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1. The AusTraits plant dictionary

Author

Elizabeth H. Wenk, Hervé Sauquet, Rachael V. Gallagher, Rowan Brownlee, Carl Boettiger, David Coleman, Sophie Yang, Tony Auld, Russell Barrett, Timothy Brodribb, Brendan Choat, Lily Dun, David Ellsworth, Carl Gosper, Lydia Guja, Gregory J. Jordan, Tom Le Breton, Andrea Leigh, Patricia Lu-Irving, Belinda Medlyn, Rachael Nolan, Mark Ooi, Karen D. Sommerville, Peter Vesk, Matthew White, Ian J. Wright, and Daniel S. Falster

Subjects
Science
Abstract

Abstract Traits with intuitive names, a clear scope and explicit description are essential for all trait databases. The lack of unified, comprehensive, and machine-readable plant trait definitions limits the utility of trait databases, including reanalysis of data from a single database, or analyses that integrate data across multiple databases. Both can only occur if researchers are confident the trait concepts are consistent within and across sources. Here we describe the AusTraits Plant Dictionary (APD), a new data source of terms that extends the trait definitions included in a recent trait database, AusTraits. The development process of the APD included three steps: review and formalisation of the scope of each trait and the accompanying trait description; addition of trait metadata; and publication in both human and machine-readable forms. Trait definitions include keywords, references, and links to related trait concepts in other databases, enabling integration of AusTraits with other sources. The APD will both improve the usability of AusTraits and foster the integration of trait data across global and regional plant trait databases.

Published
2024
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2. AusTraits, a curated plant trait database for the Australian flora

Author

Daniel Falster, Rachael Gallagher, Elizabeth H. Wenk, Ian J. Wright, Dony Indiarto, Samuel C. Andrew, Caitlan Baxter, James Lawson, Stuart Allen, Anne Fuchs, Anna Monro, Fonti Kar, Mark A. Adams, Collin W. Ahrens, Matthew Alfonzetti, Tara Angevin, Deborah M. G. Apgaua, Stefan Arndt, Owen K. Atkin, Joe Atkinson, Tony Auld, Andrew Baker, Maria von Balthazar, Anthony Bean, Chris J. Blackman, Keith Bloomfield, David M. J. S. Bowman, Jason Bragg, Timothy J. Brodribb, Genevieve Buckton, Geoff Burrows, Elizabeth Caldwell, James Camac, Raymond Carpenter, Jane A. Catford, Gregory R. Cawthray, Lucas A. Cernusak, Gregory Chandler, Alex R. Chapman, David Cheal, Alexander W. Cheesman, Si-Chong Chen, Brendan Choat, Brook Clinton, Peta L. Clode, Helen Coleman, William K. Cornwell, Meredith Cosgrove, Michael Crisp, Erika Cross, Kristine Y. Crous, Saul Cunningham, Timothy Curran, Ellen Curtis, Matthew I. Daws, Jane L. DeGabriel, Matthew D. Denton, Ning Dong, Pengzhen Du, Honglang Duan, David H. Duncan, Richard P. Duncan, Marco Duretto, John M. Dwyer, Cheryl Edwards, Manuel Esperon-Rodriguez, John R. Evans, Susan E. Everingham, Claire Farrell, Jennifer Firn, Carlos Roberto Fonseca, Ben J. French, Doug Frood, Jennifer L. Funk, Sonya R. Geange, Oula Ghannoum, Sean M. Gleason, Carl R. Gosper, Emma Gray, Philip K. Groom, Saskia Grootemaat, Caroline Gross, Greg Guerin, Lydia Guja, Amy K. Hahs, Matthew Tom Harrison, Patrick E. Hayes, Martin Henery, Dieter Hochuli, Jocelyn Howell, Guomin Huang, Lesley Hughes, John Huisman, Jugoslav Ilic, Ashika Jagdish, Daniel Jin, Gregory Jordan, Enrique Jurado, John Kanowski, Sabine Kasel, Jürgen Kellermann, Belinda Kenny, Michele Kohout, Robert M. Kooyman, Martyna M. Kotowska, Hao Ran Lai, Etienne Laliberté, Hans Lambers, Byron B. Lamont, Robert Lanfear, Frank van Langevelde, Daniel C. Laughlin, Bree-Anne Laugier-Kitchener, Susan Laurance, Caroline E. R. Lehmann, Andrea Leigh, Michelle R. Leishman, Tanja Lenz, Brendan Lepschi, James D. Lewis, Felix Lim, Udayangani Liu, Janice Lord, Christopher H. Lusk, Cate Macinnis-Ng, Hannah McPherson, Susana Magallón, Anthony Manea, Andrea López-Martinez, Margaret Mayfield, James K. McCarthy, Trevor Meers, Marlien van der Merwe, Daniel J. Metcalfe, Per Milberg, Karel Mokany, Angela T. Moles, Ben D. Moore, Nicholas Moore, John W. Morgan, William Morris, Annette Muir, Samantha Munroe, Áine Nicholson, Dean Nicolle, Adrienne B. Nicotra, Ülo Niinemets, Tom North, Andrew O’Reilly-Nugent, Odhran S. O’Sullivan, Brad Oberle, Yusuke Onoda, Mark K. J. Ooi, Colin P. Osborne, Grazyna Paczkowska, Burak Pekin, Caio Guilherme Pereira, Catherine Pickering, Melinda Pickup, Laura J. Pollock, Pieter Poot, Jeff R. Powell, Sally A. Power, Iain Colin Prentice, Lynda Prior, Suzanne M. Prober, Jennifer Read, Victoria Reynolds, Anna E. Richards, Ben Richardson, Michael L. Roderick, Julieta A. Rosell, Maurizio Rossetto, Barbara Rye, Paul D. Rymer, Michael A. Sams, Gordon Sanson, Hervé Sauquet, Susanne Schmidt, Jürg Schönenberger, Ernst-Detlef Schulze, Kerrie Sendall, Steve Sinclair, Benjamin Smith, Renee Smith, Fiona Soper, Ben Sparrow, Rachel J. Standish, Timothy L. Staples, Ruby Stephens, Christopher Szota, Guy Taseski, Elizabeth Tasker, Freya Thomas, David T. Tissue, Mark G. Tjoelker, David Yue Phin Tng, Félix de Tombeur, Kyle Tomlinson, Neil C. Turner, Erik J. Veneklaas, Susanna Venn, Peter Vesk, Carolyn Vlasveld, Maria S. Vorontsova, Charles A. Warren, Nigel Warwick, Lasantha K. Weerasinghe, Jessie Wells, Mark Westoby, Matthew White, Nicholas S. G. Williams, Jarrah Wills, Peter G. Wilson, Colin Yates, Amy E. Zanne, Graham Zemunik, and Kasia Ziemińska

Subjects
Science
Abstract

Measurement(s) plant trait Technology Type(s) digital curation Sample Characteristic - Organism Viridiplantae Sample Characteristic - Location Australia Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.14545755

Published
2021
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3. AusTraits, a curated plant trait database for the Australian flora

Author

Robert M. Kooyman, Richard P. Duncan, Ben Sparrow, Ning Dong, Christopher Szota, Hans Lambers, Andrew G. Baker, Timothy J. Curran, Samuel C. Andrew, Guy Taseski, Anthony Manea, Maria von Balthazar, David H. Duncan, Peter A. Vesk, Catherine Marina Pickering, Ellen M. Curtis, Andrea López-Martinez, Chris J. Blackman, David Cheal, Caroline E. R. Lehmann, John M. Dwyer, Caio Guilherme Pereira, Susan G. Laurance, Anthony Bean, Tom North, Karel Mokany, Steve J. Sinclair, Margaret M. Mayfield, Nicholas S.G. Williams, Brad Oberle, Owen K. Atkin, Ashika Jagdish, Matthew I. Daws, John Joseph Kanowski, Lydia K. Guja, William K. Cornwell, Martyna M. Kotowska, Angela T. Moles, Martin Henery, Amy E. Zanne, Benjamin Smith, Elizabeth M. Tasker, Raymond J. Carpenter, Maurizio Rossetto, Per Milberg, Sabine Kasel, Melinda Pickup, Maria S. Vorontsova, Nigel W. M. Warwick, David T. Tissue, John W. Morgan, Ülo Niinemets, Meredith Cosgrove, Gregory J. Jordan, Susanna Venn, James Lawson, Matthew D. Denton, James S. Camac, Barbara Rye, Jarrah Wills, Erik J. Veneklaas, Tara Angevin, Joe Atkinson, Neil C. Turner, Carl R. Gosper, Tony Auld, Victoria A. Reynolds, John Huisman, Elizabeth Caldwell, Bree Anne Laugier-Kitchener, Nicholas Moore, Udayangani Liu, Christopher H. Lusk, Jugoslav Ilic, Marlien van der Merwe, Helen G. Coleman, Hannah McPherson, Odhran S. O'Sullivan, Erika Cross, Tanja Lenz, Graham Zemunik, Stuart Allen, Annette Muir, Ernst Detlef Schulze, Susanne Schmidt, James D. Lewis, Hervé Sauquet, Cate Macinnis-Ng, Elizabeth Wenk, Michelle R. Leishman, Mark G. Tjoelker, Jane A. Catford, Carlos Fonseca, Guomin Huang, Daniel Jin, Etienne Laliberté, William K. Morris, Samantha E. M. Munroe, Ian J. Wright, Rachel J. Standish, Honglang Duan, Andrew O’Reilly-Nugent, Iain Colin Prentice, Geoff Burrows, Peta L. Clode, Colin J. Yates, James K. McCarthy, Alex R. Chapman, Lesley Hughes, Alexander W. Cheesman, Michael L. Roderick, Genevieve Buckton, Ruby E. Stephens, Lucas A. Cernusak, Suzanne M. Prober, Mark Westoby, Brendan J. Lepschi, Jennifer L. Funk, Jason G. Bragg, Janice M. Lord, Burak K. Pekin, Carolyn Vlasveld, Renee Smith, Collin W. Ahrens, Jennifer Firn, Dieter F. Hochuli, Deborah M. G. Apgaua, Laura J. Pollock, Fonti Kar, Daniel J. Metcalfe, Freya Thomas, Dean Nicolle, Jocelyn Howell, Adrienne B. Nicotra, Julieta A. Rosell, Lasantha K. Weerasinghe, Jennifer Read, Gordon Drummond Sanson, Michael A. Sams, Jürg Schönenberger, Amy K. Hahs, Ben Richardson, Robert Lanfear, Mark K. J. Ooi, Anna Monro, Marco F. Duretto, Frank van Langevelde, Yusuke Onoda, Saskia Grootemaat, Kasia Ziemińska, Patrick E. Hayes, Grazyna Paczkowska, Kyle W. Tomlinson, Ben J. French, Pengzhen Du, Stefan K. Arndt, Kristine Y. Crous, Jessie A. Wells, David Y. P. Tng, Philip K. Groom, Daniel C. Laughlin, Sally A. Power, Manuel Esperón-Rodríguez, Paul D. Rymer, Colin P. Osborne, Oula Ghannoum, Keith J. Bloomfield, Lynda D. Prior, Byron B. Lamont, Áine Nicholson, Trevor Meers, Daniel S. Falster, Pieter Poot, Charles A. Warren, Dony Indiarto, Michele Kohout, Sean M. Gleason, Timothy L. Staples, Caitlan Baxter, Susana Magallón, Enrique Jurado, Félix de Tombeur, Matthew Alfonzetti, Ben D. Moore, Doug Frood, Susan E. Everingham, Peter G. Wilson, David M. J. S. Bowman, Emma F. Gray, Gregory Chandler, Matthew White, John R. Evans, Hao Ran Lai, Gregory R. Cawthray, Greg R. Guerin, Anne Fuchs, Sonya R. Geange, Caroline L. Gross, Jane L. DeGabriel, Fiona M. Soper, Claire Farrell, Matthew T. Harrison, Andrea Leigh, Anna E. Richards, Timothy J. Brodribb, Rachael V. Gallagher, Brendan Choat, Jürgen Kellermann, Mark A. Adams, Belinda Kenny, Kerrie M. Sendall, Jeff R. Powell, Si-Chong Chen, Cheryl Edwards, Saul A. Cunningham, Michael D. Crisp, Felix K. S. Lim, Brook Clinton, Evolution and Ecology Research Centre [UNSW Sydney], School of Biological, Earth and Environmental Sciences [Sydney] (BEES), University of New South Wales [Sydney] (UNSW)-University of New South Wales [Sydney] (UNSW), Western Sydney University, Macquarie University [Sydney], CSIRO Land and Water, Commonwealth Scientific and Industrial Research Organisation [Canberra] (CSIRO), Nanchang Institute of Technology, Université de Montréal (UdeM), Botanique et Modélisation de l'Architecture des Plantes et des Végétations (UMR AMAP), and Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)

Subjects
0106 biological sciences, Statistics and Probability, Data Descriptor, Flora, Databases, Factual, Evolution, Science, Ecology (disciplines), Biodiversity, Oceanografi, hydrologi och vattenresurser, Library and Information Sciences, computer.software_genre, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, 010603 evolutionary biology, 01 natural sciences, Education, Oceanography, Hydrology and Water Resources, [SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems, Information system, Life Science, Plant Physiological Phenomena, Scope (project management), Database, Ecology, Australia, Plants, 15. Life on land, [SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics, PE&RC, Field (geography), Computer Science Applications, Phenotype, Taxon, Geography, Wildlife Ecology and Conservation, WIAS, Trait, [SDE.BE]Environmental Sciences/Biodiversity and Ecology, Statistics, Probability and Uncertainty, computer, 010606 plant biology & botany, Information Systems
Abstract

We introduce the AusTraits database - a compilation of values of plant traits for taxa in the Australian flora (hereafter AusTraits). AusTraits synthesises data on 448 traits across 28,640 taxa from field campaigns, published literature, taxonomic monographs, and individual taxon descriptions. Traits vary in scope from physiological measures of performance (e.g. photosynthetic gas exchange, water-use efficiency) to morphological attributes (e.g. leaf area, seed mass, plant height) which link to aspects of ecological variation. AusTraits contains curated and harmonised individual- and species-level measurements coupled to, where available, contextual information on site properties and experimental conditions. This article provides information on version 3.0.2 of AusTraits which contains data for 997,808 trait-by-taxon combinations. We envision AusTraits as an ongoing collaborative initiative for easily archiving and sharing trait data, which also provides a template for other national or regional initiatives globally to fill persistent gaps in trait knowledge., Measurement(s)plant traitTechnology Type(s)digital curationSample Characteristic - OrganismViridiplantaeSample Characteristic - LocationAustralia Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.14545755

Published
2021
Full Text
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