,Dissociation (neuropsychology) ,Adolescent ,media_common.quotation_subject ,lcsh:Medicine ,Social Sciences ,050105 experimental psychology ,Young Adult ,Human Learning ,Learning and Memory ,Cognition ,Empirical research ,Recall (Memory) ,Memory task ,Memory ,Memory improvement ,Task Performance and Analysis ,Humans ,Learning ,Psychology ,0501 psychology and cognitive sciences ,lcsh:Science ,media_common ,Motivation ,Behavior ,Enthusiasm ,Multidisciplinary ,Recall ,Spacing effect ,lcsh:R ,05 social sciences ,Cognitive Psychology ,Cognitive technique ,Biology and Life Sciences ,050301 education ,Teachers ,Professions ,Instructors ,Mental Recall ,People and Places ,Cognitive Science ,lcsh:Q ,Female ,Population Groupings ,0503 education ,Research Article ,Neuroscience ,Cognitive psychology - Abstract
Despite widespread assertions that enthusiasm is an important quality of effective teaching, empirical research on the effect of enthusiasm on learning and memory is mixed and largely inconclusive. To help resolve these inconsistencies, we conducted a carefully-controlled laboratory experiment, investigating whether enthusiastic instructions for a memory task would improve recall accuracy. Scripted videos, either enthusiastic or neutral, were used to manipulate the delivery of task instructions. We also manipulated the sequence of learning items, replicating the spacing effect, a known cognitive technique for memory improvement. Although spaced study reliably improved test performance, we found no reliable effect of enthusiasm on memory performance across two experiments. We did, however, find that enthusiastic instructions caused participants to respond to more item prompts, leaving fewer test questions blank, an outcome typically associated with increased task motivation. We find no support for the popular claim that enthusiastic instruction will improve learning, although it may still improve engagement. This dissociation between motivation and learning is discussed, as well as its implications for education and future research on student learning.
- Published
- 2017
- Full Text
- View/download PDF
18. Towards Development of Small Molecule Lipid II Inhibitors as Novel Antibiotics
- Author
-
Chauhan, Jamal, primary, Cardinale, Steven, additional, Fang, Lei, additional, Huang, Jing, additional, Kwasny, Steven M., additional, Pennington, M. Ross, additional, Basi, Kelly, additional, diTargiani, Robert, additional, Capacio, Benedict R., additional, MacKerell, Alexander D., additional, Opperman, Timothy J., additional, Fletcher, Steven, additional, and de Leeuw, Erik P. H., additional
- Published
- 2016
- Full Text
- View/download PDF
19. Psychometric Characteristics of a Patient Reported Outcome Measure on Ego-Integrity and Despair among Cancer Patients
- Author
-
Kleijn, Gitta, primary, Post, Lenneke, additional, Witte, Birgit I., additional, Bohlmeijer, Ernst T., additional, Westerhof, Gerben J., additional, Cuijpers, Pim, additional, and Verdonck-de Leeuw, Irma M., additional
- Published
- 2016
- Full Text
- View/download PDF
20. A Randomised Controlled Trial of Consent Procedures for the Use of Residual Tissues for Medical Research: Preferences of and Implications for Patients, Research and Clinical Practice
- Author
-
Rebers, S., primary, Vermeulen, E., additional, Brandenburg, A. P., additional, Stoof, T. J., additional, Zupan-Kajcovski, B., additional, Bos, W. J. W., additional, Jonker, M. J., additional, Bax, C. J., additional, van Driel, W. J., additional, Verwaal, V. J., additional, van den Brekel, M. W., additional, Grutters, J. C., additional, Tupker, R. A., additional, Plusjé, L., additional, de Bree, R., additional, Schagen van Leeuwen, J. H., additional, Vermeulen, E. G. J., additional, de Leeuw, R. A., additional, Brohet, R. M., additional, Aaronson, N. K., additional, Van Leeuwen, F. E., additional, and Schmidt, M. K., additional
- Published
- 2016
- Full Text
- View/download PDF
21. Gender Differentiated Preferences for a Community-Based Conservation Initiative
- Author
-
Keane, Aidan, primary, Gurd, Heather, additional, Kaelo, Dickson, additional, Said, Mohammed Y., additional, de Leeuw, Jan, additional, Rowcliffe, J. Marcus, additional, and Homewood, Katherine, additional
- Published
- 2016
- Full Text
- View/download PDF
22. An In Vivo Study of Self-Regulated Study Sequencing in Introductory Psychology Courses
- Author
-
Carvalho, Paulo F., primary, Braithwaite, David W., additional, de Leeuw, Joshua R., additional, Motz, Benjamin A., additional, and Goldstone, Robert L., additional
- Published
- 2016
- Full Text
- View/download PDF
23. Functional gene group analysis indicates no role for heterotrimeric G proteins in cognitive ability
- Author
-
David Cherry McLachlan Liewald, Lawrence J. Whalley, Danielle Posthuma, A Payton, Michael A. Horan, Gail Davies, Timothy C. Bates, Ian J. Deary, John M. Starr, William E R Ollier, Leone C A Craig, W. David Hill, Neil Pendleton, Christiaan de Leeuw, Functional Genomics, Complex Trait Genetics, Neuroscience Campus Amsterdam - Brain Mechanisms in Health & Disease, Human genetics, and NCA - Brain mechanisms in health and disease
- Subjects
Male ,Intelligence ,lcsh:Medicine ,Social and Behavioral Sciences ,0302 clinical medicine ,Cognition ,Heterotrimeric G protein ,Molecular Cell Biology ,Signaling in Cellular Processes ,Psychology ,lcsh:Science ,Genetics ,Aged, 80 and over ,Intelligence Tests ,0303 health sciences ,Multidisciplinary ,Statistics ,Middle Aged ,Heterotrimeric GTP-Binding Proteins ,Female ,Research Article ,Signal Transduction ,Psychometrics ,G protein ,Cognitive Neuroscience ,Single-nucleotide polymorphism ,Biology ,Biostatistics ,Polymorphism, Single Nucleotide ,Molecular Genetics ,03 medical and health sciences ,Neuropsychology ,Genetic variation ,Genome-Wide Association Studies ,SNP ,Humans ,Gene ,Genetic Association Studies ,030304 developmental biology ,Aged ,Human intelligence ,lcsh:R ,Cognitive Psychology ,Human Genetics ,G-Protein Signaling ,Human Intelligence ,lcsh:Q ,030217 neurology & neurosurgery ,Mathematics ,Neuroscience - Abstract
Previous functional gene group analyses implicated common single nucleotide polymorphisms (SNPs) in heterotrimeric G protein coding genes as being associated with differences in human intelligence. Here, we sought to replicate this finding using five independent cohorts of older adults including current IQ and childhood IQ, and using both gene- and SNP-based analytic strategies. No significant associations were found between variation in heterotrimeric G protein genes and intelligence in any cohort at either of the two time points. These results indicate that, whereas G protein systems are important in cognition, common genetic variation in these genes is unlikely to be a substantial influence on human intelligence differences. © 2014 Hill et al.
- Published
- 2014
- Full Text
- View/download PDF
24. Impact of serum high mobility group box 1 and soluble receptor for advanced glycation end-products on subclinical atherosclerosis in patients with granulomatosis with polyangiitis
- Author
-
Marc Bijl, Mirjan M. van Timmeren, Karina de Leeuw, Cees G. M. Kallenberg, Pieter C. Limburg, Johanna Westra, Alexandre Wagner Silva de Souza, Coen A. Stegeman, Univ Groningen, Martini Hosp, Universidade Federal de São Paulo (UNIFESP), Groningen Kidney Center (GKC), Translational Immunology Groningen (TRIGR), and Groningen Institute for Organ Transplantation (GIOT)
- Subjects
Male ,ANCA-ASSOCIATED VASCULITIS ,STRESS ,Atorvastatin ,Receptor for Advanced Glycation End Products ,PROTEIN ,lcsh:Medicine ,Autoimmunity ,Pathology and Laboratory Medicine ,Biochemistry ,Vascular Medicine ,Umbilical vein ,ACTIVATION ,Glycation ,Hyperlipidemia ,Medicine and Health Sciences ,HMGB1 Protein ,Receptors, Immunologic ,HYPERLIPIDEMIA ,lcsh:Science ,Multidisciplinary ,biology ,Middle Aged ,Clinical Laboratory Sciences ,Prednisolone ,cardiovascular system ,Female ,medicine.symptom ,Granulomatosis with polyangiitis ,medicine.drug ,Research Article ,Vasculitis ,medicine.medical_specialty ,Immunology ,Cardiology ,Inflammation ,chemical and pharmacologic phenomena ,HMGB1 ,Autoimmune Diseases ,HUMAN ENDOTHELIAL-CELLS ,WEGENERS-GRANULOMATOSIS ,INFLAMMATION ,Rheumatology ,Diagnostic Medicine ,Internal medicine ,medicine ,Human Umbilical Vein Endothelial Cells ,Humans ,Pyrroles ,cardiovascular diseases ,DISEASE CHARACTERISTICS ,business.industry ,Acute Cardiovascular Problems ,lcsh:R ,Granulomatosis with Polyangiitis ,Biology and Life Sciences ,medicine.disease ,Atherosclerosis ,Endocrinology ,Solubility ,Heptanoic Acids ,biology.protein ,Clinical Immunology ,lcsh:Q ,Hydroxymethylglutaryl-CoA Reductase Inhibitors ,business ,HMGB1 LEVELS ,Biomarkers - Abstract
GUIDE Institute Jan Kornelis de Cock Institute The objective of this study was to evaluate whether levels of high mobility group box 1 (HMGB1) in granulomatosis with polyangiitis (GPA) patients are associated with carotid atherosclerosis, related to levels of soluble receptor for advanced glycation end-products (sRAGE) and influenced by immunosuppressive or lipid-lowering therapy. Twenty-three GPA patients and 20 controls were evaluated for HMGB1- and sRAGE levels and for carotid atherosclerosis using ultrasound to determine intima-media thickness (IMT). in vitro the effect of atorvastatin on the production of HMGB1 by lipopolysaccharide (LPS)-stimulated human umbilical vein endothelial cells (HUVEC) was assessed. Serum HMGB1 and sRAGE levels did not differ between patients and controls. A negative correlation was found between sRAGE and maximum IMT but HMGB1 and carotid IMT were not related. HMGB1 levels were reduced in GPA patients on statins and prednisolone. in vitro, atorvastatin reduced HMGB1 levels in supernatants of activated HUVEC. in conclusion, carotid IMT is inversely correlated with sRAGE levels but not with HMGB1 levels. Statins and prednisolone are associated with reduced serum HMGB1 levels and atorvastatin decreases HMGB1 release by activated HUVEC in vitro, indicating an additional anti-inflammatory effect of statins. Univ Groningen, Univ Med Ctr Groningen, Dept Rheumatol & Clin Immunol, Groningen, Netherlands Univ Groningen, Univ Med Ctr Groningen, Dept Pathol & Med Biol, Groningen, Netherlands Univ Groningen, Univ Med Ctr Groningen, Dept Lab Med, Groningen, Netherlands Univ Groningen, Univ Med Ctr Groningen, Div Nephrol, Dept Internal Med, Groningen, Netherlands Martini Hosp, Groningen, Netherlands Universidade Federal de São Paulo, Escola Paulista Med Unifesp EPM, Div Rheumatol, São Paulo, Brazil Universidade Federal de São Paulo, Escola Paulista Med Unifesp EPM, Div Rheumatol, São Paulo, Brazil Web of Science
- Published
- 2014
25. Spotting East African mammals in open savannah from space
- Author
-
Andrew K. Skidmore, Zheng Yang, Jan W. de Leeuw, Tiejun Wang, Jim Freer, Mohammed Yahya Said, Department of Natural Resources, UT-I-ITC-FORAGES, and Faculty of Geo-Information Science and Earth Observation
- Subjects
Satellite Imagery ,Computer and Information Sciences ,Aerial survey ,Computer science ,Imaging Techniques ,Science ,Population ,Population Dynamics ,Wildlife ,Research and Analysis Methods ,Geoinformatics ,Image Processing, Computer-Assisted ,Photography ,Animals ,Satellite imagery ,education ,Conservation Science ,Mammals ,Hybrid image ,education.field_of_study ,Multidisciplinary ,Remote Sensing Imagery ,Pixel ,Contextual image classification ,Ecology ,business.industry ,Ecology and Environmental Sciences ,Biology and Life Sciences ,Pattern recognition ,Censuses ,Biodiversity ,Spotting ,Africa, Eastern ,Space Flight ,Kenya ,ITC-ISI-JOURNAL-ARTICLE ,Medicine ,Artificial intelligence ,business ,ITC-GOLD ,Research Article - Abstract
Knowledge of population dynamics is essential for managing and conserving wildlife. Traditional methods of counting wild animals such as aerial survey or ground counts not only disturb animals, but also can be labour intensive and costly. New, commercially available very high-resolution satellite images offer great potential for accurate estimates of animal abundance over large open areas. However, little research has been conducted in the area of satellite-aided wildlife census, although computer processing speeds and image analysis algorithms have vastly improved. This paper explores the possibility of detecting large animals in the open savannah of Maasai Mara National Reserve, Kenya from very high-resolution GeoEye-1 satellite images. A hybrid image classification method was employed for this specific purpose by incorporating the advantages of both pixel-based and object-based image classification approaches. This was performed in two steps: firstly, a pixel-based image classification method, i.e., artificial neural network was applied to classify potential targets with similar spectral reflectance at pixel level; and then an object-based image classification method was used to further differentiate animal targets from the surrounding landscapes through the applications of expert knowledge. As a result, the large animals in two pilot study areas were successfully detected with an average count error of 8.2%, omission error of 6.6% and commission error of 13.7%. The results of the study show for the first time that it is feasible to perform automated detection and counting of large wild animals in open savannahs from space, and therefore provide a complementary and alternative approach to the conventional wildlife survey techniques.
- Published
- 2014
26. Post-stroke epilepsy in young adults: a long-term follow-up study
- Author
-
Renate Arntz, Loes Rutten-Jacobs, Noortje Maaijwee, Hennie Schoonderwaldt, Lucille Dorresteijn, Ewoud van Dijk, and Frank-Erik de Leeuw
- Subjects
Male ,Pediatrics ,lcsh:Medicine ,Kaplan-Meier Estimate ,Cardiovascular ,Cohort Studies ,Epilepsy ,Surveys and Questionnaires ,Prospective Studies ,Young adult ,Prospective cohort study ,lcsh:Science ,Stroke ,Multidisciplinary ,Incidence (epidemiology) ,Middle Aged ,Hemorrhagic Stroke ,Neurology ,Ischemic Attack, Transient ,Anesthesia ,Observational Studies ,Medicine ,Female ,Research Article ,Adult ,Risk ,medicine.medical_specialty ,Adolescent ,Clinical Research Design ,Cerebrovascular Diseases ,DCN NN - Brain networks and neuronal communication NCEBP 9 - Mental health ,Seizures ,medicine ,Humans ,Transient Ischemic Attacks ,cardiovascular diseases ,Cerebral Hemorrhage ,Proportional Hazards Models ,Ischemic Stroke ,Intracerebral hemorrhage ,Survey Research ,Proportional hazards model ,business.industry ,lcsh:R ,medicine.disease ,nervous system diseases ,Relative risk ,Quality of Life ,lcsh:Q ,business ,Follow-Up Studies - Abstract
Contains fulltext : 117449.pdf (Publisher’s version ) (Open Access) BACKGROUND: Little is known about the incidence and risk of seizures after stroke in young adults. Especially in the young seizures might dramatically influence prognosis and quality of life. We therefore investigated the long-term incidence and risk of post-stroke epilepsy in young adults with a transient ischemic attack (TIA), ischemic stroke (IS) or intracerebral hemorrhage (ICH). METHODS AND FINDINGS: We performed a prospective cohort study among 697 consecutive patients with a first-ever TIA, IS or ICH, aged 18-50 years, admitted to our hospital between 1-1-1980 till 1-11-2010. The occurrence of epilepsy was assessed by standardized questionnaires and verified by a neurologist. Cumulative risks were estimated with Kaplan-Meier analysis. Cox proportional hazard models were used to calculate relative risks. After mean follow-up of 9.1 years (SD 8.2), 79 (11.3%) patients developed post-stroke epilepsy and 39 patients (5.6%) developed epilepsy with recurrent seizures. Patients with an initial late seizure more often developed recurrent seizures than patients with an initial early seizure. Cumulative risk of epilepsy was 31%, 16% and 5% for patients with an ICH, IS and TIA respectively (Logrank test ICH and IS versus TIA p
- Published
- 2013
27. Meaning making in cancer survivors: a focus group study
- Author
-
Cornelia F. van Uden-Kraan, Joel Vos, Pim Cuijpers, Nadia van der Spek, Irma M. Verdonck-de Leeuw, William Breitbart, Rob A. E. M. Tollenaar, Otolaryngology / Head & Neck Surgery, EMGO - Mental health, CCA - Quality of life, Clinical Psychology, and EMGO+ - Mental Health
- Subjects
Adult ,Male ,Psychotherapist ,Existentialism ,lcsh:Medicine ,Disease ,Life Change Events ,Interpersonal relationship ,Breast cancer ,SDG 3 - Good Health and Well-being ,Neoplasms ,Adaptation, Psychological ,Meaning-making ,medicine ,Humans ,Psychology ,Interpersonal Relations ,Meaning (existential) ,Survivors ,lcsh:Science ,Aged ,Netherlands ,Multidisciplinary ,business.industry ,fungi ,lcsh:R ,food and beverages ,Cancer ,Health sciences ,Focus Groups ,Middle Aged ,Resilience, Psychological ,medicine.disease ,Focus group ,Female ,lcsh:Q ,business ,Goals ,Research Article - Abstract
BACKGROUND:Confrontation with a life-threatening disease like cancer can evoke existential distress, which can trigger a search for meaning in people after having survived this disease.METHODS:In an effort to gain more insight in the meaning making process, we conducted four focus groups with 23 cancer survivors on this topic. Participants responded to questions about experienced meaning making, perceived changes in meaning making after cancer and the perceived need for help in this area.RESULTS:Most frequently mentioned meaning making themes were relationships and experiences. We found that, in general, cancer survivors experienced enhanced meaning after cancer through relationships, experiences, resilience, goal-orientation and leaving a legacy. Some participants, however, also said to have (also) experienced a loss of meaning in their lives through experiences, social roles, relationships and uncertainties about the future.CONCLUSIONS:The results indicated that there is a group of cancer survivors that has succeeded in meaning making efforts, and experienced sometimes even more meaning in life than before diagnosis, while there is also a considerable group of survivors that struggled with meaning making and has an unmet need for help with that. The results of this study contribute to develop a meaning centered intervention for cancer survivors.
- Published
- 2013
- Full Text
- View/download PDF
28. Combining next-generation sequencing and microarray technology into a transcriptomics approach for the non-model organism Chironomus riparius
- Author
-
Mark de Jong, Marino Marinković, Martijs J. Jonker, Michiel H. S. Kraak, Timo M. Breit, Wim Admiraal, Wim C. de Leeuw, Green Life Sciences, RNA Biology & Applied Bioinformatics (SILS, FNWI), and Aquatic Environmental Ecology (IBED, FNWI)
- Subjects
Microarrays ,ved/biology.organism_classification_rank.species ,lcsh:Medicine ,010501 environmental sciences ,Toxicology ,01 natural sciences ,Genome ,Transcriptomes ,Databases, Genetic ,Genomic library ,lcsh:Science ,Oligonucleotide Array Sequence Analysis ,Chironomus riparius ,Genetics ,Expressed Sequence Tags ,Freshwater Ecology ,0303 health sciences ,Expressed sequence tag ,Comparative Genomic Hybridization ,Multidisciplinary ,Ecology ,Systems Biology ,Genomics ,Functional Genomics ,DNA microarray ,Research Article ,Genetic Toxicology ,Molecular Sequence Data ,Computational biology ,Biology ,DNA sequencing ,Chironomidae ,03 medical and health sciences ,Genome Analysis Tools ,Animals ,RNA, Messenger ,030304 developmental biology ,0105 earth and related environmental sciences ,Gene Library ,Sequence Assembly Tools ,Base Sequence ,Models, Genetic ,ved/biology ,Gene Expression Profiling ,lcsh:R ,Computational Biology ,Sequence Analysis, DNA ,Microarray Analysis ,Gene expression profiling ,Gene chip analysis ,lcsh:Q ,Transcriptome ,Genome Expression Analysis - Abstract
Whole-transcriptome gene-expression analyses are commonly performed in species that have a sequenced genome and for which microarrays are commercially available. To do such analyses in species with no or limited genome data, i.e. non-model organisms, necessary transcriptomics resources, i.e. an annotated transcriptome and a validated gene-expression microarray, must first be developed. The aim of the present study was to establish an advanced approach for developing transcriptomics resources for non-model organisms by combining next-generation sequencing (NGS) and microarray technology. We applied our approach to the non-biting midge Chironomus riparius, an ecologically relevant species that is widely used in sediment ecotoxicity testing. We sampled extensively covering all C. riparius developmental stages as well as toxicant exposed larvae and obtained from a normalized cDNA library 1.5 M NGS reads totalling 501 Mbp. Using the NGS data we developed transcriptomics resources in several steps. First, we designed 844 k probes directly on the NGS reads, as well as 76 k probes targeting expressed sequence tags of related species. These probes were tested for their affinity to C. riparius DNA and mRNA, by performing two biological experiments with a 1 M probe-selection microarray that contained the entire probe-library. Subsequently, the 1.5 M NGS reads were assembled into 23,709 isotigs and 135,082 singletons, which were associated to approximately 55 k, respectively, approximately 61 k gene ontology terms and which corresponded together to 22,593 unique protein accessions. An algorithm was developed that took the assembly and the probe affinities to DNA and mRNA into account, what resulted in 59 k highly-reliable probes that targeted uniquely 95% of the isotigs and 18% of the singletons. Concluding, our approach allowed the development of high-quality transcriptomics resources for C. riparius, and is applicable to any non-model organism. It is expected, that these resources will advance ecotoxicity testing with C. riparius as whole-transcriptome gene-expression analysis are now possible with this species.
- Published
- 2012
29. Lower Ipsilateral Hippocampal Integrity after Ischemic Stroke in Young Adults: A Long-Term Follow-Up Study
- Author
-
Schaapsmeerders, Pauline, primary, Tuladhar, Anil M., additional, Maaijwee, Noortje A. M., additional, Rutten-Jacobs, Loes C. A., additional, Arntz, Renate M., additional, Schoonderwaldt, Hennie C., additional, Dorresteijn, Lucille D. A., additional, van Dijk, Ewoud J., additional, Kessels, Roy P. C., additional, and de Leeuw, Frank-Erik, additional
- Published
- 2015
- Full Text
- View/download PDF
30. Coexistence of flexibility and stability of proteins: an equation of state
- Author
-
Shlomi Reuveni, Joseph Klafter, Marina de Leeuw, and Rony Granek
- Subjects
Biophysics/Theory and Simulation ,Models, Molecular ,Protein Folding ,Equation of state ,Protein Conformation ,Biophysics ,Biophysics/Protein Folding ,Normal Distribution ,Stability (learning theory) ,lcsh:Medicine ,Protein Engineering ,Fractal dimension ,Physics/Interdisciplinary Physics ,Catalysis ,symbols.namesake ,Fractal ,Animals ,Humans ,Statistical physics ,Amino Acids ,Databases, Protein ,lcsh:Science ,Physics ,Quantitative Biology::Biomolecules ,Models, Statistical ,Multidisciplinary ,lcsh:R ,Biophysics/Structural Genomics ,Physics/Condensed Matter ,Proteins ,computer.file_format ,Protein Data Bank ,Enzyme structure ,Fractals ,symbols ,lcsh:Q ,Gaussian network model ,computer ,Research Article ,Marginal stability - Abstract
We consider a recently suggested "equation of state" for natively folded proteins, and verify its validity for a set of about 5800 proteins. The equation is based on a fractal viewpoint of proteins, on a generalization of the Landau-Peierls instability, and on a marginal stability criterion. The latter allows for coexistence of stability and flexibility of proteins, which is required for their proper function. The equation of state relates the protein fractal dimension d(f), its spectral dimension d(s), and the number of amino acids N. Using structural data from the protein data bank (PDB) and the Gaussian network model (GNM), we compute d(f) and d(s) for the entire set and demonstrate that the equation of state is well obeyed. Addressing the fractal properties and making use of the equation of state may help to engineer biologically inspired catalysts.
- Published
- 2009
31. The M235T polymorphism in the AGT gene and CHD risk: evidence of a Hardy-Weinberg equilibrium violation and publication bias in a meta-analysis
- Author
-
Peter W. de Leeuw, Diederick E. Grobbee, Michiel L. Bots, Mohammad Hadi Zafarmand, Yvonne T. van der Schouw, and Other departments
- Subjects
Funnel plot ,medicine.medical_specialty ,Angiotensinogen ,Cardiovascular Disorders/Coronary Artery Disease ,lcsh:Medicine ,Coronary Disease ,Genetics and Genomics/Complex Traits ,Cohort Studies ,Risk Factors ,Internal medicine ,Genetic model ,Medicine ,Humans ,Genetic Predisposition to Disease ,lcsh:Science ,Genetics and Genomics/Genetics of Disease ,Proportional Hazards Models ,Genetics ,Multidisciplinary ,Polymorphism, Genetic ,business.industry ,Proportional hazards model ,Hazard ratio ,lcsh:R ,Case-control study ,Publication bias ,Odds ratio ,Middle Aged ,Meta-analysis ,Case-Control Studies ,lcsh:Q ,Female ,business ,Cardiovascular Disorders/Myocardial Infarction ,Research Article - Abstract
Background The M235T polymorphism in the AGT gene has been related to an increased risk of hypertension. This finding may also suggest an increased risk of coronary heart disease (CHD). Methodology/Principal Findings A case-cohort study was conducted in 1,732 unrelated middle-age women (210 CHD cases and 1,522 controls) from a prospective cohort of 15,236 initially healthy Dutch women. We applied a Cox proportional hazards model to study the association of the polymorphism with acute myocardial infarction (AMI) (n = 71) and CHD. In the case-cohort study, no increased risk for CHD was found under the additive genetic model (hazard ratio [HR] = 1.20; 95% confidence interval [CI], 0.86 to 1.68; P = 0.28). This result was not changed by adjustment (HR = 1.17; 95% CI, 0.83 to 1.64; P = 0.38) nor by using dominant, recessive and pairwise genetic models. Analyses for AMI risk under the additive genetic model also did not show any statistically significant association (crude HR = 1.14; 95% CI, 0.93 to 1.39; P = 0.20). To evaluate the association, a comprehensive systematic review and meta-analysis were undertaken of all studies published up to February 2007 (searched through PubMed/MEDLINE, Web of Science and EMBASE). The meta-analysis (38 studies with 13284 cases and 18722 controls) showed a per-allele odds ratio (OR) of 1.08 (95% CI, 1.01 to 1.15; P = 0.02). Moderate to large levels of heterogeneity were identified between studies. Hardy-Weinberg equilibrium (HWE) violation and the mean age of cases were statistically significant sources of the observed variation. In a stratum of non-HWE violation studies, there was no effect. An asymmetric funnel plot, the Egger's test (P = 0.066), and the Begg-Mazumdar test (P = 0.074) were all suggestive of the presence of publication bias. Conclusions/Significance The pooled OR of the present meta-analysis, including our own data, presented evidence that there is an increase in the risk of CHD conferred by the M235T variant of the AGT gene. However, the relevance of this weakly positive overall association remains uncertain because it may be due to various residual biases, including HWE-violation and publication biases.
- Published
- 2008
32. Spotting East African Mammals in Open Savannah from Space
- Author
-
Yang, Zheng, primary, Wang, Tiejun, additional, Skidmore, Andrew K., additional, de Leeuw, Jan, additional, Said, Mohammed Y., additional, and Freer, Jim, additional
- Published
- 2014
- Full Text
- View/download PDF
33. Exposure to Movie Reckless Driving in Early Adolescence Predicts Reckless, but Not Inattentive Driving
- Author
-
Kostermans, Evelien, primary, Stoolmiller, Mike, additional, de Leeuw, Rebecca N. H., additional, Engels, Rutger C. M. E., additional, and Sargent, James D., additional
- Published
- 2014
- Full Text
- View/download PDF
34. Impact of Serum High Mobility Group Box 1 and Soluble Receptor for Advanced Glycation End-Products on Subclinical Atherosclerosis in Patients with Granulomatosis with Polyangiitis
- Author
-
Souza, Alexandre W. S. de, primary, de Leeuw, Karina, additional, van Timmeren, Mirjan M., additional, Limburg, Pieter C., additional, Stegeman, Coen A., additional, Bijl, Marc, additional, Westra, Johanna, additional, and Kallenberg, Cees G. M., additional
- Published
- 2014
- Full Text
- View/download PDF
35. Development and Validation of a Prediction Model for Tube Feeding Dependence after Curative (Chemo-) Radiation in Head and Neck Cancer
- Author
-
Wopken, Kim, primary, Bijl, Hendrik P., additional, van der Schaaf, Arjen, additional, Christianen, Miranda E., additional, Chouvalova, Olga, additional, Oosting, Sjoukje F., additional, van der Laan, Bernard F. A. M., additional, Roodenburg, Jan L. N., additional, Leemans, C. René, additional, Slotman, Ben J., additional, Doornaert, Patricia, additional, Steenbakkers, Roel J. H. M., additional, Verdonck-de Leeuw, Irma M., additional, and Langendijk, Johannes A., additional
- Published
- 2014
- Full Text
- View/download PDF
36. Functional Gene Group Analysis Indicates No Role for Heterotrimeric G Proteins in Cognitive Ability
- Author
-
Hill, W. David, primary, de Leeuw, Christiaan, additional, Davies, Gail, additional, Liewald, David Cherry McLachlan, additional, Payton, Anthony, additional, Craig, Leone C. A., additional, Whalley, Lawrence J., additional, Horan, Mike, additional, Ollier, William, additional, Starr, John M., additional, Pendleton, Neil, additional, Posthuma, Danielle, additional, Bates, Timothy C., additional, and Deary, Ian J., additional
- Published
- 2014
- Full Text
- View/download PDF
37. High Incidence of Diabetes after Stroke in Young Adults and Risk of Recurrent Vascular Events: The FUTURE Study
- Author
-
Rutten-Jacobs, Loes C. A., primary, Keurlings, Pim A. J., additional, Arntz, Renate M., additional, Maaijwee, Noortje A. M., additional, Schoonderwaldt, Henny C., additional, Dorresteijn, Lucille D., additional, van der Vlugt, Maureen J., additional, van Dijk, Ewoud J., additional, and de Leeuw, Frank-Erik, additional
- Published
- 2014
- Full Text
- View/download PDF
38. Meaning Making in Cancer Survivors: A Focus Group Study
- Author
-
van der Spek, Nadia, primary, Vos, Joel, additional, van Uden-Kraan, Cornelia F., additional, Breitbart, William, additional, Tollenaar, Rob A. E. M., additional, Cuijpers, Pim, additional, and Verdonck-de Leeuw, Irma M., additional
- Published
- 2013
- Full Text
- View/download PDF
39. Lock, Stock and Two Different Barrels: Comparing the Genetic Composition of Morphotypes of the Indo-Pacific Sponge Xestospongia testudinaria
- Author
-
Swierts, Thomas, primary, Peijnenburg, Katja T. C. A., additional, de Leeuw, Christiaan, additional, Cleary, Daniel F. R., additional, Hörnlein, Christine, additional, Setiawan, Edwin, additional, Wörheide, Gert, additional, Erpenbeck, Dirk, additional, and de Voogd, Nicole J., additional
- Published
- 2013
- Full Text
- View/download PDF
40. Default Mode Network Connectivity in Stroke Patients
- Author
-
Tuladhar, Anil Man, primary, Snaphaan, Liselore, additional, Shumskaya, Elena, additional, Rijpkema, Mark, additional, Fernandez, Guillén, additional, Norris, David G., additional, and de Leeuw, Frank-Erik, additional
- Published
- 2013
- Full Text
- View/download PDF
41. Post-Stroke Epilepsy in Young Adults: A Long-Term Follow-Up Study
- Author
-
Arntz, Renate, primary, Rutten-Jacobs, Loes, additional, Maaijwee, Noortje, additional, Schoonderwaldt, Hennie, additional, Dorresteijn, Lucille, additional, van Dijk, Ewoud, additional, and de Leeuw, Frank-Erik, additional
- Published
- 2013
- Full Text
- View/download PDF
42. Combining Next-Generation Sequencing and Microarray Technology into a Transcriptomics Approach for the Non-Model Organism Chironomus riparius
- Author
-
Marinković, Marino, primary, de Leeuw, Wim C., additional, de Jong, Mark, additional, Kraak, Michiel H. S., additional, Admiraal, Wim, additional, Breit, Timo M., additional, and Jonker, Martijs J., additional
- Published
- 2012
- Full Text
- View/download PDF
43. Protective Efficacy of Newcastle Disease Virus Expressing Soluble Trimeric Hemagglutinin against Highly Pathogenic H5N1 Influenza in Chickens and Mice
- Author
-
Cornelissen, Lisette A. H. M., primary, de Leeuw, Olav S., additional, Tacken, Mirriam G., additional, Klos, Heleen C., additional, de Vries, Robert P., additional, de Boer-Luijtze, Els A., additional, van Zoelen-Bos, Diana J., additional, Rigter, Alan, additional, Rottier, Peter J. M., additional, Moormann, Rob J. M., additional, and de Haan, Cornelis A. M., additional
- Published
- 2012
- Full Text
- View/download PDF
44. Protective Efficacy of Newcastle Disease Virus Expressing Soluble Trimeric Hemagglutinin against Highly Pathogenic H5N1 Influenza in Chickens and Mice
- Author
-
Alan Rigter, Robert P. de Vries, Els A. de Boer-Luijtze, Heleen C. Klos, Rob J. M. Moormann, Mirriam G.J. Tacken, Peter J. M. Rottier, Lisette A. H. M. Cornelissen, Diana J. van Zoelen-Bos, Olav S. de Leeuw, Cornelis A. M. de Haan, Strategic Infection Biology, and Dep Infectieziekten Immunologie
- Subjects
Viral Diseases ,viruses ,animal diseases ,lcsh:Medicine ,Hemagglutinin Glycoproteins, Influenza Virus ,medicine.disease_cause ,Biochemistry ,Wageningen Bioveterinary Research ,Mice ,Emerging Viral Diseases ,Zoonoses ,Influenza A virus ,recombinant ,lcsh:Science ,Avian influenza A viruses ,Recombination, Genetic ,Vaccines ,Mice, Inbred BALB C ,fowlpox virus ,Multidisciplinary ,biology ,Zoonotic Diseases ,Viral Vaccine ,Vaccination ,Immunizations ,Recombinant Proteins ,Virus Shedding ,Virology & Molecular Biology ,Treatment Outcome ,Veterinary Diseases ,embryonic structures ,Medicine ,Infectious diseases ,Female ,Structural Proteins ,Public Health ,CVI - Division Virology ,Research Article ,respiratory-tract ,animal structures ,Infectious Disease Control ,Animal Types ,Newcastle disease virus ,Hemagglutinin (influenza) ,immunization ,Microbiology ,Newcastle disease ,Virus ,CVI - Divisie Virologie ,Orthomyxoviridae Infections ,Virology ,Vaccine Development ,fusion protein ,medicine ,Animals ,Humans ,Laboratory Animals ,neutralizing antibodies ,lethal challenge ,Viral shedding ,Biology ,vaccine vectors ,Influenza A Virus, H5N1 Subtype ,lcsh:R ,Immunity ,Proteins ,Viral Vaccines ,Veterinary Virology ,biochemical phenomena, metabolism, and nutrition ,Viral membrane ,biology.organism_classification ,Influenza ,Influenza A virus subtype H5N1 ,Virologie & Moleculaire Biologie ,Transmembrane Proteins ,virulence ,Solubility ,Influenza in Birds ,Antibody Formation ,biology.protein ,lcsh:Q ,Clinical Immunology ,Veterinary Science ,avian influenza ,Protein Multimerization ,Chickens - Abstract
BACKGROUND: Highly pathogenic avian influenza virus (HPAIV) causes a highly contagious often fatal disease in poultry, resulting in significant economic losses in the poultry industry. HPAIV H5N1 also poses a major public health threat as it can be transmitted directly from infected poultry to humans. One effective way to combat avian influenza with pandemic potential is through the vaccination of poultry. Several live vaccines based on attenuated Newcastle disease virus (NDV) that express influenza hemagglutinin (HA) have been developed to protect chickens or mammalian species against HPAIV. However, the zoonotic potential of NDV raises safety concerns regarding the use of live NDV recombinants, as the incorporation of a heterologous attachment protein may result in the generation of NDV with altered tropism and/or pathogenicity. METHODOLOGY/PRINCIPAL FINDINGS: In the present study we generated recombinant NDVs expressing either full length, membrane-anchored HA of the H5 subtype (NDV-H5) or a soluble trimeric form thereof (NDV-sH5(3)). A single intramuscular immunization with NDV-sH5(3) or NDV-H5 fully protected chickens against disease after a lethal challenge with H5N1 and reduced levels of virus shedding in tracheal and cloacal swabs. NDV-sH5(3) was less protective than NDV-H5 (50% vs 80% protection) when administered via the respiratory tract. The NDV-sH5(3) was ineffective in mice, regardless of whether administered oculonasally or intramuscularly. In this species, NDV-H5 induced protective immunity against HPAIV H5N1, but only after oculonasal administration, despite the poor H5-specific serum antibody response it elicited. CONCLUSIONS/SIGNIFICANCE: Although NDV expressing membrane anchored H5 in general provided better protection than its counterpart expressing soluble H5, chickens could be fully protected against a lethal challenge with H5N1 by using the latter NDV vector. This study thus provides proof of concept for the use of recombinant vector vaccines expressing a soluble form of a heterologous viral membrane protein. Such vectors may be advantageous as they preclude the incorporation of heterologous membrane proteins into the viral vector particles.
- Published
- 2012
- Full Text
- View/download PDF
45. Coexistence of Flexibility and Stability of Proteins: An Equation of State
- Author
-
de Leeuw, Marina, primary, Reuveni, Shlomi, additional, Klafter, Joseph, additional, and Granek, Rony, additional
- Published
- 2009
- Full Text
- View/download PDF
46. The M235T Polymorphism in the AGT Gene and CHD Risk: Evidence of a Hardy-Weinberg Equilibrium Violation and Publication Bias in a Meta-Analysis
- Author
-
Zafarmand, Mohammad Hadi, primary, van der Schouw, Yvonne T., additional, Grobbee, Diederick E., additional, de Leeuw, Peter W., additional, and Bots, Michiel L., additional
- Published
- 2008
- Full Text
- View/download PDF
47. Lock, Stock and Two Different Barrels: Comparing the Genetic Composition of Morphotypes of the Indo-Pacific Sponge Xestospongia testudinaria.
- Author
-
Swierts, Thomas, Peijnenburg, Katja T. C. A., de Leeuw, Christiaan, Cleary, Daniel F. R., Hörnlein, Christine, Setiawan, Edwin, Wörheide, Gert, Erpenbeck, Dirk, and de Voogd, Nicole J.
- Subjects
BARRELS ,LIFE zones ,PLANT species ,PLANT genetics ,GENETIC markers in plants ,PLANT variation ,PLANT morphology - Abstract
The giant barrel sponge Xestospongia testudinaria is an ecologically important species that is widely distributed across the Indo-Pacific. Little is known, however, about the precise biogeographic distribution and the amount of morphological and genetic variation in this species. Here we provide the first detailed, fine-scaled (<200 km
2 ) study of the morphological and genetic composition of X. testudinaria around Lembeh Island, Indonesia. Two mitochondrial (CO1 and ATP6 genes) and one nuclear (ATP synthase β intron) DNA markers were used to assess genetic variation. We identified four distinct morphotypes of X. testudinaria around Lembeh Island. These morphotypes were genetically differentiated with both mitochondrial and nuclear markers. Our results indicate that giant barrel sponges around Lembeh Island, which were all morphologically identified as X. testudinaria, consist of at least two different lineages that appear to be reproductively isolated. The first lineage is represented by individuals with a digitate surface area, CO1 haplotype C5, and is most abundant around the harbor area of Bitung city. The second lineage is represented by individuals with a predominantly smooth surface area, CO1 haplotype C1 and can be found all around Lembeh Island, though to a lesser extent around the harbor of Bitung city. Our findings of two additional unique genetic lineages suggests the presence of an even broader species complex possibly containing more than two reproductively isolated species. The existence of X. testudinaria as a species complex is a surprising result given the size, abundance and conspicuousness of the sponge. [ABSTRACT FROM AUTHOR]- Published
- 2013
- Full Text
- View/download PDF
48. Eggs in the Freezer: Energetic Consequences of Nest Site and Nest Design in Arctic Breeding Shorebirds.
- Author
-
Tulp, Ingrid, Schekkerman, Hans, and de Leeuw, Joep
- Abstract
Birds construct nests for several reasons. For species that breed in the Arctic, the insulative properties of nests are very important. Incubation is costly there and due to an increasing surface to volume ratio, more so in smaller species. Small species are therefore more likely to place their nests in thermally favourable microhabitats and/or to invest more in nest insulation than large species. To test this hypothesis, we examined characteristics of nests of six Arctic breeding shorebird species. All species chose thermally favourable nesting sites in a higher proportion than expected on the basis of habitat availability. Site choice did not differ between species. Depth to frozen ground, measured near the nests, decreased in the course of the season at similar non-species-specific speeds, but this depth increased with species size. Nest cup depth and nest scrape depth (nest cup without the lining) were unrelated to body mass (we applied an exponent of 0.73, to account for metabolic activity of the differently sized species). Cup depth divided by diameter
2 was used as a measure of nest cup shape. Small species had narrow and deep nests, while large species had wide shallow nests. The thickness of nest lining varied between 0.1 cm and 7.6 cm, and decreased significantly with body mass. We reconstruct the combined effect of different nest properties on the egg cooling coefficient using previously published quantitative relationships. The predicted effect of nest cup depth and lining depth on heat loss to the frozen ground did not correlate with body mass, but the sheltering effect of nest cup diameter against wind and the effects of lining material on the cooling coefficient increased with body mass. Our results suggest that small arctic shorebirds invest more in the insulation of their nests than large species. [ABSTRACT FROM AUTHOR]- Published
- 2012
- Full Text
- View/download PDF
49. Sharp increase in inequality in education in times of the COVID-19-pandemic.
- Author
-
Carla Haelermans, Roxanne Korthals, Madelon Jacobs, Suzanne de Leeuw, Stan Vermeulen, Lynn van Vugt, Bas Aarts, Tijana Prokic-Breuer, Rolf van der Velden, Sanne van Wetten, and Inge de Wolf
- Subjects
Medicine ,Science - Abstract
The COVID-19-pandemic forced many countries to close schools abruptly in the spring of 2020. These school closures and the subsequent period of distance learning has led to concerns about increasing inequality in education, as children from lower-educated and poorer families have less access to (additional) resources at home. This study analyzes differences in declines in learning gains in primary education in the Netherlands for reading, spelling and math, using rich data on standardized test scores and register data on student and parental background for almost 300,000 unique students. The results show large inequalities in the learning loss based on parental education and parental income, on top of already existing inequalities. The results call for a national focus on interventions specifically targeting vulnerable students.
- Published
- 2022
- Full Text
- View/download PDF
50. Diagnostic yield of patients with undiagnosed intellectual disability, global developmental delay and multiples congenital anomalies using karyotype, microarray analysis, whole exome sequencing from Central Brazil.
- Author
-
Ana Julia da Cunha Leite, Irene Plaza Pinto, Nico Leijsten, Martina Ruiterkamp-Versteeg, Rolph Pfundt, Nicole de Leeuw, Aparecido Divino da Cruz, and Lysa Bernardes Minasi
- Subjects
Medicine ,Science - Abstract
Intellectual Disability (ID) is a neurodevelopmental disorder that affects approximately 3% of children and adolescents worldwide. It is a heterogeneous and multifactorial clinical condition. Several methodologies have been used to identify the genetic causes of ID and in recent years new generation sequencing techniques, such as exome sequencing, have enabled an increase in the detection of new pathogenic variants and new genes associated with ID. The aim of this study was to evaluate exome sequencing with analysis of the ID gene panel as a tool to increase the diagnostic yield of patients with ID/GDD/MCA in Central Brazil, together with karyotype and CMA tests. A retrospective cohort study was carried out with 369 patients encompassing both sexes. Karyotype analysis was performed for all patients. CMA was performed for patients who did not present structural and or numerical alterations in the karyotype. Cases that were not diagnosed after performing karyotyping and CMA were referred for exome sequencing using a gene panel for ID that included 1,252 genes. The karyotype identified chromosomal alterations in 34.7% (128/369). CMA was performed in 83 patients who had normal karyotype results resulting in a diagnostic yield of 21.7% (18/83). Exome sequencing with analysis of the ID gene panel was performed in 19 trios of families that had negative results with previous methodologies. With the ID gene panel analysis, we identified mutations in 63.1% (12/19) of the cases of which 75% (9/12) were pathogenic variants,8.3% (1/12) likely pathogenic and in 16.7% (2/12) it concerned a Variant of Uncertain Significance. With the three methodologies applied, it was possible to identify the genetic cause of ID in 42.3% (156/369) of the patients. In conclusion, our studies show the different methodologies that can be useful in diagnosing ID/GDD/MCA and that whole exome sequencing followed by gene panel analysis, when combined with clinical and laboratory screening, is an efficient diagnostic strategy.
- Published
- 2022
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.