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Objective: This paper focuses on the research groups registered in the Colciencias platform from January 2005 to April 2012 in order to analyze their ability to conduct research on the social determinants of health (SDH) as well as the opinion of the coordinators of such groups. Methodology: a descriptive observational study focusing on the Colciencias Scienti platform (which holds information on Colombian research groups) and particularly on aspects such as the groups, the researchers and the SDH-related research products. The study was complemented with questionnaires, focus groups and a study on the national system for research. In addition, researchers signed an informed consent form before participating in the study. Results: the 65 groups registered in Colciencias' Health Sciences Program (6%) have published 123 products in the form of scientific papers written in Spanish (48%). Moreover, the predominant studies are those conducted with demographically relevant populations, focusing on health systems, health inequity and prevalent diseases, and based on empirical and analytical methods, as well as the network projects of national scope. The difficulties identified were: scarce political and institutional support for local and national research on the SDH and reduced interaction with policy makers and with other groups speaking other languages. Conclusions: studies based on the approach proposed by the Commission on Social Determinants of Health in 2005 were predominant. Recommendations: it is essential to strengthen the ability to conduct research on the SDH using different approaches-particularly the Latin American approaches-; likewise collaborative network projects should be developed and collective actions should be taken which affect the health research policies for equity. [ABSTRACT FROM AUTHOR]