1. Hepatocyte nuclear factor-1β regulates Wnt signaling through genome-wide competition with β-catenin/lymphoid enhancer binding factor
- Author
-
Siu Chiu Chan, Marco Pontoglio, Peter Igarashi, and Ying Zhang
- Subjects
0301 basic medicine ,Lymphoid Enhancer-Binding Factor 1 ,Ubiquitin-Protein Ligases ,Mice, Transgenic ,digestive system ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Enhancer binding ,Wnt3A Protein ,AXIN2 ,Animals ,Transcription factor ,Wnt Signaling Pathway ,beta Catenin ,Hepatocyte Nuclear Factor 1-beta ,Mice, Knockout ,Extracellular Matrix Proteins ,Kidney Medulla ,Multidisciplinary ,Chemistry ,Chromatin binding ,Wnt signaling pathway ,Epithelial Cells ,Chromatin ,Cell biology ,Hepatocyte nuclear factors ,030104 developmental biology ,Enhancer Elements, Genetic ,Gene Expression Regulation ,PNAS Plus ,030220 oncology & carcinogenesis ,Catenin ,embryonic structures ,Mutation ,Genome-Wide Association Study - Abstract
Hepatocyte nuclear factor-1β (HNF-1β) is a tissue-specific transcription factor that is essential for normal kidney development and renal tubular function. Mutations of HNF-1β produce cystic kidney disease, a phenotype associated with deregulation of canonical (β-catenin–dependent) Wnt signaling. Here, we show that ablation of HNF-1β in mIMCD3 renal epithelial cells produces hyperresponsiveness to Wnt ligands and increases expression of Wnt target genes, including Axin2 , Ccdc80 , and Rnf43 . Levels of β-catenin and expression of Wnt target genes are also increased in HNF-1β mutant mouse kidneys. Genome-wide chromatin immunoprecipitation sequencing (ChIP-seq) in wild-type and mutant cells showed that ablation of HNF-1β increases by 6-fold the number of sites on chromatin that are occupied by β-catenin. Remarkably, 50% of the sites that are occupied by β-catenin in HNF-1β mutant cells colocalize with HNF-1β–occupied sites in wild-type cells, indicating widespread reciprocal binding. We found that the Wnt target genes Ccdc80 and Rnf43 contain a composite DNA element comprising a β-catenin/lymphoid enhancer binding factor (LEF) site overlapping with an HNF-1β half-site. HNF-1β and β-catenin/LEF compete for binding to this element, and thereby HNF-1β inhibits β-catenin–dependent transcription. Collectively, these studies reveal a mechanism whereby a transcription factor constrains canonical Wnt signaling through direct inhibition of β-catenin/LEF chromatin binding.
- Published
- 2019