23 results on '"Agrawal R"'
Search Results
2. Enhancing genomic disorder prediction through Feynman Concordance and Interpolated Nearest Centroid techniques.
- Author
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Singh S, Shukla G, Agrawal R, Dhule C, Allabun S, Alqahtani MS, Othman M, Abbas M, and Soufiene BO
- Subjects
- Humans, Algorithms, Genome, Human, Computational Biology methods, Genomics methods
- Abstract
Clinical biomedical applications of genomic technologies are extensive and provide possibilities to enhance healthcare covering the span of medical talents. Genome disorder prediction is an important issue in biomedical research. Genome disorders cause multivariate diseases such as cancer, dementia, diabetes, Leigh syndrome, etc. Existing machine and deep learning-based methods were introduced to forecast genome disorders. However, the genome prediction outcomes were not sufficient. To address this issue, propose a new method called Quadratic Feynman Polynomial Interpolated and Vector Nearest Centroid-based (QFPI-VNC) for acutely predicting the genome disorder with improved sensitivity and specificity. First, we utilized medical data about children from a public genomes dataset and applied it to Linear Quadratic and Feynman Kac Genome filtering to obtain computationally efficient filtered results. Next, the results are fed to the Concordance Correlated Polynomial Interpolation with the purpose of extracting genome wide data in an accurate manner. Finally, the features extracted are fused and fed to the Support Vector and Nearest Centroid model for genome disorder prediction. Experimental investigations of the proposed method employing the genome dataset confirm that the performance of the proposed method is prospective and in the scope of acceptance with relative to state-of-the-art methods in terms of convergence speed, recognition rate, sensitivity, and specificity. Results suggest that the QFPI-VNC method produces the best performance with a higher genome disease detection rate by 14%, accuracy by 11%, sensitivity by 14% specificity by 12%, and lesser convergence speed by 29% than compared to state-of-the-art methods., Competing Interests: Declarations Competing interests The authors declare no competing interests., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
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3. Age related grid-wise spatial analysis of choroidal parameters in well characterised healthy population.
- Author
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Kumar M, Trinh M, Zhang A, Wei X, Agrawal R, and Nivison-Smith L
- Subjects
- Humans, Middle Aged, Adult, Male, Female, Aged, Retrospective Studies, Young Adult, Aging physiology, Tomography, Optical Coherence methods, Spatial Analysis, Healthy Volunteers, Choroid diagnostic imaging, Choroid blood supply
- Abstract
Choroidal vascularity index (CVI) is an image-based metric applied to assess the choroid in disease but poorly explored in natural aging. In this retrospective cohort study, we assessed a single eye of 309 healthy individuals from 20 to 70 + years, and quantified spatial topography of total choroidal area (TCA), luminal area (LA), stromal area (SA) and CVI (LA: TCA) in cluster and standard retinal templates using a semi-automated approach. CVI was found to be greatest in the central vs. periphery (CVI
central 67.08% [66.85-67.73] vs. CVIperiphery 65.68% [65.32-66.01], p < 0.01). In this study, CVI also showed no significant change with age or physiological factors. Area parameters demonstrated greater magnitude in the central versus periphery but with a superior bias: TCAsuperior 0.227mm2 [0.223-0.233] vs. TCAinferior 0.207mm2 [0.201-0.213], p < 0.01.They also showed a linear decline with age (TCA:-0.00112 to -0.00169 mm2 /year; LA: -0.00074 to -0.00112 mm2 /year; SA: -0.00039 to -0.00056 mm2 /year, p < 0.0001), with a higher rate of decline inferiorly (p < 0.001). This study demonstrates that CVI exhibits specific spatial differences across macula, independent of age. It further establishes a comprehensive, normative database of CVI and other choroidal angioarchitecture metrics which is a valuable resource for distinguishing pathological changes from normal age-related variations in future assessments of choroid-involving diseases., (© 2024. The Author(s).)- Published
- 2024
- Full Text
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4. Design of EEG based thought identification system using EMD & deep neural network.
- Author
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Agrawal R, Dhule C, Shukla G, Singh S, Agrawal U, Alsubaie N, Alqahtani MS, Abbas M, and Soufiene BO
- Subjects
- Humans, Brain-Computer Interfaces, Signal Processing, Computer-Assisted, Algorithms, Deep Learning, Brain physiology, Brain physiopathology, Electroencephalography methods, Neural Networks, Computer
- Abstract
Biological communication system for neurological disorder patients is similar to the Brain Computer Interface in a way that it facilitates the connection to the outside world in real time. The interdisciplinary field of Electroencephalogram based message depiction is gaining importance as it assists the paralysed person to communicate. In the proposed method a novel approach of feature extraction is done by Empirical Mode Decomposition on non- stationary & non-linear kind of EEG signal. EMD helps in the effective time frequency analysis by disintegrating the EEG signal in the form of six Intrinsic Mode Functions with help of the frequency components. In all nine features are extracted from the decomposed IMFs so as to predict the states or messages of the patient. The above computed features are then served to the Deep Neural Network to perform the classification. The performance of suggested method is studied through applying it to the acquired database generated by the designed hardware as well as also in real time message depiction. The maximum classification accuracy 97% for the acquired database & 85% in real time are obtained respectively by comparative analysis. The command messages generated from the proposed system helps the person suffering from neurological disorder to establish the communication link with the outside world in an efficient way. Thus, the proposed novel method shows better performance in real time message depiction purpose as related to other existing methods., (© 2024. The Author(s).)
- Published
- 2024
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5. Point biserial correlation symbiotic organism search nanoengineering based drug delivery for tumor diagnosis.
- Author
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Shukla G, Singh S, Dhule C, Agrawal R, Saraswat S, Al-Rasheed A, Alqahtani MS, and Soufiene BO
- Subjects
- Humans, Drug Delivery Systems, Nanotechnology methods, Pharmaceutical Preparations, Glioblastoma, Nanostructures, Nanoparticles chemistry
- Abstract
Nanoparticulate systems have the prospect of accounting for a new making of drug delivery systems. Nanotechnology is manifested to traverse the hurdle of both physical and biological sciences by implementing nanostructures indistinct fields of science, particularly in nano-based drug delivery. The low delivery efficiency of nanoparticles is a critical obstacle in the field of tumor diagnosis. Several nano-based drug delivery studies are focused on for tumor diagnosis. But, the nano-based drug delivery efficiency was not increased for tumor diagnosis. This work proposes a method called point biserial correlation symbiotic organism search nanoengineering-based drug delivery (PBC-SOSN). The objective and aim of the PBC-SOSN method is to achieve higher drug delivery efficiency and lesser drug delivery time for tumor diagnosis. The contribution of the PBC-SOSN is to optimized nanonengineering-based drug delivery with higher r drug delivery detection rate and smaller drug delivery error detection rate. Initially, raw data acquired from the nano-tumor dataset, and nano-drugs for glioblastoma dataset, overhead improved preprocessed samples are evolved using nano variational model decomposition-based preprocessing. After that, the preprocessed samples as input are subjected to variance analysis and point biserial correlation-based feature selection model. Finally, the preprocessed samples and features selected are subjected to symbiotic organism search nanoengineering (SOSN) to corroborate the objective. Based on these findings, point biserial correlation-based feature selection and a symbiotic organism search nanoengineering were tested for their modeling performance with a nano-tumor dataset and nano-drugs for glioblastoma dataset, finding the latter the better algorithm. Incorporated into the method is the potential to adjust the drug delivery detection rate and drug delivery error detection rate of the learned method based on selected features determined by nano variational model decomposition for efficient drug delivery., (© 2024. The Author(s).)
- Published
- 2024
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6. Rice straw-derived cellulose: a comparative study of various pre-treatment technologies and its conversion to nanofibres.
- Author
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Sharma N, Allardyce BJ, Rajkhowa R, and Agrawal R
- Abstract
Rice straw is a waste product generated after the harvesting of rice crops and is commonly disposed of by burning it off in open fields. This study explored the potential for the extraction and conversion of cellulose to cellulose nanofibres (CNFs) to be used as smart delivery systems for fertilizers applications. In this study, alkali, steam explosion, and organosolv treatments were investigated for cellulose extraction efficiency. The morphological characterization of cellulose showed smooth fibrillar structures. Fourier transform infrared spectroscopy represented significant removal of non-cellulosic components in treatments. The crystallinity increased from 52.2 to 65% in CNFs after fibrillation. Cellulose nanofibres (CNFs) had an average diameter of 37.4 nm and - 25.2 mV surface charges as determined by SEM and zeta potential, respectively, which have desired properties for holding fertilizers. Therefore, this study paves the way for value-added uses of rice straw as alternatives to current environmentally harmful practices., (© 2023. The Author(s).)
- Published
- 2023
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7. Minimally invasive procedure for optic disc pit maculopathy: vitrectomy with scleral plug and analysis on pattern of resolution.
- Author
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Khatri A, Shrestha SM, Prasai G, Pandit K, Bajgai P, Agrawal R, and Gupta V
- Subjects
- Humans, Vitrectomy, Retrospective Studies, Minimally Invasive Surgical Procedures, Optic Disk, Retinal Diseases, Macular Degeneration, Eye Abnormalities
- Abstract
Optic disc pit maculopathy (ODP-M) is a rare complication of optic disc pit which can cause irreversible visual impairment. The aim of this study is to evaluate the anatomical and functional outcomes and pattern of resolution of ODP-M following vitrectomy with posterior vitreous detachment (PVD) induction and scleral tissue plug for treatment of ODP-M without ILM peeling, laser or use of long term gas/tamponade or head positioning. This retrospective study included 7 patients with ODP-M, meeting the inclusion criteria. Patients were followed up for 6 months. Complete anatomical success was defined as "Total resolution of all the fluid in retinal compartments". All of the patients had complete resolution of the optic pit maculopathy following surgery. The mean duration for complete resolution was 18.3 weeks. Pattern of resolution of ODP-M was found to be resolution of the subretinal fluid (SRF) followed by disappearance of the retinoschitic lesions (RL) and finally disappearance of macular edema (ME). The proposed minimally invasive procedure (MIP) can produce comparably good and equally reliable results for the treatment of ODP-M., (© 2023. Springer Nature Limited.)
- Published
- 2023
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8. Automated lesion segmentation and quantification for prediction of paradoxical worsening in patients with tubercular serpiginous-like choroiditis.
- Author
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Kalra G, Agarwal A, Marchese A, Agrawal R, Bansal R, and Gupta V
- Subjects
- Adult, Female, Fundus Oculi, Humans, Male, Middle Aged, Reproducibility of Results, Retrospective Studies, Algorithms, Choroiditis diagnosis
- Abstract
To develop and evaluate a fully automated pipeline that analyzes color fundus images in patients with tubercular serpiginous-like choroiditis (TB SLC) for prediction of paradoxical worsening (PW). In this retrospective study, patients with TB SLC with a follow-up of 9 months after initiation of anti-tubercular therapy were included. A fully automated custom-designed pipeline was developed which was initially tested using 12 baseline color fundus photographs for assessment of repeatability. After confirming reliability using Bland-Altman plots and intraclass correlation coefficient (ICC), the pipeline was deployed for all patients. The images were preprocessed to exclude the optic nerve from the fundus photo using a single-shot trainable WEKA segmentation algorithm. Two automatic thresholding algorithms were applied, and quantitative metrics were generated. These metrics were compared between PW + and PW- groups using non-parametric tests. A logistic regression model was used to predict probability of PW for assessing binary classification performance and receiver operator curves were generated to choose a sensitivity-optimized threshold. The study included 139 patients (139 eyes; 92 males and 47 females; mean age: 44.8 ± 11.3 years) with TB SLC. Pilot analysis of 12 images showed an excellent ICC for measuring the mean area, intensity, and integrated pixel intensity (all ICC > 0.89). The PW + group had significantly higher mean lesion area (p = 0.0152), mean pixel intensity (p = 0.0181), and integrated pixel intensity (p < 0.0001) compared to the PW- group. Using a sensitivity optimized threshold cut-off for mean pixel intensity, an area under the curve of 0.87 was achieved (sensitivity: 96.80% and specificity: 72.09%). Automated calculation of lesion metrics such as mean pixel intensity and segmented area in TB SLC is a novel approach with good repeatability in predicting PW during the follow-up., (© 2022. The Author(s).)
- Published
- 2022
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9. Three-dimensional modelling of the choroidal angioarchitecture in a multi-ethnic Asian population.
- Author
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Cheong KX, Teo KYC, Tham YC, Sim R, Majithia S, Lee JM, Tan ACS, Cheng CY, Cheung CMG, and Agrawal R
- Subjects
- Face, Fovea Centralis diagnostic imaging, Humans, Tomography, Optical Coherence methods, Choroid diagnostic imaging, Macula Lutea diagnostic imaging
- Abstract
This study aimed to describe the topographic variation of the macula's choroidal angioarchitecture using three-dimensional (3D) choroidal vascularity index (CVI) of healthy eyes from an Asian population and to investigate the associations of CVI. 50 participants were recruited via stratified randomisation based on subfoveal choroidal thickness from the Singapore Epidemiology of Eye Diseases Study. Macular volume scans were acquired using spectral-domain optical coherence tomography with enhanced depth imaging. CVI was assessed based on B-scan binarisation and choroid segmentation. The 3D CVI of the whole, superior, central, and inferior macula were 62.92 ± 1.57%, 62.75 ± 1.93%, 63.35 ± 1.72%, and 62.66 ± 1.70%, respectively, pairwise comparisons P all > 0.05). 3D CVI (Whole Macula) and 2D CVI (Subfoveal) were associated only with each other and not with other ocular and systemic factors. 2D CVI (Subfoveal) had a moderate agreement with 3D CVI (Central Macula) [intraclass corelation coefficient (ICC) = 0.719], and had poorer agreement with 3D CVI of the whole macula, superior, and inferior macula (ICC = 0.591, 0.483, and 0.394, respectively). Scanning volume did not influence 3D CVI measurements. In conclusion, 3D CVI demonstrated no significant topographic variation. CVI was not correlated with demographic or ocular structural features. 2D CVI of the fovea is partially representative of 3D CVI of the macula., (© 2022. The Author(s).)
- Published
- 2022
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10. Semi-automated quantitative analysis of the middle limiting membrane in tubercular serpiginous-like choroiditis using swept-source optical coherence tomography.
- Author
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Agarwal A, Kalra G, Agrawal R, Bansal R, and Gupta V
- Subjects
- Adult, Evaluation Studies as Topic, Female, Humans, Male, Retina physiopathology, Retrospective Studies, Tomography, Optical Coherence methods, Choroid physiopathology, Choroiditis physiopathology, Membranes physiopathology, Tuberculosis, Ocular physiopathology
- Abstract
To analyze the longitudinal changes in the outer plexiform layer (OPL) in patients with tubercular serpiginous-like choroiditis (TB SLC) and compare it to the healthy control population. Clinical and imaging data of subjects with TB SLC (minimum 6-month follow-up) and healthy control subjects were reviewed. Optical coherence tomography (OCT) imaging obtained using swept-source device (DRI Triton, Topcon, Japan) from three visits (baseline, 3 months, and 6 months) were analyzed. Three OCT scans were chosen-one passing through the center of the fovea, one line above, and one line below. After random indexing to anonymize the images, they were pre-processed and fed into an automated pipeline to identify, crop, and measure the area of the OPL in the line scan. Longitudinal comparisons of OPL within the patient group were performed. The study included 32 eyes (16 patients; 11 males; mean age: 32.9 ± 7.8 years) with TB SLC. Twenty-eight eyes (14 subjects; 10 males: mean age: 31.1 ± 6.2 years) of healthy control subjects (age- and gender-matched) were also selected. The area of OPL was significantly different between the baseline and month 6 visit (6288 ± 1803 versus 5487 ± 1461; p = 0.0002) at the central scan passing through the fovea. For the scans above and below the fovea, the reduction in OPL area was significant at each visit (p < 0.0001). In comparison with healthy control subjects, OPL area values in patients with TB SLC were significantly lower at the month-3 (6116 ± 1441 versus 7136 ± 2539; p = 0.04) and the 6-month visit (5487 ± 1461 versus 7136 ± 2539; p < 0.001). The atrophied OPL at month 6 has been referred to as the "middle limiting membrane" (MLM). Subjects with TB SLC may develop progressive atrophy of the OPL resulting in formation of MLM, which is seen as a hyper-reflective line replacing the OPL. The analysis of longitudinal changes in the OPL may be useful in predicting anatomical and functional outcomes in these patients., (© 2021. The Author(s).)
- Published
- 2021
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11. Mixed and nonvaccine high risk HPV types are associated with higher mortality in Black women with cervical cancer.
- Author
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Mendoza RP, Haidary T, Gabutan E, Zhou YY, Bukhari Z, Connelly C, Lee WC, Lee YC, Wadgaonkar R, Agrawal R, Haseeb MA, and Gupta R
- Subjects
- Adult, Aged, Biomarkers, Tumor, Coinfection complications, Coinfection virology, Disease Susceptibility, Female, Genotype, Humans, Immunohistochemistry, Immunophenotyping, Middle Aged, Neoplasm Grading, Neoplasm Staging, Papillomavirus Infections prevention & control, Papillomavirus Infections virology, Papillomavirus Vaccines immunology, Public Health Surveillance, Recurrence, Uterine Cervical Neoplasms epidemiology, Black or African American, Papillomaviridae classification, Papillomaviridae genetics, Papillomavirus Infections complications, Uterine Cervical Neoplasms etiology, Uterine Cervical Neoplasms mortality
- Abstract
We studied the incidence of HPV genotypes in mostly Black women with cervical carcinoma and correlated histopathologic tumor characteristics, immune markers and clinical data with survival. Disease-free survival (DFS) and overall survival (OS) were recorded for 60 months post-diagnosis. Fifty four of the 60 (90%) patients were Black and 36 (60%) were < 55 years of age. Of the 40 patients with typeable HPV genotypes, 10 (25%) had 16/18 HPV genotypes, 30 (75%) had one of the non-16/18 HPV genotypes, and 20 (50%) had one of the 7 genotypes (35, 39, 51, 53, 56, 59 and 68) that are not included in the nonavalent vaccine. Mixed HPV infections (≥ 2 types) were found in 11/40 (27.5%) patients. Patients infected with non-16/18 genotypes, including the most common genotype, HPV 35, had significantly shorter DFS and OS. PD-L1 (p = 0.003), MMR expression (p = 0.01), clinical stage (p = 0.048), histologic grade (p = 0.015) and mixed HPV infection (p = 0.026) were independent predictors of DFS. A remarkably high proportion of cervical cancer cells in our patients expressed PD-L1 which opens the possibility of the use of immune checkpoint inhibitors to treat these cancers. Exclusion of the common HPV genotypes from the vaccine exacerbates mortality from cervical cancer in underserved Black patients.
- Published
- 2021
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12. Normal aging changes in the choroidal angioarchitecture of the macula.
- Author
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Nivison-Smith L, Khandelwal N, Tong J, Mahajan S, Kalloniatis M, and Agrawal R
- Subjects
- Adult, Aged, Choroid pathology, Female, Humans, Macula Lutea pathology, Macular Degeneration pathology, Male, Middle Aged, Neovascularization, Pathologic pathology, Young Adult, Choroid blood supply, Healthy Aging pathology, Macula Lutea blood supply
- Abstract
The choroidal vascularity index (CVI) has been shown to be sensitive in detecting changes in choroidal angioarchitecture in a range of ocular diseases. However, changes in CVI in association with normal physiological aging and spatial distribution remains to be determined. This is significant as a range of ocular conditions with choroidal degeneration are associated with aging. In this study, we assessed CVI for 106 healthy eyes from 106 individuals (range 21-78 years old, ~ 20 individuals/decade) at 15 eccentricities across the macula (0, 230 µm, 460 µm, 690 µm, 1,150 µm, 1,380 µm and 2,760 µm from the fovea in the superior and inferior direction). Total choroidal area, luminal area and stromal area were all significantly decreased with age (p < 0.001 for all parameters). CVI was also significantly decreased with age (p < 0.01) and eccentricity. Fitting of quadratic regression curves to CVI as a function of age yielded a good fit for all eccentricities (r
2 = 0.55-0.80) and suggested a decrease in CVI from the ages of 33-43 years at a rate of 0.7-2.7% per decade. CVI was lower in the inferior versus superior retina at matching eccentricities and a significant difference in age-related decline of CVI with eccentricity only occurred in inferior locations. These findings suggest choroidal angioarchitecture declines from the 4th decade of life with potential eccentricity differences in the inferior and superior retina. Considering the number of age-related diseases with choroidal dysfunction, these results provide foundational knowledge to understand choroidal involvement in these diseases.- Published
- 2020
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13. Vascular Response to Sildenafil Citrate in Aging and Age-Related Macular Degeneration.
- Author
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Yiu G, Vuong VS, Tran S, Migacz J, Cunefare D, Farsiu S, Khandelwal N, Agrawal R, and Cheung CMG
- Subjects
- Aged, Aged, 80 and over, Case-Control Studies, Choroid blood supply, Choroid diagnostic imaging, Choroid drug effects, Choroid pathology, Female, Fluorescein Angiography, Humans, Macula Lutea diagnostic imaging, Macula Lutea metabolism, Macula Lutea pathology, Macular Degeneration etiology, Macular Degeneration metabolism, Male, Phosphodiesterase 5 Inhibitors administration & dosage, Phosphodiesterase 5 Inhibitors adverse effects, Phosphodiesterase 5 Inhibitors therapeutic use, Retinal Vessels diagnostic imaging, Retinal Vessels drug effects, Retinal Vessels metabolism, Retinal Vessels pathology, Sildenafil Citrate administration & dosage, Sildenafil Citrate adverse effects, Tomography, Optical Coherence methods, Vasodilator Agents administration & dosage, Vasodilator Agents adverse effects, Vasodilator Agents therapeutic use, Aging pathology, Macular Degeneration diagnosis, Macular Degeneration drug therapy, Sildenafil Citrate therapeutic use
- Abstract
Age-related macular degeneration (AMD) - the leading cause of vision loss in the elderly - share many risks factors as atherosclerosis, which exhibits loss of vascular compliance resulting from aging and oxidative stress. Here, we attempt to explore choroidal and retinal vascular compliance in patients with AMD by evaluating dynamic vascular changes using live ocular imaging following treatment with oral sildenafil citrate, a phosphodiesterase type 5 (PDE5) inhibitor and potent vasodilator. Enhanced-depth imaging optical coherence tomography (EDI-OCT) and OCT angiography (OCT-A) were performed on 46 eyes of 23 subjects, including 15 patients with non-exudative AMD in one eye and exudative AMD in the fellow eye, and 8 age-matched control subjects. Choroidal thickness, choroidal vascularity, and retinal vessel density were measured across the central macula at 1 and 3 hours after a 100 mg oral dose of sildenafil citrate. Baseline choroidal thickness was 172.1 ± 60.0 μm in non-exudative AMD eyes, 196.4 ± 89.8 μm in exudative AMD eyes, and 207.4 ± 77.7 μm in control eyes, with no difference between the 3 groups (P = 0.116). After sildenafil, choroidal thickness increased by 6.0% to 9.0% at 1 and 3 hours in all groups (P = 0.001-0.014). Eyes from older subjects were associated with choroidal thinning at baseline (P = 0.005) and showed less choroidal expansion at 1 hour and 3 hours after sildenafil (P = 0.001) regardless of AMD status (P = 0.666). The choroidal thickening appeared to be primarily attributed to expansion of the stroma rather than luminal component. Retinal vascular density remained unchanged after sildenafil in all 3 groups (P = 0.281-0.587). Together, our studies suggest that vascular response of the choroid to sildenafil decreases with age, but is not affected by the presence of non-exudative or exudative AMD, providing insight into changes in vessel compliance in aging and AMD.
- Published
- 2019
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14. Audit of stored strain energy and extent of future earthquake rupture in central Himalaya.
- Author
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Sreejith KM, Sunil PS, Agrawal R, Saji AP, Rajawat AS, and Ramesh DS
- Abstract
The deadly 25 April 2015 Gorkha earthquake (M
w = 7.8) and aftershocks have partially released the accumulated interseismic strain along the Main Himalayan Thrust (MHT). Postseismic deformation associated with this earthquake is mainly confined to the north of the rupture. This suggests possible occurrence of future large events towards west or south, where MHT is locked. Asperities arising due to heterogeneity in the stress-strain patterns are believed to play a major role in controlling the coseismic rupture propagation. We determine interseismic coupling along the MHT and spatial variations in total strain rate using two decades of GPS, InSAR and sprit leveling data. Further, b-values derived from the seismicity data are used to identify zones of stress accumulation. We demonstrate that the 2015 earthquake ruptured an asperity which hosted high strain and stress accumulation prior to the event. A similar asperity towards west of the epicenter with unreleased strain energy is identified. This could spawn a future large earthquake akin in magnitude to the 2015 Gorkha event. These findings compel a revisit of the seismic hazard assessment of the central Himalaya.- Published
- 2018
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15. The NLRP3 Inflammasome May Contribute to Pathologic Neovascularization in the Advanced Stages of Diabetic Retinopathy.
- Author
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Chaurasia SS, Lim RR, Parikh BH, Wey YS, Tun BB, Wong TY, Luu CD, Agrawal R, Ghosh A, Mortellaro A, Rackoczy E, Mohan RR, and Barathi VA
- Subjects
- Animals, Cytokines genetics, Cytokines metabolism, Diabetic Retinopathy genetics, Diabetic Retinopathy metabolism, Diabetic Retinopathy pathology, Disease Models, Animal, Electroretinography, Fluorescein Angiography, Glial Fibrillary Acidic Protein genetics, Glial Fibrillary Acidic Protein metabolism, Humans, Mice, Mice, Transgenic, Neovascularization, Pathologic genetics, Neovascularization, Pathologic metabolism, Neovascularization, Pathologic pathology, Retina diagnostic imaging, Retina pathology, Tomography, Optical Coherence, Diabetic Retinopathy diagnostic imaging, Insulin genetics, NLR Family, Pyrin Domain-Containing 3 Protein genetics, NLR Family, Pyrin Domain-Containing 3 Protein metabolism, Neovascularization, Pathologic diagnostic imaging, Vascular Endothelial Growth Factor A genetics
- Abstract
Diabetic retinopathy (DR) is a retinal microvascular disease characterized by inflammatory and angiogenic pathways. In this study, we evaluated NLRP3 inflammasome in a double transgenic mouse model, Akimba (Ins2
Akita xVEGF+/- ), which demonstrates hyperglycemia, vascular hyperpermeability and neovascularization seen in the proliferative DR. Retinal structural integrity, vascular leakage and function were examined by fundus photography, fluorescein angiography, optical coherence tomography, retinal flat mounts, laser speckle flowgraphy (LSFG), and electroretinography in Akimba and its parental strains, Akita (Ins2Akita ) and Kimba (trVEGF029) mice. Inflammatory mechanisms involving NLRP3 inflammasome were investigated using real time-PCR, immunohistochemistry, ELISA and western blots. We observed an increased vascular leakage, reduced retinal thickness, and function in Akimba retina. Also, Akimba retina depicts decreased relative flow volume measured by LSFG. Most importantly, high levels of IL-1β along with increased NLRP3, ASC, and Caspase-1 at mRNA and protein levels were observed in Akimba retina. However, the in vivo functional role remains undefined. In conclusion, increased activation of macroglia (GFAP), microglia (Iba-1 and OX-42) and perivascular macrophages (F4/80 and CD14) together with pro-inflammatory (IL-1β and IL-6) and pro-angiogenic markers (PECAM-1, ICAM-1, VEGF, Flt-1, and Flk-1), suggested a critical role for NLRP3 inflammasome in the Akimba mouse model depicting advanced stages of DR pathogenesis.- Published
- 2018
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16. Characterization of liposomal carriers for the trans-scleral transport of Ranibizumab.
- Author
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Joseph RR, Tan DWN, Ramon MRM, Natarajan JV, Agrawal R, Wong TT, and Venkatraman SS
- Subjects
- Animals, Delayed-Action Preparations, Drug Stability, Intravitreal Injections, Particle Size, Ranibizumab chemistry, Swine, Liposomes chemistry, Ranibizumab administration & dosage, Sclera chemistry
- Abstract
Age-related macular degeneration (AMD) is a leading cause of blindness in the modern world. The standard treatment regimen for neovascular AMD is the monthly/bimonthly intravitreal injection of anti-VEGF agents such as ranibizumab or aflibercept. However, these repeated invasive injections can lead to sight-threatening complications. Sustained delivery by encapsulation of the drug in carriers is a way to reduce the frequency of these injections. Liposomes are biocompatible, non-toxic vesicular nanocarriers, which can be used to encapsulate therapeutic agents to provide sustained release. The protein encapsulation was performed by a modified dehydration-rehydration (DRV) method. The liposomes formed were characterized for size, zeta potential, encapsulation efficiency, stability, in vitro release, and ex vivo release profiles. In addition, the localization of the liposomes themselves was studied ex vivo. Entrapment-efficiency of ranibizumab into 100-nm liposomes varied from 14.7 to 57.0%. Negatively-charged liposomes prepared from DPPC-DPPG were found to have the slowest release with a low initial burst release compared to the rest of liposomal formulations. The ex vivo protein release was found to slower than the in vitro protein release for all samples. In conclusion, the DPPC-DPPG liposomes significantly improved the encapsulation and release profile of ranibizumab.
- Published
- 2017
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17. Persistence of Zika virus in conjunctival fluid of convalescence patients.
- Author
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Tan JJL, Balne PK, Leo YS, Tong L, Ng LFP, and Agrawal R
- Subjects
- Adult, Conjunctiva virology, Disease Outbreaks, Female, Humans, Male, Middle Aged, RNA, Viral analysis, RNA, Viral genetics, Real-Time Polymerase Chain Reaction, Singapore epidemiology, Time Factors, Viral Load, Young Adult, Zika Virus Infection epidemiology, Convalescence, Tears virology, Zika Virus isolation & purification, Zika Virus Infection virology
- Abstract
A widespread epidemic of Zika fever, caused by Zika virus (ZIKAV) has spread throughout the Pacific islands, the Americas and Southeast Asia. The increased incidences of ocular anomalies observed in ZIKAV-infected infants and adults may be associated with the rapid spread of ZIKAV. The objective of this study was to check if ZIKAV could be detected in human tears after the first week of infection. Twenty-nine patients with PCR confirmed ZIKAV infection during the Singapore August 2016 ZIKAV outbreak were enrolled for the study. Detection and quantification of ZIKAV RNA was performed on conjunctival swabs collected from both eyes of these patients at the late convalescent phase (30 days post-illness). Efficiency of viral isolation from swab samples was confirmed by the limit of detection (as low as 0.1 PFU/µL, equivalent to copy number of 4.9) in spiked swabs with different concentrations of ZIKAV (PFU/µL). Samples from three patients were found positive by qRT-PCR for ZIKAV and the viral RNA copy numbers detected in conjunctival swabs ranged from 5.2 to 9.3 copies respectively. ZIKAV could persist in the tears of infected patients for up to 30 days post-illness, and may therefore possess a potential public health risk of transmission.
- Published
- 2017
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18. Choroidal Remodeling in Age-related Macular Degeneration and Polypoidal Choroidal Vasculopathy: A 12-month Prospective Study.
- Author
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Ting DSW, Yanagi Y, Agrawal R, Teo HY, Seen S, Yeo IYS, Mathur R, Chan CM, Lee SY, Wong EYM, Wong D, Wong TY, and Cheung GCM
- Subjects
- Aged, Aged, 80 and over, Choroid diagnostic imaging, Choroidal Neovascularization diagnostic imaging, Female, Humans, Macular Degeneration diagnostic imaging, Male, Middle Aged, Polyps diagnostic imaging, Prospective Studies, Time Factors, Tomography, Optical Coherence methods, Visual Acuity, Choroid pathology, Choroidal Neovascularization pathology, Macular Degeneration pathology, Polyps pathology
- Abstract
Choroid thinning occurs in age-related macular degeneration (AMD). However, it remains unclear whether the reduction is due to reduction in choroidal vessels or shrinkage of choroidal stroma, or both. The purpose of this study was to evaluate the changes of the choroidal vascular and stromal area in 118 patients with typical AMD (t-AMD) and polypoidal choroidal vasculopathy (PCV) over a 12-month period. We used spectral-domain optical coherence tomography (SD-OCT) with enhanced depth imaging (EDI) mode to measure the subfoveal choroidal thickness (CT), central retinal thickness (CRT) and choroidal vascularity index (CVI - ratio of luminal area to total choroidal area). At baseline, PCV eyes had higher CRT (471.6 µm vs 439.1 µm, p = 0.02), but comparable subfoveal CT and CVI, compared to t-AMD. Eyes with high CVI at baseline showed marked reduction in stromal area compared with eyes with average or low CVI. Over 12 months, CRT and subfoveal CT significantly decreased (p < 0.001) in both subtypes. Eyes with high baseline CVI showed significant CVI reduction from baseline to month 12 (p < 0.001), whereas eyes with average to low baseline CVI showed increase in CVI. These differences in choroidal vascularity may reflect different predominant pathogenic processes and remodeling in AMD eyes with varying spectrum.
- Published
- 2017
- Full Text
- View/download PDF
19. Directing solar photons to sustainably meet food, energy, and water needs.
- Author
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Gençer E, Miskin C, Sun X, Khan MR, Bermel P, Alam MA, and Agrawal R
- Abstract
As we approach a "Full Earth" of over ten billion people within the next century, unprecedented demands will be placed on food, energy and water (FEW) supplies. The grand challenge before us is to sustainably meet humanity's FEW needs using scarcer resources. To overcome this challenge, we propose the utilization of the entire solar spectrum by redirecting solar photons to maximize FEW production from a given land area. We present novel solar spectrum unbundling FEW systems (SUFEWS), which can meet FEW needs locally while reducing the overall environmental impact of meeting these needs. The ability to meet FEW needs locally is critical, as significant population growth is expected in less-developed areas of the world. The proposed system presents a solution to harness the same amount of solar products (crops, electricity, and purified water) that could otherwise require ~60% more land if SUFEWS were not used-a major step for Full Earth preparedness.
- Published
- 2017
- Full Text
- View/download PDF
20. Oxidative Unzipping and Transformation of High Aspect Ratio Boron Nitride Nanotubes into "White Graphene Oxide" Platelets.
- Author
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Nautiyal P, Loganathan A, Agrawal R, Boesl B, Wang C, and Agarwal A
- Abstract
Morphological and chemical transformations in boron nitride nanotubes under high temperature atmospheric conditions is probed in this study. We report atmospheric oxygen induced cleavage of boron nitride nanotubes at temperatures exceeding 750 °C for the first time. Unzipping is then followed by coalescence of these densely clustered multiple uncurled ribbons to form stacks of 2D sheets. FTIR and EDS analysis suggest these 2D platelets to be Boron Nitride Oxide platelets, with analogous structure to Graphene Oxide, and therefore we term them as "White Graphene Oxide" (WGO). However, not all BNNTs deteriorate even at temperatures as high as 1000 °C. This leads to the formation of a hybrid nanomaterial system comprising of 1D BN nanotubes and 2D BN oxide platelets, potentially having advanced high temperature sensing, radiation shielding, mechanical strengthening, electron emission and thermal management applications due to synergistic improvement of multi-plane transport and mechanical properties. This is the first report on transformation of BNNT bundles to a continuous array of White Graphene Oxide nanoplatelet stacks.
- Published
- 2016
- Full Text
- View/download PDF
21. Assessment of red blood cell deformability in type 2 diabetes mellitus and diabetic retinopathy by dual optical tweezers stretching technique.
- Author
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Agrawal R, Smart T, Nobre-Cardoso J, Richards C, Bhatnagar R, Tufail A, Shima D, H Jones P, and Pavesio C
- Subjects
- Cell Shape physiology, Cross-Sectional Studies, Erythrocytes cytology, Female, Hematology instrumentation, Hematology methods, Humans, Male, Microscopy, Video, Middle Aged, Pilot Projects, Regression Analysis, Diabetes Mellitus, Type 2 physiopathology, Diabetic Retinopathy physiopathology, Erythrocyte Deformability physiology, Optical Tweezers
- Abstract
A pilot cross sectional study was conducted to investigate the role of red blood cells (RBC) deformability in type 2 diabetes mellitus (T2DM) without and with diabetic retinopathy (DR) using a dual optical tweezers stretching technique. A dual optical tweezers was made by splitting and recombining a single Nd:YAG laser beam. RBCs were trapped directly (i.e., without microbead handles) in the dual optical tweezers where they were observed to adopt a "side-on" orientation. RBC initial and final lengths after stretching were measured by digital video microscopy, and a Deformability index (DI) calculated. Blood from 8 healthy controls, 5 T2DM and 7 DR patients with respective mean age of 52.4 yrs, 51.6 yrs and 52 yrs was analysed. Initial average length of RBCs for control group was 8.45 ± 0.25 μm, 8.68 ± 0.49 μm for DM RBCs and 8.82 ± 0.32 μm for DR RBCs (p < 0.001). The DI for control group was 0.0698 ± 0.0224, and that for DM RBCs was 0.0645 ± 0.03 and 0.0635 ± 0.028 (p < 0.001) for DR group. DI was inversely related to basal length of RBCs (p = .02). DI of RBC from DM and DR patients was significantly lower in comparison with normal healthy controls. A dual optical tweezers method can hence be reliably used to assess RBC deformability.
- Published
- 2016
- Full Text
- View/download PDF
22. Choroidal vascularity index as a measure of vascular status of the choroid: Measurements in healthy eyes from a population-based study.
- Author
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Agrawal R, Gupta P, Tan KA, Cheung CM, Wong TY, and Cheng CY
- Subjects
- Aged, Aged, 80 and over, Choroid Diseases diagnosis, Choroid Diseases pathology, Female, Humans, Male, Middle Aged, Aging, Choroid blood supply
- Abstract
The vascularity of the choroid has been implicated in the pathogenesis of various eye diseases. To date, no established quantifiable parameters to estimate vascular status of the choroid exists. Choroidal vascularity index (CVI) may potentially be used to assess vascular status of the choroid. We aimed to establish normative database for CVI and identify factors associated with CVI in healthy eyes. In this population-based study on 345 healthy eyes, choroidal enhanced depth imaging optical coherence tomography scans were segmented by modified image binarization technique. Total subfoveal choroidal area (TCA) was segmented into luminal (LA) and stromal (SA) area. CVI was calculated as the proportion of LA to TCA. Linear regression was used to identify ocular and systemic factors associated with CVI and subfoveal choroidal thickness (SFCT). Subfoveal CVI ranged from 60.07 to 71.27% with a mean value of 65.61 ± 2.33%. CVI was less variable than SFCT (coefficient of variation for CVI was 3.55 vs 40.30 for SFCT). Higher CVI was associated with thicker SFCT, but not associated with most physiological variables. CVI was elucidated as a significant determinant of SFCT. While SFCT was affected by many factors, CVI remained unaffected suggesting CVI to be a more robust marker of choroidal diseases.
- Published
- 2016
- Full Text
- View/download PDF
23. A prospective case-control study to investigate retinal microvascular changes in acute dengue infection.
- Author
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Tan P, Lye DC, Yeo TK, Cheung CY, Thein TL, Wong JG, Agrawal R, Li LJ, Wong TY, Gan VC, Leo YS, and Teoh SC
- Subjects
- Acute Disease, Adult, Aspartate Aminotransferases metabolism, Case-Control Studies, Creatinine blood, Dengue diagnosis, Female, Hematocrit, Hemoglobins analysis, Humans, Male, Microcirculation, Prospective Studies, Dengue physiopathology, Microvessels physiopathology, Retina physiopathology
- Abstract
Dengue infection can affect the microcirculation by direct viral infection or activation of inflammation. We aimed to determine whether measured retinal vascular parameters were associated with acute dengue infection. Patients with acute dengue were recruited from Communicable Diseases Center, Singapore and age-gender-ethnicity matched healthy controls were selected from a population-based study. Retinal photographs were taken on recruitment and convalescence. A spectrum of quantitative retinal microvascular parameters (retinal vascular caliber, fractal dimension, tortuosity and branching angle) was measured using a semi-automated computer-based program. (Singapore I Vessel Assessment, version 3.0). We included 62 dengue patients and 127 controls. Dengue cases were more likely to have wider retinal arteriolar and venular calibers (158.3 μm vs 144.3 μm, p < 0.001; 227.7 μm vs 212.8 μm, p < 0.001; respectively), higher arteriolar and venular fractal dimensions (1.271 vs 1.249, p = 0.002; 1.268 vs. 1.230, p < 0.001, respectively), higher arteriolar and venular tortuosity (0.730 vs 0.546 [x10(4)], p < 0.001; 0.849 vs 0.658 [x10(4)], p < 0.001; respectively), compared to controls. Resolution of acute dengue coincided with decrease in retinal vascular calibers and venular fractal dimension. Dengue patients have altered microvascular network in the retina; these changes may reflect pathophysiological processes in the immune system.
- Published
- 2015
- Full Text
- View/download PDF
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