34 results on '"Flavonoid Biosynthesis"'
Search Results
2. Exogenous application of sucrose promotes the repartitioning of anthocyanin and proanthocyanidin in 'Cabernet Sauvignon' grapevine berries.
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Duan, Bingbing, Zheng, Mingyuan, Li, Jiayi, Zhang, Jiajing, Su-Zhou, Chenxing, Li, Yashan, Merkeryan, Hasmik, and Liu, Xu
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ANTHOCYANINS , *SUCROSE , *CABERNET wines , *GRAPE ripening , *METABOLITES , *GRAPES , *BERRIES , *FRUIT quality , *VITIS vinifera - Abstract
• Exogenous sucrose promoted grape berry ripening. • Sugar metabolism in grape berry was altered by exogenous application of sucrose. • Hexokinase inhibitor had a similar function to sucrose in modifying berry composition. • Sucrose application promotes anthocyanin and proanthocyanidin repartitioning during grape ripening. Sugar and its metabolism play a critical role in fruit quality and determine the accumulation characteristics of secondary metabolites. In this study, the dynamic changes in anthocyanin and proanthocyanidin (PA) accumulation during exogenous sugar application were investigated throughout the grape ripening stage, and the underlying biosynthesis mechanism was monitored. Results showed that exogenous sucrose and N -acetyl- d -glucosamine (hexokinase inhibitor, HI) promoted grape berry ripening. Exogenous application of sucrose and HI significantly increased the levels of soluble sugars and anthocyanins, while significantly decreased the levels of acids and PAs in grape berries. Exogenous sucrose and HI activated the transcription of the VvSPS, VvAI and VvNI genes but inhibited the transcription of VvHXK gene to alter sugar metabolism. Notably, the accumulation of anthocyanin compounds, particularly peonidin derivatives, significantly increased in the sucrose- and HI-treated berries by upregulating the transcription of anthocyanin biosynthesis genes, including VvCHS2, VvF3′H, VvDFR, VvLDOX , and VvUFGT , whereas the accumulation of PA units, such as (‒)-epicatechin, (+)-gallocatechin, and (‒)-epigallocatechin, was repressed by downregulating the transcription of the VvLAR2 and VvANR genes, which boosted anthocyanin and PA reprogramming. These results provide preliminary information on how to modulate the biosynthesis and accumulation of anthocyanins and PAs in grape berries by the exogenous application of sucrose and thus, to modify berry composition. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Comparative metabolomic analyses reveal metabolites associated with seed deterioration in Chinese cabbage.
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Lv, Hai-Xin, Xu, Han, Yang, Kun, and Yan, Min
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CHINESE cabbage , *SEED storage , *METABOLITES , *SEEDS , *REACTIVE oxygen species - Abstract
• We firstly employed a biochemical and metabolomics approach to investigate the impact of seed deterioration on naturally aged Chinese cabbage seeds and to identify the types and variations of differentially accumulated metabolites. • The prominent metabolite in response to seed deterioration was longicamphenylone, and the most significant metabolic pathway associated with seed deterioration was flavonoid biosynthesis. Our research findings present the initial evidence linking endogenous antibiotics with seed aging. • A comprehensive and precise understanding of the physiology and biochemistry of the ageing process is essential for designing specialized seed storage protocols for different species. Seed deterioration during storage results in a decline in vigor, which has a negative impact on agricultural production. However, the mechanisms responsible for ageing are still poorly understood. The aim of present study was to investigate the physiological, biochemical, and metabonomic changes in naturally aged Chinese cabbage (Brassica pekinensis L.) seeds, and identify potential markers of seed deterioration. In this study, Chinese cabbage seeds with different moisture contents (1 % and 4 %) were stored under ambient conditions for 13 years. We employed a biochemical and metabolomics approach to investigate the impact of seed deterioration on naturally aged Chinese cabbage seeds and to identify the types and variations of differentially accumulated metabolites. Our findings demonstrate that the initial storage moisture content has a significant impact on the loss of seed vigor. The seed lot with an initial moisture content of 1 % exhibited higher viability and vigor after natural storage. High-vigor seeds showed higher catalase (CAT) activity, lower H 2 O 2 and malondialdehyde (MDA) content, and reduced electrolyte leakage. No significant difference was observed between the two seed lots in terms of superoxide dismutase (SOD) activity, peroxidase (POD) activity, and soluble protein content. Metabolite analysis revealed 1,117 differential metabolites between the two seed lots. The differential metabolites were associated with various aspects of seed ageing, including changes in glycerophospholipids, phytohormones, antibiotics, reduction of antioxidant substances and raffinose, degradation of triglycerides, accumulation of toxic compounds, and DNA damage. Longicamphenylone was the prominent metabolite in response to seed deterioration. Pathway enrichment analysis revealed that flavonoid biosynthesis, which is involved in scavenging reactive oxygen species(ROS), was the most significant metabolic pathway associated with seed deterioration. Our findings also present the initial evidence linking endogenous antibiotics with seed aging. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Integrated transcriptome and small RNA sequencing revealing miRNA-mediated regulatory network of bicolour pattern formation in Pericallis hybrida ray florets.
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Li, Hao, Qi, Fangting, Sun, Danni, Cui, Yumeng, and Huang, He
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NON-coding RNA , *RNA sequencing , *GENE expression , *TRANSCRIPTOMES , *ORNAMENTAL plants , *POLYMER networks - Abstract
• PhLAR, PhMYB8 and PhbHLH137 are up-regulated in colourless region. • miRNAs are identified in Pericallis hybrida for the first time. • miR172-AP2 and miR156-SPL modules are crucial in regulating bicolour pattern. • PhAP2 functions as an inhibitor of bicolour pattern appearance. Flower spots of plants are of evolutionary importance and ornamental value, but research on regulatory mechanisms is still limited. Cineraria (Pericallis hybrida) is an important ornamental plant with various bicolour cultivars. In this study, we performed transcriptome and small RNA sequencing to investigate the regulatory network of bicolour pattern formation in P. hybrida ray florets. Through transcriptome sequencing, we mainly focused on differentially expressed genes (DEGs) involved in flavonoid biosynthesis. Gene expression analysis showed that PhLAR (Unigene0092951), PhMYB8 (Unigene0068595) and PhbHLH137 (Unigene0091507) were up-regulated in the colourless region. Additionally, we identified 234 known miRNAs and 280 novel miRNAs by sRNA sequencing, and 49 differentially expressed miRNAs (DEmiRs) were screened. Integrated analysis of RNA-seq and sRNA-seq data revealed that miR172-AP2 and miR156-SPL modules were crucial in regulating bicolour pattern formation. When PhAP2 was transiently silenced in cineraria capitulum by virus-induced gene silencing (VIGS), the colourless region of ray florets increased and the coloured region changed from carmine to pink. Meanwhile, PhCHS2, PhDFR3 and PhANS were down-regulated, while PhLAR was up-regulated significantly. It was hypothesized that PhAP2 functions as an inhibitor of bicolour pattern appearance and could influence flavonoid biosynthesis. Overall, our study revealed a possible regulatory network of miRNA-mediated bicolour pattern appearance in P. hybrida , which could enrich the post-transcriptional regulatory mechanisms of flower spots formation in ornamental plants. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Hydrogen peroxide promotes potassium uptake by activating flavonoid biosynthesis pathway and ethylene signaling in grapevines.
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Wei, Tong-Lu, Guo, Da-Long, Pei, Mao-Song, Wang, Ze-Hang, Liu, Hai-Nan, and Yu, Yi-He
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FLAVONOIDS , *HYDROGEN peroxide , *BIOSYNTHESIS , *POTASSIUM , *CROPS , *VITICULTURE , *RESVERATROL , *JASMONATE - Abstract
• Hydrogen peroxide (H 2 O 2) treatment improves K+ uptake in grapes. • H 2 O 2 treatment activates flavonoid biosynthesis pathway. • H 2 O 2 changes ethylene signaling to promote K+ uptake by regulating K+ transporters. Potassium ion (K+) is an essential nutrient for plants. Grapes are an important industrial crop with an extremely high demand for potassium. However, potassium deficiency occurs frequently in viticulture and greatly restricts the grape industry. Developing a technique to improve potassium uptake efficiency is of vital importance for grapes. In this study, we found that hydrogen peroxide (H 2 O 2) treatment could improve K+ uptake in grapes. To determine the mechanisms underlying H 2 O 2 -induced K+ uptake, transcriptome sequencing (RNA-seq) was conducted and the differentially expressed genes were further analyzed. Gene Ontology (GO) enrichment indicated that ion transport-related pathways and genes changed after H 2 O 2 treatment. Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis and weighted gene co-expression network analysis (WGCNA) showed that the flavonoid biosynthesis pathway was closely related to H 2 O 2 -induced K+ uptake, and H 2 O 2 treatment could activate the flavonoid biosynthesis pathway. Further analysis demonstrated that H 2 O 2 treatment could activate ethylene synthesis and the ethylene signaling pathway, which promoted K+ uptake by regulating K+ transporter genes. Overall, this study demonstrates a new technique, H 2 O 2 treatment, for enhancing potassium uptake efficiency in grapes and reveals the molecular mechanisms underlying H 2 O 2 -induced K+ uptake. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Blue light exposure intensifies leaf red pigmentation and enhances oxidative stress tolerance in the ornamental bromeliad Neoregelia 'Fireball'.
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Shi, Jiewei, Zhan, Shuxia, Jin, Liang, Zhou, Qin, Shen, Yuxiao, Wan, Xiao, Zou, Longhai, Dong, Qing, Bao, Manzhu, Tian, Danqing, Ning, Guogui, and Ge, Yaying
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BLUE light , *BROMELIACEAE , *BIOLOGICAL assay , *SECONDARY metabolism , *ORNAMENTAL plants , *FLAVONOIDS - Abstract
• Blue light intensifies leaf red pigmentation in plants of the cultivar Neoregelia 'Fireball' by improving anthocyanin biosynthesis and decreasing the accumulation of chlorophylls. • Lignin metabolism and proanthocyanidin biosynthesis in Neoregelia are also promoted by exposure to blue light. • Neoregelia plants exposed to blue light display enhanced tolerance to oxidative stress and higher expression levels of antioxidant-related genes. • NfWRKY70 is a potential key gene involved in the blue light-induced leaf red pigmentation and oxidative tolerance. Neoregelia is a genus of attractive, eye-catching foliage plants in the family Bromeliaceae. Blue light globally regulates multiple biological processes and secondary metabolism in plants. Recently, addition of blue light to the spectrum was reported to intensify pigmentation in some ornamental pot plants. Nevertheless, how blue light influences leaf red pigmentation and oxidative stress tolerance in Neoregelia is unclear. In this study, we performed RNA-seq analysis and a series of assays related to biological, physiological, and phenotypic characteristics. We found that exposure to blue light not only inhibits chlorophyll biosynthesis and accelerates the degradation of chlorophylls, but also up-regulates several flavonoid biosynthesis genes and significantly increases the accumulation of anthocyanins in Neoregelia 'Fireball' plants. Ultimately, this response leads to the presence of pure dark red leaves. We also found that blue light enhances oxidative stress tolerance in Neoregelia by promoting the expression of antioxidant-related genes and the accumulation of more proanthocyanidins (PAs). Our results also showed that blue light plays a positive role in lignin biosynthesis by activating the transcription of lignin biosynthesis-related genes in Neoregelia plants exposed to blue light. Furthermore, co-expression network analyses of RNA-seq data indicated that NfWRKY70 may be a key gene involved in the intensified leaf red pigmentation and enhanced oxidative tolerance caused by blue light exposure. Our findings provide novel insights into the regulatory mechanisms underlying blue light-induced leaf red pigmentation and oxidative tolerance, and offer new clues for the coordination between flavonoid and lignin biosynthesis in the plant phenylpropanoid biosynthetic pathway. [ABSTRACT FROM AUTHOR]
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- 2023
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7. RNA-sequencing analysis of candidate genes involved in berry development in 'Summer Black' grapes and its early bud mutants varieties.
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Wang, Hao, Liu, Chonghuai, Sun, Lei, Yang, Shengdi, Fan, Xiucai, Zhang, Ying, Guo, Dalong, and Jiang, Jianfu
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VITIS vinifera , *GRAPES , *RNA sequencing , *FRUIT ripening , *GENES , *GALLIC acid - Abstract
• Fructose and glucose accumulated earlier in the EL-34 stage. • Differentially expressed genes were enriched in flavonoid biosynthesis. • Candidate genes were identified by DEG and transcription factor prediction analyses. Berry development time and early maturity are important breeding traits in grapes. The mechanisms for early grape bud mutants remain unclear. Grape development is divided into three major phases known as the modified E–L system. This study measured fructose, glucose, tartaric acid, gallic acid, malic acid, and dihydroquercetin of 'Summer Black' and its bud mutants cultivars 'Chunxiangwuhe,' 'Zaoxiaxiang,' and 'Sanbenti' at different fruit development stages to determine their role in fruit maturity. RNA-sequencing analysis was used to identify the genes involved in fruit ripening. The results showed that fructose and glucose were accumulatedearlier during the EL-34 stage of the early bud mutants cultivars, whereas malic and tartaric acids levels showed a significant downward trend. Gene set enrichment analysis and weighted gene co-correlation network analysis showed that the differentially expressed genes were primarily enriched in flavonoid biosynthesis and galactose metabolism. Some candidate genes, including GAST1, APX2, ATHB-12, and AOS1, were identified via DEG and transcription factor prediction analyses. These genes play an essential role in the development of grape berries. The role of these genes was verified via qRT-PCR. The results of this study provide a theoretical basis for the genetic improvement of grapes. [ABSTRACT FROM AUTHOR]
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- 2023
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8. Integrative analysis of the metabolome and transcriptome provides novel insights into the mechanisms of flavonoid biosynthesis in Camellia lanceoleosa.
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Song, Qiling, Gong, Wenfang, Yu, Xinran, Ji, Ke, Chang, Yihong, Wang, Linkai, and Yuan, Deyi
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FLAVONOIDS , *CAMELLIAS , *TRANSCRIPTOMES , *BIOSYNTHESIS , *GERMPLASM , *BIOACTIVE compounds , *GENE regulatory networks , *TRANSCRIPTION factors - Abstract
• A total of 1437 metabolites were identified in different tissues of C. lanceoleosa. • Flavonoids were the most abundant metabolites in C. lanceoleosa. • Differentially expressed genes were enriched in the flavonoid biosynthesis pathways. • Fifteen hub genes involved in flavonoid biosynthesis were identified using WGCNA. Flavonoids, the effective material basis for the anti-thrombotic, anti-myocardial ischemia, and anti-dementia drug system framework, are one class of the main bioactive compounds in tea-oil Camellia. However, the molecular mechanism of the transcription regulation of flavonoid biosynthesis in tea-oil Camellia has not been fully investigated. Camellia lanceoleosa (C. lanceoleosa) is a diploid species of section Oleifera with genomic information, which has high value in scientific research and application. To comprehend the molecular mechanism of flavonoid biosynthesis in C. lanceoleosa , five different tissues (roots, stems, leaves, flower buds, and seeds) were used to perform an integrated analysis of the metabolome and transcriptome. Overall, 1,437 metabolites were identified and quantified, among which 488 common metabolites and 92 tissue-specific metabolites were detected in different tissues of C. lanceoleosa. Notably, the most abundant metabolite class was the flavonoids in the detected tissues of C. lanceoleosa. Furthermore, the differential metabolites and genes were also mainly enriched in flavonoid biosynthesis. A total of 145 differentially accumulated flavonoids and 65 differentially expressed structural genes were found within the biosynthesis of flavonoid in C. lanceoleosa. The expression patterns of most genes were consistent with the flavonoid accumulation patterns in the corresponding pathways. Using weighted gene coexpression network analysis, five gene modules and several candidate hub genes involved in flavonoid biosynthesis were investigated in different tissues of C. lanceoleosa , these genes included differentially expressed structural genes (PAL, CHS, DFR , and ANR) and transcription factors (bHLH s, MYB s, WRKY s, NAC s, and SPL6). These results provide useful genetic resources for studying the molecular insights into the regulatory network of flavonoid biosynthesis in C. lanceoleos. [ABSTRACT FROM AUTHOR]
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- 2022
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9. Tobacco straw biochar improved the growth of Chinese cherry (Prunus pseudocerasus) via altering plant physiology and shifting the rhizosphere bacterial community.
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Yang, Kun, Jiang, Yuwen, Wang, Jianning, Cai, Xiaowei, Wen, Zhuang, Qiu, Zhilang, and Qiao, Guang
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PLANT growth , *PLANT physiology , *BACTERIAL communities , *BIOCHAR , *PRUNUS , *RHIZOSPHERE , *TOBACCO - Abstract
• Tobacco straw-derived biochar promoted biomass production of Prunus pseudocerasus Lindl. by facilitating photosynthesis, nutrient uptake and phytohormone accumulation. • Tobacco straw-derived biochar enhanced flavonoid biosynthesis of Prunus pseudocerasus Lindl. which was associated with the shift of rhizosphere bacterial community. • Tobacco straw-derived biochar impacted soil nitrogen cycling by inhibition of related bacteria and enhanced N uptake of Prunus pseudocerasus Lindl. Tobacco straws are byproducts during cigarette manufacturing, which have drawn attention for how to dispose them not at the cost of environment. Processing them into biochar might turn waste into wealth given their potentials for soil amelioration and crop growth promotion. However, the effects of biochar application are variable which severely limits their application. The aim of this study was to reveal the effect of tobacco straw biochar (TBC) on growth of Chinese cherry and the underlying mechanism. In present work, the response of Chinese cherry 'Manaohong' (Prunus pseudocerasus Lindl.), an economically valuable cultivar in Guizhou Province, to TBC was investigated using a six-month pot experiment. The TBC facilitated photosynthesis and uptake of nitrogen, phosphorus, potassium and manganese, and further promoted the plant growth. In addition, accumulation of endogenous phytohormones was affected. Higher level of indoleacetic acid, gibberellin A3, zeatin and lower level of abscisic acid were observed in TBC. In combination with high-throughput sequencing, the activation of indoleacetic acid and inactivation of abscisic acid signal transductions were detected at gene level, which further backed up the assumption that phytohormone signaling was affected by TBC addition. Moreover, according to our proposed pathway, majority genes for flavonoid biosynthesis were upregulated indicating that flavonoids were highly synthesized in roots in response to TBC, which reshaped the rhizosphere bacterial community by allowing growth-promoting bacteria to burgeon and suggested labile organic carbon fraction was the powerful factor for rhizosphere bacterial community shift. The results of our study partially explain the underlying mechanism of biochar-mediated growth promotion and provide crucial information for application of biochar on plants with high economic value. [ABSTRACT FROM AUTHOR]
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- 2022
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10. Identification of DFR as a promoter of anthocyanin accumulation in poinsettia ( Euphorbia pulcherrima , willd. ex Klotzsch) bracts under short-day conditions
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Ruonan Yang, Hao Chen, Meihui Ran, and Zhanying Gu
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0106 biological sciences ,0301 basic medicine ,Euphorbia ,Bract ,biology ,fungi ,food and beverages ,Horticulture ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Flavonoid biosynthesis ,chemistry ,Arabidopsis ,Anthocyanin ,Botany ,Ornamental plant ,Arabidopsis thaliana ,Poinsettia ,010606 plant biology & botany - Abstract
Poinsettia (Euphorbia pulcherrima, Willd. ex Klotzsch) originated in Mexico is an important ornamental tree in all over the world because its bract color can change from green to red under short-day conditions. In view of this, poinsettia not only has high ornamental value but also is an important model plant in studies on anthocyanin metabolism regulated by photoperiod. In this research, we compared the content of metabolic products in anthocyanin biosynthesis pathway and transcriptome sequencing data between green and red-turning bracts of poinsettia to clarify the mechanism of color change. The results of metabolic product analysis suggested that far downstream genes such as dihydroflavonol 4-reductase (DFR) gene in anthocyanin biosynthesis pathway could be inhibited in green bracts. A total of 91,917 uni-transcripts were identified through transcriptome sequencing. Seventy-two uni-transcripts were assigned to flavonoid biosynthesis pathways. Through a correlation analysis of gene expression profiles and color compound contents, DFR was taken into account as a candidate gene promoting anthocyanin accumulation in poinsettia bracts under short-day conditions. Transgenic research showed that overexpression of poinsettia DFR significantly increased the anthocyanin content in Arabidopsis (Arabidopsis thaliana). Based on these results, this research identified DFR as a promoter of anthocyanin accumulation in poinsettia bracts under short-day conditions. Moreover, the results of this research will shed light on elucidation of anthocyanin biosynthesis mechanism of plants and provide candidate genes for genetic improvement on poinsettia.
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- 2018
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11. Comparative transcriptomic analysis of white and red Chinese bayberry ( Myrica rubra ) fruits reveals flavonoid biosynthesis regulation
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Liyu Shi, Yonghua Zheng, Xin Chen, Wei Chen, and Zhenfeng Yang
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0106 biological sciences ,0301 basic medicine ,chemistry.chemical_classification ,biology ,Flavonoid ,food and beverages ,Leucoanthocyanidin reductase ,Horticulture ,biology.organism_classification ,01 natural sciences ,Anthocyanidin reductase ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Flavonoid biosynthesis ,Biochemistry ,chemistry ,Proanthocyanidin ,Biosynthesis ,Anthocyanin ,Myrica rubra ,010606 plant biology & botany - Abstract
To fully elucidate molecular mechanisms of flavonoid biosynthesis in Chinese bayberry, transcriptomes of two genotypes with different colours, white cultivar (Shuijing, SJ) and red cultivar (Biqi, BQ), were compared. During fruit development, ‘BQ’ exhibited substantial increase of total anthocyanins content together with dramatic decrease of total soluble proanthocyanidins (PAs) content, while ‘SJ’ displayed decrease of total soluble PAs levels but failed to accumulate anthocyanin. Based on the sequencing results, 124,265 unigenes were generated with an average length of 708 bp. All genes involved in anthocyanin biosynthesis and glycosylation were identified and their expression patterns were in accordance with total anthocyanin accumulation in developing fruits of ‘BQ’ and ‘SJ’. Expression levels of leucoanthocyanidin reductase (LAR) and anthocyanidin reductase (ANR) were down-regulated in ‘SJ’ in agreement with the decrease in PAs, while an opposite trend was observed in ‘BQ’. The higher expression levels of LAR and ANR in ‘BQ’ may be an important reason for the higher levels of total soluble PAs as compared to ‘SJ’. Phylogenetic analysis showed that seven MYBs could be identified as putative homologues of PA-specific regulator and exhibited considerable genotypic and temporal specificity of expression. In addition, three WD40 genes in Chinese bayberry clustered with the WD40s related to flavonoid biosynthesis in other species. Finally, RNA-Seq data was validated by using qRT-PCR analysis with a high correlation, suggesting that the RNA-Seq data here are credible. These results provide new insights into the regulation of the complex branching pathway leading to various flavonoid compounds biosynthesis in bayberries.
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- 2018
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12. Synergistic effect of abscisic acid and ethylene on color development in tomato ( Solanum lycopersicum L.) fruit
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Jiawei Bai, Wangshu Mou, Tiejin Ying, Zisheng Luo, Li Li, Qiong Wu, Xiaoya Tao, Zhaojun Ban, and Linchun Mao
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0106 biological sciences ,0301 basic medicine ,chemistry.chemical_classification ,Ethylene ,biology ,Chemistry ,fungi ,food and beverages ,Ripening ,Promoter ,Horticulture ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Flavonoid biosynthesis ,Biochemistry ,Solanum ,Carotenoid ,Gene ,Abscisic acid ,010606 plant biology & botany - Abstract
In order to investigate the synergistic effect of abscisic acid and ethylene on tomato color development during ripening, mature green tomato fruit were harvested and treated with abscisic acid (ABA), 1-methylcyclopropene (1-MCP), alone or in combination, and dihydroguaiaretic acid (NDGA), and then were stored at 20 °C and 90% RH for fourteen days. Endogenous ethylene production, color development and the expression profiles of major related genes in treated fruits were examined. Furthermore, 2000 bp sequences upstream of major related genes were analyzed. Results indicated that ABA significantly up-regulated the expression levels of major genes related to carotenoids and flavonoids biosynthesis (ranging from 2.08 to 35 folds) and initiated the accumulation of carotenoids, phenolics and flavonoids by 2 or 4 days earlier than that in control. However, results demonstrated that the exogenous ABA could not significantly affect tomato color development without ethylene. The outcome of gene promoter analysis revealed that, besides single existence of ABRE or ERE motifs, 10 of 23 genes involved in carotenoids biosynthetic pathway, and 10 of 40 genes involved in flavonoid biosynthesis pathway possess both ABRE and ERE motifs in their 2000 bp upstream sequences, suggesting that ABA and ethylene may affect fruit color development via the collaborative regulation of these genes.
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- 2018
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13. Integrated transcriptomics and metabolomics uncover the molecular basis of flavonoid accumulation in the rhizomes of two Cymbidium tortisepalum var. longibracteatum cultivars
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Yu Jiang, Hai-Yan Song, Jun-Rong He, and Yaqin Liu
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chemistry.chemical_classification ,Genetics ,Phenylpropanoid ,fungi ,Flavonoid ,food and beverages ,Horticulture ,Biology ,Rhizome ,Transcriptome ,chemistry.chemical_compound ,Flavonoid biosynthesis ,Metabolomics ,Biosynthesis ,chemistry ,Transcription factor - Abstract
The rhizome is crucial for asexual propagation in plants. Green rhizome (termed as GR) and yellow rhizome (termed as YR) are the rhizomes of two Cymbidium tortisepalum var. longibracteatum cultivars with colour differences. In this study, we carried out integrated transcriptomic and metabolomic profiling to explore the pathways and key genes between them. The transcriptome assembled 134,527 unigenes and 508 unigenes (244 upregulated and 264 downregulated) with differential expression patterns. Metabolomic analysis identified 420 metabolites, and 115 were differentially accumulated metabolites, including 37 upregulated and 78 downregulated metabolites. Integration of transcriptome profiling and metabolite analysis revealed "phenylpropanoid biosynthesis" and "flavonoid biosynthesis" were significantly enriched. One R2R3 type v-myb avian myeloblastosis viral oncogene homologue (R2R3-MYB) transcription factor (c1121_g1), two basic helix-loop-helix (bHLH) transcription factors (c59082_g2 and c103838_g1), and five flavonoid biosynthesis related unigenes (c34902_g1, c82361_g1, c22242_g1, c39937_g1, c47509_g1) were highly expressed in YR, which is consistent with the flavonoid content. These findings shed light on the regulation of flavonoid biosynthesis and will contribute to the breeding of new cultivars in orchids.
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- 2022
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14. Transcriptomic analyses provide new insights into jujube fruit quality affected by water deficit stress
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Zhang Qiong, Zhongtang Wang, Haixia Tang, Xiaochang Dong, and Chunmei Zhang
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Sucrose ,Phenylpropanoid ,food and beverages ,Ripening ,Horticulture ,Biology ,Sweetness ,Carbohydrate metabolism ,Pectinesterase ,chemistry.chemical_compound ,Flavonoid biosynthesis ,chemistry ,Sugar - Abstract
Water availability is a crucial factor affecting fruit quality and productivity. A period of mild drought stress can increase fruit sweetness and improve fruit quality. However, the mechanism underlying the transcriptional regulation in Chinese jujube under water deficit conditions remains relatively uncharacterized. In this study, we analyzed the protein and sugar contents, the average weight, and transcript expression (RNA sequencing) of jujube fruit at different ripening stages (i.e., white mature and half-red fruit) under mild and severe water deficit conditions. The sucrose and protein contents increased significantly under water deficit conditions. The increase in water deficit stress from mild to severe did not significantly alter the sugar accumulation, but it decreased the average fruit weight. The sugar- and amino acid-related pathways, flavonoid biosynthesis, xyloglucan metabolism, and phenylpropanoid biosynthesis were affected by water deficit stress. Gene co-expression analyses identified many ABA- and ethylene-related genes with expression levels modulated by water deficit conditions, especially in the half-red stage. Additionally, we identified the key genes affecting fruit sugars, pigments, cell wall polysaccharides, and phenylpropanoids, which influence fruit quality. Notably, genes related to sugar transporters rather than sugar metabolism contributed to the sucrose accumulation. Flavonoid synthesis-related gene expression contributed to the earlier coloration of the stressed fruit than of the control fruit. Severe water deficit stress up-regulated the expression of pectinesterase and endotransglucosylase/hydrolase genes, which accelerated fruit ripening and softening. Regarding the phenylpropanoid biosynthesis pathway, the exposure to mild water deficit stress promoted the synthesis of secondary metabolites useful to humans (e.g., coniferin and syringin), whereas the severe water deficit treatment increased lignin accumulation. Considered together, these findings revealed the transcriptional regulatory mechanism that improved jujube fruit quality under mild drought conditions. Furthermore, the results of this study may be useful for optimizing the irrigation during jujube cultivation.
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- 2022
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15. Cinnamic acid treatment reduces the surface browning of fresh-cut taro
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Xie Jing, Bin Wang, Xiao Yanhui, He Jinming, Yuanyuan Jiang, Jieli Zhang, and Yuan Yuan
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chemistry.chemical_classification ,Antioxidant ,biology ,medicine.medical_treatment ,Flavonoid ,Horticulture ,Cinnamic acid ,chemistry.chemical_compound ,Flavonoid biosynthesis ,chemistry ,Catalase ,Browning ,medicine ,biology.protein ,Food science ,Hydrogen peroxide ,Peroxidase - Abstract
The efficacy of cinnamic acid (CA) as an antibrowning agent was evaluated in fresh-cut taro. Different concentrations (0.1 g L−1, 0.2 g L−1 and 0.4 g L−1) of CA treatments reduced the browning index and a* and b* values but maintained L* values, suggesting that CA treatments prevented the browning development of fresh-cut taro during storage. Among the concentrations used, 0.1 g L−1 CA was sufficient to reduce browning. CA treatment (0.1 g L−1) reduced the total flavonoid content and the activity and gene expression of four main enzymes (PAL, C4H, 4CL and CHS) in the flavonoid biosynthesis pathway, suggesting that CA treatment reduced taro browning by suppressing the de novo biosynthesis of flavonoid compounds. Furthermore, CA treatment significantly reduced the lignin content, activity and gene expression of cinnamyl-alcohol dehydrogenase and slightly reduced the firmness of taro slices. Moreover, CA treatment showed strong inhibition of PPO activity in vivo and in vitro, suggesting that CA reduced phenolic oxidation by inhibiting PPO activity. CA-treated taro showed significantly reduced hydrogen peroxide content but enhanced activity and gene expression of catalase and peroxidase. In addition, CA had strong radical scavenging activity, suggesting that the application of CA to fresh-cut taro enhanced antioxidant activity. Overall, CA treatment reduced the surface browning of fresh-cut taro by suppressing the activity of browning-related enzymes and by improving antioxidant activity. The results presented in this study indicate that CA is an effective natural antibrowning agent for fresh-cut taro.
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- 2022
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16. Metabolome and transcriptome analyses unravel the inhibition of embryo germination by abscisic acid in pear
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Qi Kai-Jie, Gu Chao, Zhang Shao-ling, Li Lu-Fei, Wu Xiao, Xie ZhiHua, and Gao Xin
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Transcriptome ,Metabolic pathway ,chemistry.chemical_compound ,Flavonoid biosynthesis ,chemistry ,Biosynthesis ,Biochemistry ,Metabolome ,food and beverages ,Metabolism ,Horticulture ,Secondary metabolism ,Abscisic acid - Abstract
It is well-known that abscisic acid (ABA) inhibits seed germination, but the mechanism is still unclear. In this study, after removing the seed coats, the seeds treated with 1 ppm ABA to inhibit embryo germination. A total of 715 compounds that were involved in 271 metabolic pathways were identified from a broadly targeted metabolome. Of these compounds, the number of flavonoids is most and accounting for 21%. Moreover, compared to the control embryos, over 80% of the differentially accumulated compounds (DACs) were down-regulated in the ABA-treated embryos, while only 46 compounds were up-regulated. These differentially accumulated compounds were involved in 26 metabolic pathways. Transcriptome analysis showed that 6348 genes were differentially expressed between ABA-treated and control embryos. These differentially expressed genes (DEGs) were enriched into 28 metabolic pathways including photosynthesis. Interestingly, both DEG and DAC analyses had identified the 10 common metabolic pathways, including oxidative phosphorylation, phenylpropanoid biosynthesis, flavonoid biosynthesis, pyrimidine metabolism, ascorbate and aldarate metabolism, galactose metabolism, glycolysis/gluconeogenesis, carbon metabolism, amino sugar and nucleotide sugar metabolism, and valine, leucine and isoleucine degradation. Taken together, ABA represses the expression of the genes involved in photosynthesis and those 10 metabolic pathways to suppress the secondary metabolism of the embryos, resulting in the inhibition of embryo germination.
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- 2022
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17. Metabolomics combined with physiological and transcriptomic analyses reveal regulatory features associated with blueberry growth in different soilless substrates.
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Yang, Haiyan, Wu, Yaqiong, Duan, Yongkang, Zhang, Chunhong, Huang, Zhengjin, Wu, Wenlong, Lyu, Lianfei, and Li, Weilin
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- *
BLUEBERRIES , *CARBOXYLIC acid derivatives , *TRANSCRIPTOMES , *RICE hulls , *VACCINIUM corymbosum , *FLAVONOIDS , *METABOLOMICS , *BARK - Abstract
• The physiology, transcriptomics and metabonomics of the blueberry seedlings were studied under different substrate cultivation. • There was significant difference in the growth statement of seedlings among PB, PR and BR treatments. • Multiple prenol lipids and flavonoids were significantly changed and may be closely related to blueberry growth. • VcPAL, VcHCT, VcF14G24.3 , and VcCHS were found to have high connectivity and mutual regulation. • This study provides a better understanding of the responses of blueberry seedlings to different substrate treatments and reference for blueberry soilless cultivation. The objective of this study was to evaluate the effects of soilless substrate mixtures on blueberry seedling growth under greenhouse conditions and to determine the optimal growth media for soilless blueberry (Vaccinium australe) cultivation. Trials were carried out with two-year-old blueberry seedlings from April to August 2021. Three mixed substrates (PB: peat and bark (1:1, v/v), PR: peat and rice husk (1:1, v/v), and BR: bark and rice husk (1:1, v/v)) were investigated. The results showed that the plant height, stem diameter and chlorophyll content were much higher in PB and PR than in BR. The PB and PR substrates triggered antioxidant system activity and exerted marked positive effects on blueberry seedling growth. The total flavonoid content was greatly increased in the PB group compared with the other two groups. Most element contents were greatly increased with BR compared with PB and PR. Furthermore, metabolomic and transcriptomic analyses revealed the critical responses of metabolic pathways to different substrate treatments in blueberry leaves collected in June. Overall, the metabolomic data revealed 757 metabolites with decreased levels and 1383 metabolites with increased levels. The levels of multiple prenol lipids, flavonoids, organooxygen compounds, carboxylic acids and derivatives were changed. "Flavonoid biosynthesis" was the most significantly enriched pathway and may be closely related to blueberry growth. Integrated transcriptomic and metabolomic data suggested that the expression of 4 DEGs, VcPAL, VcHCT, VcF14G24.3 , and VcCHS, was strongly correlated with flavonoid biosynthesis. This work provides insights for elucidating the mechanisms that mediate the growth adaptability of blueberry cv. 'Zhaixuan 7' in different substrates. [ABSTRACT FROM AUTHOR]
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- 2022
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18. Identification of key genes in the biosynthesis pathways related to terpenoids, alkaloids and flavonoids in fruits of Zanthoxylum armatum
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Zhao Feiyan, Zhong Yu, Gong Wei, Hui Wenkai, Zhang Shaobo, Jia Luping, Ma Lexun, and Wang Jing-yan
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Molecular breeding ,fungi ,Horticulture ,Biology ,biology.organism_classification ,Terpenoid ,chemistry.chemical_compound ,Flavonoid biosynthesis ,Zanthoxylum ,Biosynthesis ,chemistry ,Botany ,Cultivar ,KEGG ,Gene - Abstract
Zanthoxylum armatum is an important economic tree for the food and pharmaceutical industries, due to its the special numbing taste. Despite having highly volatile aromatic compounds, the cultivars of Z. armatum are underexplored for genetics and molecular breeding programs. In this study, we integrated the fruit development and maturation process across eight samples (Fr1 to Fr8) in Z. armatum. From the Fr1 to Fr4 stage, the fruit grew rapidly to a certain size, however, in subsequent stages (Fr5 to Fr8) the fruit size did not increase but inclusions began to accumulate within the oil vacuole. Additionally, the significantly differentially expressed genes in the fruit compared with other organs (root, stem, leaves, and bud) were screened and enriched in 17 KEGG pathways, including 28 genes for terpenoids, 5 genes for alkaloids and 7 genes for flavonoid biosynthesis processes. Furthermore, some bioinformatic analyses were performed to obtain more information about these genes. Moreover, the RT-qPCR results of all vital genes selected in present study showed that the Fr4 stage was the core phase for the biosynthesis of numbing taste compounds in Z. armatum. To the best of our knowledge, this study is the first comprehensive analysis to identify the key genes associated with terpenoid, alkaloid and flavonoid biosynthesis processes in the fruit of Z. armatum. Our results will provide an insight into explore the genetic mechanism of numbing taste in Zanthoxylum, which will be helpful for identifying and breeding some high-quality varieties.
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- 2021
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19. Effect of water deficit on Merlot grape tannins and anthocyanins across four seasons
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Bucchetti, Barbara, Matthews, Mark A., Falginella, Luigi, Peterlunger, Enrico, and Castellarin, Simone D.
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GRAPES , *PLANT growth , *FRUIT ripening , *TANNINS , *ANTHOCYANINS , *PLANT-water relationships - Abstract
Abstract: Tannins and anthocyanins impart important sensory attributes and potential health benefits in wine. The effect of water deficits (WDs) on fruit growth, anthocyanins, and skin tannins was investigated in field grown Vitis vinifera L. ‘Merlot’ berries across four seasons (2004, 2005, 2007, and 2008) by imposing deficits from the onset of ripening until maturity. WD reduced berry weight and increased the concentration of anthocyanins all four seasons, and increased the concentration of tannins three of four seasons. Under WD, anthocyanin concentration at harvest (mg/g of berry fresh weight) was 53.0–61.6% greater than in Controls (C), and anthocyanin content (mg/berry) was 28.7–35.3% greater than in C. By contrast, WD increased tannin concentration (mg/g of berry fresh weight) at harvest by 12.6–36.9% compared to C in 2004, 2005, and 2008, and did not influence the concentration in 2007. Tannin content (mg/berry) at harvest was unaffected except in 2004 when it was 25.7% greater than in C. Thus, water deficits consistently increased anthocyanin concentration by increasing content per berry and reducing fruit growth, but increased tannin concentration less and only by reducing fruit growth, except in one year where the tannin content was increased. These results demonstrate that management of vine water deficit during ripening is a much more effective tool to increase anthocyanins than tannins in Merlot grapes. [Copyright &y& Elsevier]
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- 2011
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20. Comparative transcriptomics and metabolomics analyses provide insights into thermal resistance in lettuce (Lactuca sativa L.)
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Ping Long, Guotao Huo, Lijun Luo, Wei Shiwei, Qichang Yang, Li Zhang, Xiao Yang, and Guojun Ge
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food and beverages ,Lactuca ,Horticulture ,Biology ,biology.organism_classification ,Terpene ,Transcriptome ,chemistry.chemical_compound ,Metabolomics ,Flavonoid biosynthesis ,Biochemistry ,chemistry ,Lignin ,Gene ,Transcription factor - Abstract
High temperature poses a major threat to sustainable development of the lettuce industry. Investigation of the mechanisms that regulate heat stress responses has great significance. Four lettuce accessions-two thermotolerant and two thermosensitive cultivars-were selected for comparative analysis. Subsequently, the metabolic changes in lettuce in response to heat treatment were investigated using untargeted metabolomic analysis. Several discriminatory metabolites were identified, including three amino acids, one carbohydrate, eight phenolic compounds, one terpene, one alcohol and one lignin. Transcriptomics analysis was performed in parallel using the same four lettuce accessions. The integrated analysis suggested that a large number of metabolites and genes detected with measurable changes during the heat response are involved in flavonoid biosynthesis. Additionally, 25 of the 31 transcription factors identified, including MYBs, WRKYs, NACs, bHLHs, MADSs, AP2/ERFs and bZIP, were also upregulated. Thus, this study provides a comprehensive understanding of the complex molecular mechanisms underlying the thermal stress responses of lettuce.
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- 2021
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21. Identification of metabolic pathways related to rough-skinned fruit formation in Korla pear
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Juan Xu, Aisajan Mamat, and Kuerban Tusong
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PEAR ,Sucrose ,Pulp (paper) ,food and beverages ,Fructose ,Horticulture ,engineering.material ,Metabolic pathway ,chemistry.chemical_compound ,Flavonoid biosynthesis ,chemistry ,Anthocyanin ,engineering ,Food science ,Sugar - Abstract
The formation of rough-skinned fruits is one of the major factors that adversely affect the Korla pear (Pyrus sinkiangensis Yu) fruit quality. However, little is known about the underlying mechanism of pericarp roughening. The aim of this study was to determine the metabolic pathways and biological processes involved in the formation of rough-skinned fruits using both the pericarp and pulp of normal and rough-skinned fruits. Morphological and physiological observations showed that stone cell, cellulose, hemicellulose, lignin and polysaccharide contents in both the pericarp and pulp of rough-skinned fruits were significantly higher than normal fruits. However, flavor substances like soluble sugar, fructose, glucose, and sucrose were abundant in the pulp of normal fruits. In addition, the total phenol, flavone and isoflavone contents were much higher in the pericarp of rough-skinned fruits than in that of normal fruits, while anthocyanin was abundant in the pericarp of normal fruits. Accordingly, in our metabolomic and transcriptomic analysis, the differentially accumulated metabolites (DAMs) and differentially expressed genes (DEGs) involved in flavone and flavonol biosynthesis, flavonoid biosynthesis, and phenylalanine metabolism pathways were further investigated. Moreover, we identified 33 DAMs and 84 DEGs that were enriched in the aforementioned pathways. Compared with normal fruits, these DAMs and DEGs were significantly upregulated in both the pericarp and pulp of rough-skinned fruits. Correlation analysis indicates that these identified genes encode enzymes that are responsible for the biosynthesis of DAMs identified in this study. Significant enrichment of these pathways in both the pericarp and pulp of rough-skinned fruits is probably responsible for pericarp roughening and lack of coloring in rough-skinned fruits.
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- 2021
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22. Integrated proteomics and transcriptome analysis reveal a decreased catechins metabolism in variegated tea leaves.
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Lu, Mengqian, Li, Yifan, Jia, Huiyan, Xi, Zuguo, Gao, Qijuan, Zhang, Zheng-Zhu, and Deng, Wei-Wei
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CATECHIN , *PROTEOMICS , *RNA sequencing , *TEA , *TRANSCRIPTOMES , *TEA growing , *CHLOROPLASTS , *TEA plantations - Abstract
• An ecologically insensitive variegated tea plant was studied in this research. • The component, tissue structure, gene and protein expressions were analyzed. • Reduced catechins and increased amino acids were found in variegated tea leaves. • Related genes and proteins were down-regulated in flavonoid biosynthetic pathway. • The high expression of CLH1, showed an active chlorophyll degradation in variegated leaves. Globally, tea plant (Camellia sinensis (L.) O. Kuntze) is a crucial commercial crop. In this study, a variegated tea plant identified in Huangshan, China. The variegated and residual normal leaves were used as the research material. The variegated leaves of the plant were ecologically insensitive. The components, tissue structure, gene expression patterns, and protein expression profiles of the variegated tea plant were analyzed. Ultrastructural analysis of the variegated leaves revealed that the chloroplasts of the leaves were abnormally developed, with no obvious thylakoids. Compared with normal leaves, the albino leaves had lower total catechins content and higher total free amino acid content. Through RNA sequencing and proteomic analysis, chlorophyll biosynthesis and degradation, photosynthesis, chloroplast development, and flavonoid biosynthesis of the variegated leaves were affected. The less chlorophyll content in the variegated tea leaves could probably attributed to the destruction of chloroplast structure. Besides, the relatively high expression and enzyme activity of CLH, showed an active chlorophyll degradation; the lower expression of Lhcb1, Lhcb3 ; and POR in chlorophyll synthesis, might be related to the low chlorophyll in variegated leaves. In terms of flavonoid biosynthesis, expression of the related genes was down-regulated and the target protein content of ANR, CHI) was also reduced. These results may provide insight into the catechins mechanism of such variegated phenotypes. [ABSTRACT FROM AUTHOR]
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- 2022
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23. De novo transcriptome assembly for pericarp in Litchi chinesis Sonn. cv. Feizixiao and identification of differentially expressed genes in response to Mg Foliar Nutrient
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Shijun Li, Kaibing Zhou, Zhan Wang, and Mengling Yuan
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0301 basic medicine ,De novo transcriptome assembly ,Horticulture ,Biology ,Crop ,Transcriptome ,03 medical and health sciences ,030104 developmental biology ,Differentially expressed genes ,Nutrient ,Flavonoid biosynthesis ,Gene expression ,Botany ,Gene - Abstract
Litchi is a subtropical fruit crop indigenous to South China. The pericarp of the variety Feizixiao does not display the overall bright red hue at harvest, i.e. “stay-green” phenomenon. This phenomenon could be solved by Mg foliar nutrient sprays. This study will attempt to discover the molecular mechanisms in litchi pericarp under Mg treatment by sequencing and de novo assembling the transcriptome. We assembled 50809 unigenes with an average length of 735.47 bp; approximately 55.11% (28005) of unigenes could be annotated using the NCBI (National Center of Biotechnology Information) non-redundant (nr) database. Five DGE libraries have been generated from litchi pericarp, and approximately 20 million filtered reads per library were generated. A total of 1226 unigenes were found to be differently expressed in the pair-wise comparisons between any two periods of Mg-treated, and genes encoding key enzymes involved in flavonoid biosynthesis, anthocyanin biosynthesis, ABA signal pathway were identified.
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- 2017
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24. Electrical stimulation: An abiotic stress generator for enhancing anthocyanin and resveratrol accumulation in grape berry
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Masumura Yoshiyuki, Mori Daisuke, Shunji Suzuki, Yoshinao Aoki, and Masachika Mikami
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0106 biological sciences ,0301 basic medicine ,Phenylpropanoid ,Abiotic stress ,fungi ,food and beverages ,Stimulation ,Berry ,Horticulture ,Stilbenoid ,Resveratrol ,Biology ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Flavonoid biosynthesis ,chemistry ,Anthocyanin ,Botany ,010606 plant biology & botany - Abstract
Plants are known to utilize electrical signals under several physiological conditions and electrical stimulation from the outside induces physiological changes in plants. In this study, to improve grape berry composition in field-grown grapevines, electrical stimulation of grapevine using solar panels was undertaken as an abiotic stress generator in 2015 and 2016 growing seasons. Electrical stimulation had a notable effect on grapevine growth and development as well as photosynthetic performance. Berry weight and tartaric acid and total phenolic contents in berries of grapevines exposed to electrical stimulation were similar among the grapevines tested. Brix in berries of grapevines exposed to electrical stimulation and electrode-treated grapevines was higher than that in control grapevines in both years. Electrical stimulation increased anthocyanin and resveratrol contents in berries of grapevines in both years relative to those of control grapevines and electrode-treated grapevines. The alteration of Brix and anthocyanin and resveratrol contents in berries was supported by the results of microarray analysis demonstrating the transcriptional upregulation of genes related to sucrose metabolism, phenylpropanoid biosynthesis, flavonoid biosynthesis, stilbenoid biosynthesis, and anthocyanin biosynthesis in grape cells exposed to electrical stimulation. Taken together, the results suggested that electrical stimulation of grapevine enhanced anthocyanin and resveratrol biosynthesis by activating their biosynthetic pathways.
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- 2017
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25. Exogenous dopamine improves apple fruit quality via increasing flavonoids and soluble sugar contents
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Zhijun Zhang, Qian Wu, Chao Li, Fengwang Ma, Yanpeng Wang, Shuaiyin Chen, Wang Xingchen, Yangjun Zou, and Xiao Yuan
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0106 biological sciences ,0301 basic medicine ,Malus ,Sucrose ,biology ,fungi ,food and beverages ,Fructose ,Horticulture ,biology.organism_classification ,01 natural sciences ,Tyrosine decarboxylase ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Flavonoid biosynthesis ,chemistry ,Anthocyanin ,Sugar transporter ,Food science ,Sugar ,010606 plant biology & botany - Abstract
Dopamine (DA) acts as a mediator in numerous plant physiological processes. In order to provide a basis for apple fruit quality improvements, we applied dopamine to apple trees via spraying (SDA) and watering (WDA). Five-year-old Changfu 2 (Malus domestica Borkh. cv. Naganofuji No.2) apple trees were treated with SDA or WDA in 0, 50, 100 and 200 μM. Results demonstrate that fruit fructose, sucrose and anthocyanin content, and ethylene production significantly increased for SDA100 and WDA100. Furthermore, the significant upregulation in WDA100 compared to WDA0 was observed for sugar transporter and flavonoid biosynthesis genes. Differential metabolite profiling analysis revealed the ability of flavonoids to distinguish between WDA0 and WDA100. Overexpression of the apple tyrosine decarboxylase gene MdTyDC in apple calli improved the dopamine and soluble content. This study demonstrates the role of dopamine as a regulator of the flavonoids and soluble sugar metabolism in improving apple fruit quality.
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- 2021
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26. Specific audible sound waves improve flavonoid contents and antioxidative properties of sprouts
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Soo In Lee, Muthusamy Muthusamy, Jin A Kim, Mi-Jeong Jeong, and Joo Yeol Kim
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0106 biological sciences ,0301 basic medicine ,chemistry.chemical_classification ,biology ,Chemistry ,DPPH ,fungi ,Flavonoid ,food and beverages ,Raphanus ,Lactuca ,Horticulture ,biology.organism_classification ,01 natural sciences ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Flavonoid biosynthesis ,Phytochemical ,Brassica rapa ,Food science ,Sound wave ,010606 plant biology & botany - Abstract
Recent studies have suggested that sound waves regulate the growth, phytochemical contents, and stress responses of plants. Here, we investigated the effect of different frequencies of sound waves (0.25, 0.8, 1 and 1.5 kHz) on the flavonoid contents and antioxidative properties of 1–6 day treated sprouts, including red radish (Raphanus sativus), lettuce (Lactuca sativa), and Chinese cabbage (Brassica rapa subsp. pekinensis). These sprouts were treated with each sound wave for 2 h per day for either consecutive (long term [LT]) or three alternating (1st, 3rd, and 5th) days (short term [ST]). The flavonoid contents of the sprouts were found to vary according to the sound frequency, exposure time, species, and growth conditions. A 25–88% increase in flavonoid content could be induced in the sprouts under specific conditions. Quantitative RT-PCR (qPCR) based analysis showed that the expression patterns of the flavonoid biosynthesis-related genes were correlated with the flavonoid contents observed in each treatment suggesting that sound waves regulate the flavonoid biosynthesis pathway. In addition, DPPH and FRAP assays indicated that the antioxidative effects of the sprouts were significantly higher under certain sound wave treatments. Furthermore, the flavonoid accumulation was positively correlated with the antioxidative properties of the sprouts. Therefore, sound waves with a particular frequency could be used to improve the phytochemical contents of crops for functional products.
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- 2021
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27. Influence of shade on flavonoid biosynthesis in tea (Camellia sinensis (L.) O. Kuntze)
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Yajun Liu, Yunsheng Wang, Liping Gao, Yu Shan, YanWei Tian, and Tao Xia
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chemistry.chemical_classification ,Chalcone synthase ,biology ,fungi ,Flavonoid ,food and beverages ,Phenylalanine ammonia-lyase ,Horticulture ,carbohydrates (lipids) ,chemistry.chemical_compound ,Flavonols ,Flavonoid biosynthesis ,chemistry ,Anthocyanin ,Botany ,biology.protein ,Camellia sinensis ,Food science ,Flavanone - Abstract
Tea ( Camellia sinensis (L.) O. Kuntze) is a commercially important crop valued for its secondary metabolites. Different cultivation methods affect tea quality by altering the biosynthesis of flavonoids. Shade can effectively improve the quality of tea beverages by causing reduction of the concentration of flavonoids, the main compounds that contribute to astringency, in the leaves. The aim of this study was to analyze the influence of shade on flavonoid biosynthesis in relation to expression of the flavonoid pathway genes in tea leaves. Our data revealed that shade had notable effects on both flavonoid (including catechins, O -glycosylated flavonols and proanthocyanins (PAs)) and lignin biosynthesis, but had no significant effect on anthocyanin accumulation. Among all the detected compounds, the concentration of PAs and O -glycosylated flavonols in shaded leaves changed more than other compounds, decreasing 53.37% and 43.26%, respectively, compared to the sunlight-exposed leaves. Expression of phenylalanine ammonialyase ( PAL ), flavanone 3-hydroxylase ( F3H ), flavonoid 3′-hydroxylase ( F3 ′ H ), dihydroflavonol reductase ( DFR ) and anthocyanidin reductase1 ( ANR1 ) was notably correlated with the concentration of PAs in leaves, and expression of chalcone synthase ( CHS ) and flavonoid 3′,5′-hydroxylase ( F3 ′ 5 ′ H ) was remarkably correlated with the concentration of O -glycosylated flavonols. It is suggested that polymerization of catechins and glycosylation of flavonols might be key pathways of flavonoid metabolism in tea leaves affected by shade treatment. Regarding phenolic acids, a marked increase in concentration in shaded leaves and negative correlation with lignin accumulation suggests that phenolic acids might compete for the same substrate with lignins and flavonoids in tea leaves under different illumination conditions. Further investigations are required to understand the relationship between phenolic acids and other flavonoid compounds in tea plants.
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- 2012
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28. Identification and analysis of differentially expressed proteins during cotyledon embryo stage in longan
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Hao Liu, Ji-mou Jiang, Zhao-xia Weng, Wei Chen, Jing Wang, Wenyu Liang, and Chi-Lien Cheng
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food.ingredient ,Embryogenesis ,Protein metabolism ,food and beverages ,Embryo ,Metabolism ,Horticulture ,Biology ,Nucleic acid metabolism ,chemistry.chemical_compound ,food ,Flavonoid biosynthesis ,Biochemistry ,chemistry ,Secondary metabolism ,Cotyledon - Abstract
The cotyledon stage is a crucial developmental stage during longan embryo development. Two-dimensional electrophoresis (2-DE) and matrix-assisted laser desorption ionization-time of flight-tandem mass spectrometry (MALDI-TOF/TOF-MS) were conducted to separate and identify proteins expressed in the longan cotyledon embryos at different development stages. A total of 28 proteins that exhibited regulated expression were successfully identified with a protein identification success rate of 72.2%. The 28 proteins were assigned to six functional classes based on their putative biological functions: energy and metabolism (21%), secondary metabolism (18%), protein metabolism (21%), cell division (11%), antioxidation (4%), nucleic acid metabolism (4%), hormonal regulation (4%) and unknown proteins (18%). Interestingly, three enzymes involved in flavonoid biosynthesis, whose expression in embryos had not been observed previously were clearly up-regulated during the cotyledon stage of embryo development in longan. Identification and analysis of the 28 proteins would shed new lights on further understanding of the biochemical and physiological processes of the embryo development at cotyledon stage in longan.
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- 2010
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29. Expression of chalcone synthase and chalcone isomerase genes and accumulation of corresponding flavonoids during fruit maturation of Guoqing No. 4 satsuma mandarin (Citrus unshiu Marcow)
- Author
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Yong Wang, Jing Li, and Renxue Xia
- Subjects
Chalcone isomerase ,Chalcone synthase ,chemistry.chemical_classification ,biology ,Narirutin ,Flavonoid ,food and beverages ,Ripening ,Horticulture ,biology.organism_classification ,Citrus unshiu ,Hesperidin ,chemistry.chemical_compound ,Flavonoid biosynthesis ,chemistry ,Biochemistry ,biology.protein - Abstract
Chalcone synthase (CHS) and chalcone isomerase (CHI) are two key genes involved in flavonoid biosynthesis. They were both cloned from Guoqing No. 4 satsuma mandarin (Citrus unshiu Marcow), and their relative expression and accumulation of corresponding flavonoid components during fruit maturation were investigated by real-time PCR and HPLC techniques, respectively. During fruit maturation, expression of CHS and CHI genes declined gradually in peels, as well as the concentrations of total flavonoids, trans-chalcone, narirutin and hesperidin; in pulps, however, expression of both genes showed an approximately uptrend, and the concentrations of total flavonoids and those three components were detected in a lower level without significant changes among different developmental periods (P
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- 2010
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30. Identification of differentially expressed genes during flower opening by suppression subtractive hybridization and cDNA microarray analysis in Eustoma grandiflorum
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Yuhua Li, Taku Saito, Saneyuki Kawabata, and Bo Zhou
- Subjects
biology ,cDNA library ,fungi ,food and beverages ,Horticulture ,Xyloglucan endotransglucosylase ,biology.organism_classification ,Molecular biology ,Gene expression profiling ,Flavonoid biosynthesis ,Suppression subtractive hybridization ,Eustoma ,Complementary DNA ,DNA microarray - Abstract
The forward and reverse suppression subtractive cDNA libraries were constructed in petals of Eustoma grandiflorum at bud stage (stage 1) and anthesis (stage 7). Approximately 1000 clones were isolated from stage 1- (S1) and stage 7-specific (S7) libraries. The clones were sequenced and assembled, which yielded 98 contigs and 444 singletons. BLAST search was conducted on these assembled sequences. Generally, probes isolated from the S7 library exhibited higher expression at stage 7 by microarray analysis, as did those of the S1 library at stage 1. A clone set from the S7 library contained genes from later steps of anthocyanin biosynthesis pathway, terpene synthases, GAST (gibberellic acid-stimulated) family proteins, xyloglucan endotransglucosylase/hydrolase, glycosidases, and stress- and senescence-related proteins. In contrast, the S1 library contained genes associated with flavonol biosynthesis, phenylpropanoid metabolism, terpenoid metabolism, and floral organ development. Gene expression profiling for flavonoid biosynthesis was in accordance with preferential accumulation of flavonols at bud stages and anthocyanins at anthesis.
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- 2009
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31. Isolation and expression analysis of flavonoid biosynthesis genes in evergreen azalea
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Nobuo Kobayashi, Ikuo Miyajima, Akira Nakatsuka, Yutaka Kii, and Daiki Mizuta
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Chalcone synthase ,Chalcone isomerase ,Genetics ,biology ,fungi ,Structural gene ,food and beverages ,Horticulture ,Molecular biology ,Flavonoid biosynthesis ,Gene expression ,biology.protein ,Flavonol synthase ,Petal ,Azalea - Abstract
As a tool for breeding new floral colors into azalea, we obtained basic gene information for flavonoid synthesis in floral tissues of azalea ( Rhododendron × pulchrum Sweet cv. Oomurasaki). The partial- or full-length cDNA sequences of eight structural genes involved in the flavonoid biosynthetic pathway were isolated: chalcone synthase (CHS), chalcone isomerase (CHI), flavonone-3-hydroxylase (F3H), flavonoid-3′hydroxylase (F3′H), flavonoid-3′,5′-hydroxylase (F3′5′H), dihydroflavonol reductase (DFR), anthocyanidin synthase (ANS), and flavonol synthase (FLS). These genes were isolated from petals of R. × pulchrum by PCR using degenerate and gene-specific primers and their expression levels were analyzed. Deduced amino acid sequences of obtained genes showed 76–80% identities with the corresponding flavonoid biosynthetic pathway sequences from other dicotyledonous species. Expression of these eight genes during azalea flower development was investigated. A real-time PCR analysis showed that transcripts of CHS , F3H and ANS genes decreased as flowering progressed, and those of CHI , DFR , F3 ′ H , and FLS genes transiently increased at the stage of pigmentation initiation. In addition, maximum expression of the F3 ′ 5 ′ H gene was expressed concomitant with anthocyanin synthesis. Spatial expression showed that the CHS , DFR , and FLS genes are more abundant in other floral organs or leaves than petals. The levels of CHI , F3H , ANS , and F3 ′ H gene transcripts were highest in leaf tissue compared with floral organs. The highest level of F3 ′ 5 ′ H expression was in the petal at stage 3. These results indicated that F3 ′ 5 ′ H gene is strongly correlated to pigmentation in azalea petals, but expression of other genes are unclear for anthocyanin synthesis.
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- 2008
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32. Stimulation of ‘Fuji’ apple skin color by ethephon and phosphorus–calcium mixed compounds in relation to flavonoid synthesis
- Author
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Shuichi Iwahori, Zhenghua Li, and Hiroshi Gemma
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chemistry.chemical_classification ,Chalcone isomerase ,Flavonoid ,Phenylalanine ammonia-lyase ,Horticulture ,chemistry.chemical_compound ,Flavonols ,Flavonoid biosynthesis ,chemistry ,Biochemistry ,Anthocyanin ,Phenols ,Food science ,Ethephon - Abstract
The effect of ethephon (2-chloroethyl phosphonic acid) and a seniphos-like substance (SLS) (a mixture of 310 g/l P 2 O 5 , 56 g/l CaO and 30 g/l N: 1% NO 3 and 2% NH 3 ) on the coloring of skin of ‘Fuji’ apple were studied. Both treatments applied 4 weeks before commercial harvest, caused an enhancement of red peel color and an increase in concentration of flavonoid compounds. Anthocyanin, proanthocyanidins and flavonols showed different accumulation pattern with different treatments during fruit maturation, but eventually became similar concentrations at harvest. ACC (1-aminocyclopropane-1-carboxylic acid) oxidase activity and internal ethylene concentration were greatly increased by the ethephon treatment but slightly by SLS treatment. The ethephon treatment increased greatly the chalcone isomerase (CHI) activity, and moderately phenylalanine-ammonia lyase (PAL) activity, but showed no effect on UDP-3- O -galactosyltransferase (UFGalT), all of which are involved in flavonoid biosynthesis. On the other hand, the SLS increased PAL and UFGalT activities greatly and CHI activity moderately.
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- 2002
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33. Flavonoid biosynthesis in white-flowered Sim carnations (Dianthus caryophyllus)
- Author
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Hiroyuki Yoshida, Hiroshi Ikeda, Michio Shibata, Yoshio Itoh, Daisuke Higeta, Takashi Onozaki, Yoshihiro Ozeki, Masami Mato, and Yasuko Yoshimoto
- Subjects
chemistry.chemical_classification ,Dianthus ,fungi ,Flavonoid ,food and beverages ,Caryophyllaceae ,Carnation ,Horticulture ,Biology ,biology.organism_classification ,chemistry.chemical_compound ,Flavonoid biosynthesis ,chemistry ,Anthocyanin ,Botany ,Flavanone ,Anthocyanidin - Abstract
Analysis of flavonoid composition and gene expression of enzymes involved in anthocyanin synthesis in flowers of four acyanic and one cyanic cultivar of Sim carnation showed that the acyanic flower cultivars are divided into three types. The first includes two normal white cultivars, ‘U Conn Sim’ and ‘White Sim’; the second includes a nearly pure white cultivar, ‘Kaly’; and the third includes a nearly pure white cultivar, ‘White Mind’. ‘U Conn Sim’ and ‘White Sim’ accumulated flavonol glycosides and lacked anthocyanins. The transcription of the several genes of enzymes involved in flavonoid biosynthesis were reduced at a later flowering stage than the cyanic cultivar, especially the genes encoding dihydroflavonol 4-reductase and anthocyanidin synthase. ‘Kaly’ accumulated flavanone glycosides and a small amount of flavonol and flavone glycosides by blocking the transcription of the gene encoding flavanone 3-hydroxylase, in addition to the transcriptional reduction of the genes for flavonoid biosynthesis at a later flowering stage. Although ‘White Mind’ contains little flavonoid, the position of the block on flavonoid biosynthesis in ‘White Mind’ is not known.
- Published
- 2000
- Full Text
- View/download PDF
34. Differences in flower color and pigment composition among white carnation (Dianthus caryophyllus L.) cultivars
- Author
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Masami Mato, Takashi Onozaki, Hiroshi Ikeda, and Michio Shibata
- Subjects
chemistry.chemical_classification ,Dianthus ,fungi ,food and beverages ,Caryophyllaceae ,Carnation ,Horticulture ,Biology ,biology.organism_classification ,chemistry.chemical_compound ,Flavonols ,Flavonoid biosynthesis ,chemistry ,Botany ,Petal ,Cultivar ,Kaempferol - Abstract
Measurement of flower colors with a color analyzer showed significant differences among 13 white carnation (Dianthus caryophyllus L.) cultivars. Petals of three cultivars, `White Mind', `Kaly' and `White Barbara', were nearly pure white, compared with the other 10 cultivars. Analysis of pigment composition by two-dimensional thin-layer chromatography classified 13 white cultivars into three types. The nearly pure-white cultivar, `White Mind' lacked flavonoid compounds in the petals. `Kaly' and `White Barbara' accumulated a large amount of naringenin derivatives. The other normal white cultivars contained kaempferol derivatives as the major flavonoid. We concluded that `White Mind', `Kaly' and `White Barbara' were nearly pure white because they lack flavonols, such as kaempferol derivatives. Our results suggest that in `White Mind', the flavonoid biosynthesis pathway is blocked before chalcone synthesis, whereas in `Kaly' and `White Barbara' it is blocked at the flavanone-3-hydroxylase step.
- Published
- 1999
- Full Text
- View/download PDF
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