140 results on '"Ali, R"'
Search Results
2. Application of physiological network mapping in the prediction of survival in critically ill patients with acute liver failure
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Oyelade, Tope, Moore, Kevin P., and Mani, Ali R.
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- 2024
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3. Comparison between a deep-learning and a pixel-based approach for the automated quantification of HIV target cells in foreskin tissue
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Shao, Zhongtian, Buchanan, Lane B., Zuanazzi, David, Khan, Yazan N., Khan, Ali R., and Prodger, Jessica L.
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- 2024
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4. From the diagnosis of infectious keratitis to discriminating fungal subtypes; a deep learning-based study
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Soleimani, Mohammad, Esmaili, Kosar, Rahdar, Amir, Aminizadeh, Mehdi, Cheraqpour, Kasra, Tabatabaei, Seyed Ali, Mirshahi, Reza, Bibak, Zahra, Mohammadi, Seyed Farzad, Koganti, Raghuram, Yousefi, Siamak, and Djalilian, Ali R.
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- 2023
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5. How to transform urban institutional green spaces into Ancillary Botanic Gardens to expand informal botanical learning opportunities in cities
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Melhem, M., Forrest, A., Abunnasr, Y., Abi Ali, R., and Talhouk, S. N.
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- 2023
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6. Blockchain enabled data security in vehicular networks
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Sehar, Naseem us, Khalid, Osman, Khan, Imran Ali, Rehman, Faisal, Fayyaz, Muhammad A. B., Ansari, Ali R., and Nawaz, Raheel
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- 2023
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7. The effect of decellularization protocols on characterizations of thermoresponsive and light-curable corneal extracellular matrix hydrogels
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Yazdanpanah, Ghasem, Jalilian, Elmira, Shen, Xiang, Anwar, Khandaker N., Jiang, Yizhou, Jabbehdari, Sayena, Rosenblatt, Mark I., Pan, Yayue, and Djalilian, Ali R.
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- 2023
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8. Simultaneous multi-crop land suitability prediction from remote sensing data using semi-supervised learning
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Bhullar, Amanjot, Nadeem, Khurram, and Ali, R. Ayesha
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- 2023
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9. Estimate earth fissure hazard based on machine learning in the Qa’ Jahran Basin, Yemen
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Al-Masnay, Yousef A., Al-Areeq, Nabil M., Ullah, Kashif, Al-Aizari, Ali R., Rahman, Mahfuzur, Wang, Changcheng, Zhang, Jiquan, and Liu, Xingpeng
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- 2022
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10. A comprehensive atlas of Aggrecan, Versican, Neurocan and Phosphacan expression across time in wildtype retina and in retinal degeneration
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Matsuyama, A., Kalargyrou, A. A., Smith, A. J., Ali, R. R., and Pearson, R. A.
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- 2022
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11. Direct evidence for low-energy electron emission following O LVV Auger transitions at oxide surfaces
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Fairchild, Alexander J., Chirayath, Varghese A., Sterne, Philip A., Gladen, Randall W., Koymen, Ali R., and Weiss, Alex H.
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- 2020
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12. Behavioral effects of SGK1 knockout in VTA and dopamine neurons
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Doyle, Marie A., Stark, Ali R., Fejes-Tóth, Geza, Náray-Fejes-Tóth, Aniko, and Mazei-Robison, Michelle S.
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- 2020
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13. The effect of decellularization protocols on characterizations of thermoresponsive and light-curable corneal extracellular matrix hydrogels
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Ghasem Yazdanpanah, Elmira Jalilian, Xiang Shen, Khandaker N. Anwar, Yizhou Jiang, Sayena Jabbehdari, Mark I. Rosenblatt, Yayue Pan, and Ali R. Djalilian
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Multidisciplinary - Abstract
To compare the effects of two decellularization protocols on the characteristics of fabricated COrnea Matrix (COMatrix) hydrogels. Porcine corneas were decellularized with Detergent (De) or Freeze–Thaw (FT)-based protocols. DNA remnant, tissue composition and α-Gal epitope content were measured. The effect of α-galactosidase on α-Gal epitope residue was assessed. Thermoresponsive and light-curable (LC) hydrogels were fabricated from decellularized corneas and characterized with turbidimetric, light-transmission and rheological experiments. The cytocompatibility and cell-mediated contraction of the fabricated COMatrices were assessed. Both protocols reduced the DNA content to 0.5 µg/mg), and preserved the collagens and glycosaminoglycans. The α-Gal epitope remnant decreased by > 50% following both decellularization methods. We observed more than 90% attenuation in α-Gal epitope after treatment with α-galactosidase. The thermogelation half-time of thermoresponsive COMatrices derived from De-Based protocol (De-COMatrix) was 18 min, similar to that of FT-COMatrix (21 min). The rheological characterizations revealed significantly higher shear moduli of thermoresponsive FT-COMatrix (300.8 ± 22.5 Pa) versus De-COMatrix 178.7 ± 31.3 Pa, p p p
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- 2023
14. Blockchain enabled data security in vehicular networks
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Naseem us Sehar, Osman Khalid, Imran Ali Khan, Faisal Rehman, Muhammad A. B. Fayyaz, Ali R. Ansari, and Raheel Nawaz
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Multidisciplinary - Abstract
Recently, researchers have applied blockchain technology in vehicular networks to take benefit of its security features, such as confidentiality, authenticity, immutability, integrity, and non-repudiation. The resource-intensive nature of the blockchain consensus algorithm makes it a challenge to integrate it with vehicular networks due to the time-sensitive message dissemination requirements. Moreover, most of the researchers have used the Proof-of-Work consensus algorithm, or its variant to add a block to a blockchain, which is a highly resource-intensive process with greater latency. In this paper, we propose a consensus algorithm for vehicular networks named as Vehicular network Based Consensus Algorithm (VBCA) to ensure data security across the network using blockchain that maintains a secured pool of confirmed messages exchanged in the network. The proposed scheme, based on a consortium blockchain, reduces average transaction latency, and increases the number of confirmed transactions in a decentralized manner, without compromising the integrity and security of data. The simulation results show improved performance in terms of confirmed transactions, transaction latency, number of blocks, and block creation time.
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- 2023
15. Conceptualisation, Development, Fabrication and In Vivo Validation of a Novel Disintegration Tester for Orally Disintegrating Tablets
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Koner, Jasdip S., Rajabi-Siahboomi, Ali R., Missaghi, Shahrzad, Kirby, Daniel, Perrie, Yvonne, Ahmed, Jiteen, and Mohammed, Afzal R.
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- 2019
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16. Solid state phase transformation kinetics in Zr-base alloys
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Lars O. Jernkvist and Ali R Massih
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Cladding (metalworking) ,Materials science ,Hydrogen ,Base (chemistry) ,Science ,FOS: Physical sciences ,Thermodynamics ,chemistry.chemical_element ,02 engineering and technology ,01 natural sciences ,Article ,Phase (matter) ,0103 physical sciences ,010302 applied physics ,chemistry.chemical_classification ,Theory and computation ,Condensed Matter - Materials Science ,Multidisciplinary ,Zirconium alloy ,Materials Science (cond-mat.mtrl-sci) ,021001 nanoscience & nanotechnology ,Structural materials ,Transformation (function) ,chemistry ,Beta (plasma physics) ,Medicine ,0210 nano-technology ,Constant (mathematics) - Abstract
We present a kinetic model for solid state phase transformation (alphabeta) of common zirconium alloys used as fuel cladding material in light water reactors. The model computes the relative amounts of beta or alpha phase fraction as a function of time or temperature in the alloys. The model accounts for the influence of excess oxygen (due to oxidation) and hydrogen concentration (due to hydrogen pickup) on phase transformation kinetics. Two variants of the model denoted by A and B are presented. Model A is suitable for simulation of laboratory experiments in which the heating/cooling rate is constant and is prescribed. Model B is more generic. We compare the results of our model computations, for both A and B variants, with accessible experimental data reported in the literature covering heating/cooling rates of up to 100 K/s. The results of our comparison are satisfactory, especially for model A. Our model B is intended for implementation in fuel rod behavior computer programs, applicable to a reactor accident situation, in which the Zr-based fuel cladding may go through alphabeta phase transformation., Comment: 19 pages, 15 figures
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- 2021
17. Estimate earth fissure hazard based on machine learning in the Qa' Jahran Basin, Yemen
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Yousef A. Al-Masnay, Nabil M. Al-Areeq, Kashif Ullah, Ali R. Al-Aizari, Mahfuzur Rahman, Changcheng Wang, Jiquan Zhang, and Xingpeng Liu
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Multidisciplinary - Abstract
Earth fissures are potential hazards that often cause severe damage and affect infrastructure, the environment, and socio-economic development. Owing to the complexity of the causes of earth fissures, the prediction of earth fissures remains a challenging task. In this study, we assess earth fissure hazard susceptibility mapping through four advanced machine learning algorithms, namely random forest (RF), extreme gradient boosting (XGBoost), Naïve Bayes (NB), and K-nearest neighbor (KNN). Using Qa’ Jahran Basin in Yemen as a case study area, 152 fissure locations were recorded via a field survey for the creation of an earth fissure inventory and 11 earth fissure conditioning factors, comprising of topographical, hydrological, geological, and environmental factors, were obtained from various data sources. The outputs of the models were compared and analyzed using statistical indices such as the confusion matrix, overall accuracy, and area under the receiver operating characteristics (AUROC) curve. The obtained results revealed that the RF algorithm, with an overall accuracy of 95.65% and AUROC, 0.99 showed excellent performance for generating hazard maps, followed by XGBoost, with an overall accuracy of 92.39% and AUROC of 0.98, the NB model, with overall accuracy, 88.43% and AUROC, 0.96, and KNN model with general accuracy, 80.43% and AUROC, 0.88), respectively. Such findings can assist land management planners, local authorities, and decision-makers in managing the present and future earth fissures to protect society and the ecosystem and implement suitable protection measures.
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- 2022
18. Behavioral effects of SGK1 knockout in VTA and dopamine neurons
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Anikó Náray-Fejes-Tóth, Marie A. Doyle, Michelle S. Mazei-Robison, Géza Fejes-Tóth, and Ali R. Stark
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Male ,0301 basic medicine ,Genetically modified mouse ,Central nervous system ,lcsh:Medicine ,Protein Serine-Threonine Kinases ,Biology ,Article ,Immediate-Early Proteins ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Mediator ,Cocaine ,Dopamine Uptake Inhibitors ,Reward ,Dopamine ,medicine ,Animals ,lcsh:Science ,Mice, Knockout ,Gene knockdown ,Multidisciplinary ,Behavior, Animal ,urogenital system ,Dopaminergic Neurons ,Ventral Tegmental Area ,lcsh:R ,Mice, Inbred C57BL ,Ventral tegmental area ,030104 developmental biology ,medicine.anatomical_structure ,nervous system ,SGK1 ,Female ,lcsh:Q ,Signal transduction ,Neuroscience ,030217 neurology & neurosurgery ,psychological phenomena and processes ,Signal Transduction ,medicine.drug - Abstract
Drugs of abuse cause significant neuroadaptations within the ventral tegmental area (VTA), with alterations in gene expression tied to changes in reward behavior. Serum- and glucocorticoid-inducible kinase 1 (SGK1) transcription, catalytic activity, and phosphorylation are upregulated in the VTA by chronic cocaine or morphine treatment, positioning SGK1 as a critical mediator of reward behavior. Using transgenic mouse models, we investigated the effect of SGK1 knockout in the VTA and in dopamine (DA) neurons to evaluate the necessity of protein expression for natural and drug reward behaviors. SGK1 knockdown in the VTA did not impact reward behaviors. Given VTA cellular heterogeneity, we also investigated a DA neuron-specific SGK1 knockout (KO). DA SGK1 KO significantly decreased body weight of adult mice as well as increased general locomotor activity; however, reward behaviors were similarly unaltered. Given that SGK1 mutants virally overexpressed in the VTA are capable of altering drug-associated behavior, our current results suggest that changes in SGK1 protein signaling may be distinct from expression. This work yields novel information on the impact of SGK1 deletion, critical for understanding the role of SGK1 signaling in the central nervous system and evaluating SGK1 as a potential therapeutic target for treatment of substance use disorders.
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- 2020
19. Callosobruchus embryo struggle to guarantee progeny production
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Amiri, Azam, primary and Bandani, Ali R., additional
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- 2020
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20. Conceptualisation, Development, Fabrication and In Vivo Validation of a Novel Disintegration Tester for Orally Disintegrating Tablets
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Jiteen Ahmed, Afzal R. Mohammed, Jasdip Koner, Ali R. Rajabi-Siahboomi, Shahrzad Missaghi, Daniel Kirby, and Yvonne Perrie
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0301 basic medicine ,Orally disintegrating tablet ,Adult ,Male ,RM ,lcsh:Medicine ,Administration, Oral ,Oral cavity ,Characterization and analytical techniques ,Dosage form ,Article ,03 medical and health sciences ,0302 clinical medicine ,IVIVC ,Time windows ,In vivo ,Humans ,Immediate release ,lcsh:Science ,Mathematics ,Mouth ,Multidisciplinary ,lcsh:R ,Test method ,030104 developmental biology ,Solubility ,Mastication ,lcsh:Q ,Female ,Biomedical engineering ,030217 neurology & neurosurgery ,Tablets - Abstract
Disintegration time is the key critical quality attribute for a tablet classed as an Orally Disintegrating Tablet (ODT). The currently accepted in vitro testing regimen for ODTs is the standard United States Pharmacopeia (USP) test for disintegration of immediate release tablets, which requires a large volume along with repeated submergence of the dosage form within the disintegration medium. The aim of this study was to develop an in vivo relevant ODT disintegration test that mimicked the environment of the oral cavity, including lower volume of disintegration medium, with relevant temperature and humidity that represent the conditions of the mouth. The results showed that the newly developed Aston test was able to differentiate between different ODTs with small disintegration time windows, as well as between immediate release tablets and ODTs. The Aston test provided higher correlations between ODT properties and disintegration time compared to the USP test method and most significantly, resulted in a linear in vitro/in vivo correlation (IVIVC) (R2 value of 0.98) compared with a “hockey stick” profile of the USP test. This study therefore concluded that the newly developed Aston test is an accurate, repeatable, relevant and robust test method for assessing ODT disintegration time which will provide the pharmaceutical industry and regulatory authorities across the world with a pragmatic ODT testing regime.
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- 2019
21. Ectopic expression of S28A-mutated Histone H3 modulates longevity, stress resistance and cardiac function in Drosophila
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Stanley Nattel, Kristina Lorenz, Johannes Backs, Michael Kramer, Ali R. Saadatmand, Silvio Weber, Edmund Koch, Christian Schnabel, Julius P. Joos, Gerd Heusch, Pavel Tomancak, Ivana Viktorinová, Petra Kleinbongard, Ali El-Armouche, Dobromir Dobrev, and Theresa Brand
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0301 basic medicine ,Transcription, Genetic ,Longevity ,Medizin ,lcsh:Medicine ,medicine.disease_cause ,Article ,Ectopic Gene Expression ,Histones ,03 medical and health sciences ,Histone H3 ,Stress, Physiological ,medicine ,Animals ,Phosphorylation ,lcsh:Science ,Mitosis ,Alleles ,Regulation of gene expression ,Multidisciplinary ,biology ,Chemistry ,lcsh:R ,Heart ,Cell biology ,030104 developmental biology ,Drosophila melanogaster ,Mitochondrial biogenesis ,Mutation ,biology.protein ,lcsh:Q ,Ectopic expression ,PRC2 ,Oxidative stress - Abstract
Histone H3 serine 28 (H3S28) phosphorylation and de-repression of polycomb repressive complex (PRC)-mediated gene regulation is linked to stress conditions in mitotic and post-mitotic cells. To better understand the role of H3S28 phosphorylation in vivo, we studied a Drosophila strain with ectopic expression of constitutively-activated H3S28A, which prevents PRC2 binding at H3S28, thus mimicking H3S28 phosphorylation. H3S28A mutants showed prolonged life span and improved resistance against starvation and paraquat-induced oxidative stress. Morphological and functional analysis of heart tubes revealed smaller luminal areas and thicker walls accompanied by moderately improved cardiac function after acute stress induction. Whole-exome deep gene-sequencing from isolated heart tubes revealed phenotype-corresponding changes in longevity-promoting and myotropic genes. We also found changes in genes controlling mitochondrial biogenesis and respiration. Analysis of mitochondrial respiration from whole flies revealed improved efficacy of ATP production with reduced electron transport-chain activity. Finally, we analyzed posttranslational modification of H3S28 in an experimental heart failure model and observed increased H3S28 phosphorylation levels in HF hearts. Our data establish a critical role of H3S28 phosphorylation in vivo for life span, stress resistance, cardiac and mitochondrial function in Drosophila. These findings may pave the way for H3S28 phosphorylation as a putative target to treat stress-related disorders such as heart failure.
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- 2017
22. Neuroprosthetic-enabled control of graded arm muscle contraction in a paralyzed human
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Nicholas V. Annetta, Marcia A. Bockbrader, Mingming Zhang, David A. Friedenberg, Herbert S. Bresler, Michael A. Schwemmer, W. Jerry Mysiw, Ali R. Rezai, Andrew J. Landgraf, Gaurav Sharma, and Chad E. Bouton
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Adult ,Male ,Volition ,0301 basic medicine ,medicine.medical_specialty ,Neuroprosthetics ,Computer science ,Movement ,Science ,Quadriplegia ,Article ,03 medical and health sciences ,0302 clinical medicine ,Physical medicine and rehabilitation ,Arm muscle ,medicine ,Humans ,Functional electrical stimulation ,Tetraplegia ,Brain–computer interface ,Multidisciplinary ,Prostheses and Implants ,medicine.disease ,Electric Stimulation ,030104 developmental biology ,Brain-Computer Interfaces ,Arm ,Medicine ,medicine.symptom ,030217 neurology & neurosurgery ,Muscle Contraction ,Muscle contraction - Abstract
Neuroprosthetics that combine a brain computer interface (BCI) with functional electrical stimulation (FES) can restore voluntary control of a patients’ own paralyzed limbs. To date, human studies have demonstrated an “all-or-none” type of control for a fixed number of pre-determined states, like hand-open and hand-closed. To be practical for everyday use, a BCI-FES system should enable smooth control of limb movements through a continuum of states and generate situationally appropriate, graded muscle contractions. Crucially, this functionality will allow users of BCI-FES neuroprosthetics to manipulate objects of different sizes and weights without dropping or crushing them. In this study, we present the first evidence that using a BCI-FES system, a human with tetraplegia can regain volitional, graded control of muscle contraction in his paralyzed limb. In addition, we show the critical ability of the system to generalize beyond training states and accurately generate wrist flexion states that are intermediate to training levels. These innovations provide the groundwork for enabling enhanced and more natural fine motor control of paralyzed limbs by BCI-FES neuroprosthetics.
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- 2017
23. Rapamycin Prolongs the Survival of Corneal Epithelial Cells in Culture
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Medi Eslani, Hossein M. Sagha, Ilham Putra, Michael J. Huvard, Ali R. Djalilian, Behrad Y. Milani, Sanaz Gidfar, Xiang Shen, and Farnoud Y. Milani
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Adult ,0301 basic medicine ,Keratin 14 ,Adolescent ,Cell Survival ,Cellular differentiation ,Apoptosis ,Limbus Corneae ,Article ,Flow cytometry ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Western blot ,medicine ,Humans ,Progenitor cell ,Cells, Cultured ,Cellular Senescence ,Aged ,Cell Proliferation ,Aged, 80 and over ,Inflammation ,Sirolimus ,Multidisciplinary ,medicine.diagnostic_test ,Chemistry ,Cell growth ,Cell Cycle ,Epithelium, Corneal ,Cell Differentiation ,Epithelial Cells ,Middle Aged ,Cell cycle ,Molecular biology ,030104 developmental biology ,030221 ophthalmology & optometry ,Biomarkers - Abstract
Rapamycin has previously been shown to have anti-aging effects in cells and organisms. These studies were undertaken to investigate the effects of rapamycin on primary human corneal epithelial cells in vitro. Cell growth and viability were evaluated by bright field microscopy. Cell proliferation and cycle were evaluated by flow cytometry. The expression of differentiation markers was evaluated by quantitative PCR and Western blot. Senescence was evaluated by senescence-associated β-Galactosidase staining and by Western blot analysis of p16. Apoptosis was evaluated by a TUNEL assay. The results demonstrated that primary HCEC treated with rapamycin had lower proliferation but considerably longer survival in vitro. Rapamycin-treated cells maintained a higher capacity to proliferate after removal of rapamycin and expressed more keratin 14, N-Cadherin, DeltaNp63 and ABCG2, and less keratin 12, consistent with their less differentiated state. Rapamycin treated cells demonstrated less senescence by X-β-Gal SA staining and by lower expression of p16. Apoptosis was also lower in the rapamycin treated cells. These results indicate that rapamycin treatment of HCEC prevents the loss of corneal epithelial stem/progenitor cells to replicative senescence and apoptosis. Rapamycin may be a useful additive for ex vivo expansion of corneal epithelial cells.
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- 2017
24. Using an Artificial Neural Bypass to Restore Cortical Control of Rhythmic Movements in a Human with Quadriplegia
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Chad E. Bouton, W. Jerry Mysiw, Stephanie Domas, David A. Friedenberg, Connor Majstorovic, Bradley C. Glenn, Nicholas V. Annetta, Marcie Bockbrader, Ali R. Rezai, and Gaurav Sharma
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0301 basic medicine ,Multidisciplinary ,Artificial neural network ,Computer science ,Central pattern generator ,Anatomy ,Spinal cord ,Article ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Rhythm ,Cortical control ,Paralysis ,medicine ,medicine.symptom ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Neuroprosthetic technology has been used to restore cortical control of discrete (non-rhythmic) hand movements in a paralyzed person. However, cortical control of rhythmic movements which originate in the brain but are coordinated by Central Pattern Generator (CPG) neural networks in the spinal cord has not been demonstrated previously. Here we show a demonstration of an artificial neural bypass technology that decodes cortical activity and emulates spinal cord CPG function allowing volitional rhythmic hand movement. The technology uses a combination of signals recorded from the brain, machine-learning algorithms to decode the signals, a numerical model of CPG network, and a neuromuscular electrical stimulation system to evoke rhythmic movements. Using the neural bypass, a quadriplegic participant was able to initiate, sustain, and switch between rhythmic and discrete finger movements, using his thoughts alone. These results have implications in advancing neuroprosthetic technology to restore complex movements in people living with paralysis.
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- 2016
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25. Therapeutic targeting using tumor specific peptides inhibits long non-coding RNA HOTAIR activity in ovarian and breast cancer
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Yinu Wang, Ali R. Özeş, Kenneth P. Nephew, Jay Pilrose, Fang Fang, and Xingyue Zong
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0301 basic medicine ,Peptide Nucleic Acids ,Science ,Mice, Nude ,Antineoplastic Agents ,Breast Neoplasms ,Biology ,Article ,03 medical and health sciences ,Ovarian tumor ,Mice ,Cell Line, Tumor ,medicine ,Animals ,Humans ,Enhancer of Zeste Homolog 2 Protein ,Ovarian Neoplasms ,Tumor microenvironment ,Mice, Inbred BALB C ,Multidisciplinary ,EZH2 ,NF-kappa B ,RNA ,Cancer ,HOTAIR ,Drug Synergism ,medicine.disease ,Long non-coding RNA ,3. Good health ,030104 developmental biology ,Cancer research ,Medicine ,Female ,RNA, Long Noncoding ,Cisplatin ,HOX Transcript Antisense RNA - Abstract
Long non-coding RNAs (lncRNAs) play key roles in human diseases, including cancer. Functional studies of the lncRNA HOTAIR (HOX transcript antisense RNA) provide compelling evidence for therapeutic targeting of HOTAIR in cancer, but targeting lncRNAs in vivo has proven to be difficult. In the current study, we describe a peptide nucleic acids (PNA)-based approach to block the ability of HOTAIR to interact with EZH2 and subsequently inhibit HOTAIR-EZH2 activity and resensitize resistant ovarian tumors to platinum. Treatment of HOTAIR-overexpressing ovarian and breast cancer cell lines with PNAs decreased invasion and increased chemotherapy sensitivity. Furthermore, the mechanism of action correlated with reduced nuclear factor-kappaB (NF-κB) activation and decreased expression of NF-κB target genes matrix metalloprotease 9 and interleukin 6. To deliver the anti-lncRNA to the acidic (pH approximately 6) tumor microenvironment, PNAs were conjugated to pH-low insertion peptide (pHLIP). Treatment of mice harboring platinum-resistant ovarian tumor xenografts with pHLIP-PNA constructs suppressed HOTAIR activity, reduced tumor formation and improved survival. This first report on pHLIP-PNA lncRNA targeting solid tumors in vivo suggests a novel cancer therapeutic approach.
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- 2016
26. Neuroprosthetic-enabled control of graded arm muscle contraction in a paralyzed human
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Friedenberg, David A., primary, Schwemmer, Michael A., additional, Landgraf, Andrew J., additional, Annetta, Nicholas V., additional, Bockbrader, Marcia A., additional, Bouton, Chad E., additional, Zhang, Mingming, additional, Rezai, Ali R., additional, Mysiw, W. Jerry, additional, Bresler, Herbert S., additional, and Sharma, Gaurav, additional
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- 2017
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27. Therapeutic targeting using tumor specific peptides inhibits long non-coding RNA HOTAIR activity in ovarian and breast cancer
- Author
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Özeş, Ali R., primary, Wang, Yinu, additional, Zong, Xingyue, additional, Fang, Fang, additional, Pilrose, Jay, additional, and Nephew, Kenneth P., additional
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- 2017
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28. Visual information and expert’s idea in Hurst index estimation of the fractional Brownian motion using a diffusion type approximation
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Taheriyoun, Ali R., primary and Moghimbeygi, Meisam, additional
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- 2017
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29. Rapamycin Prolongs the Survival of Corneal Epithelial Cells in Culture
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Gidfar, Sanaz, primary, Milani, Farnoud Y., additional, Milani, Behrad Y., additional, Shen, Xiang, additional, Eslani, Medi, additional, Putra, Ilham, additional, Huvard, Michael J., additional, Sagha, Hossein, additional, and Djalilian, Ali R., additional
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- 2017
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30. Stable and catalytically active iron porphyrin-based porous organic polymer: Activity as both a redox and Lewis acid catalyst
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Oveisi, Ali R., primary, Zhang, Kainan, additional, Khorramabadi-zad, Ahmad, additional, Farha, Omar K., additional, and Hupp, Joseph T., additional
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- 2015
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31. Crystalline magnetic carbon nanoparticle assisted photothermal delivery into cells using CW near-infrared laser beam
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Gu, Ling, primary, Koymen, Ali R., additional, and Mohanty, Samarendra K., additional
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- 2014
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32. Crystalline magnetic carbon nanoparticle assisted photothermal delivery into cells using CW near-infrared laser beam.
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Ling Gu, Koymen, Ali R., and Mohanty, Samarendra K.
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NANOPARTICLES , *SMALL molecules , *PROTEINS , *PLASMIDS , *NEAR infrared radiation , *MAGNETIC fields - Abstract
Efficient and targeted delivery of impermeable exogenous material such as small molecules, proteins, and plasmids into cells in culture as well as in vivo is of great importance for drug, vaccine and gene delivery for different therapeutic strategies. Though advent of optoporation by ultrafast laser microbeam has allowed spatial targeting in cells, the requirement of high peak power to create holes on the cell membrane is not practical and also challenging in vivo. Here, we report development and use of uniquely non-reactive crystalline magnetic carbon nanoparticles (CMCNPs) for photothermal delivery (PTD) of impermeable dyes and plasmids encoding light-sensitive proteins into cells using low power continuous wave near-infrared (NIR) laser beam. Further, we utilized the magnetic nature of these CMCNPs to localize them in desired region by external magnetic field, thus minimizing the required number of nanoparticles. We discovered that irradiation of the CMCNPs near the desired cell(s) with NIR laser beam leads to temperature rise that not only stretch the cell-membrane to ease delivery, it also creates fluid flow to allow mobilization of exogenous substances to the delivery. Due to significant absorption properties of the CMCNPs in the NIR therapeutic window, PTD under in vivo condition is highly possible. [ABSTRACT FROM AUTHOR]
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- 2014
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33. Precision game engineering through reshaping strategic payoffs
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Elie Eshoa and Ali R. Zomorrodi
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Medicine ,Science - Abstract
Abstract Nash equilibrium is a key concept in game theory fundamental for elucidating the equilibrium state of strategic interactions, with applications in diverse fields such as economics, political science, and biology. However, the Nash equilibrium may not always align with desired outcomes within the broader system. This article introduces a novel game engineering framework that tweaks strategic payoffs within a game to achieve a pre-defined desired Nash equilibrium while averting undesired ones. Leveraging mixed-integer linear programming, this framework identifies intricate combinations of players and strategies and optimal perturbations to their payoffs that enable the shift from undesirable Nash equilibria to more favorable ones. We demonstrate the effectiveness and scalability of our approach on games of varying complexity, ranging from simple prototype games such as the Prisoner’s Dilemma and Snowdrift games with two or more players to complex game configurations with up to $${10}^{6}$$ 10 6 entries in the payoff matrix. These studies showcase the capability of this framework in efficiently identifying the alternative ways of reshaping strategic payoffs to secure desired Nash equilibria and preclude undesired equilibrium states. Our game engineering framework offers a versatile toolkit for precision strategic decision-making with far-reaching implications across diverse domains.
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- 2024
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34. Application of physiological network mapping in the prediction of survival in critically ill patients with acute liver failure
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Tope Oyelade, Kevin P. Moore, and Ali R. Mani
- Subjects
Acute liver failure ,Acetaminophen ,Network physiology ,Network science ,Paracetamol ,Parenclitic ,Medicine ,Science - Abstract
Abstract Reduced functional connectivity of physiological systems is associated with poor prognosis in critically ill patients. However, physiological network analysis is not commonly used in clinical practice and awaits quantitative evidence. Acute liver failure (ALF) is associated with multiorgan failure and mortality. Prognostication in ALF is highly important for clinical management but is currently dependent on models that do not consider the interaction between organ systems. This study aims to examine whether physiological network analysis can predict survival in patients with ALF. Data from 640 adult patients admitted to the ICU for paracetamol-induced ALF were extracted from the MIMIC-III database. Parenclitic network analysis was performed on the routine biomarkers using 28-day survivors as reference population and network clusters were identified for survivors and non-survivors using k-clique percolation method. Network analysis showed that liver function biomarkers were more clustered in survivors than in non-survivors. Arterial pH was also found to cluster with serum creatinine and bicarbonate in survivors compared with non-survivors, where it clustered with respiratory nodes indicating physiologically distinctive compensatory mechanism. Deviation along the pH-bicarbonate and pH-creatinine axes significantly predicts mortality independent of current prognostic indicators. These results demonstrate that network analysis can provide pathophysiologic insight and predict survival in critically ill patients with ALF.
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- 2024
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35. Comparison between a deep-learning and a pixel-based approach for the automated quantification of HIV target cells in foreskin tissue
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Zhongtian Shao, Lane B. Buchanan, David Zuanazzi, Yazan N. Khan, Ali R. Khan, and Jessica L. Prodger
- Subjects
Medicine ,Science - Abstract
Abstract The availability of target cells expressing the HIV receptors CD4 and CCR5 in genital tissue is a critical determinant of HIV susceptibility during sexual transmission. Quantification of immune cells in genital tissue is therefore an important outcome for studies on HIV susceptibility and prevention. Immunofluorescence microscopy allows for precise visualization of immune cells in mucosal tissues; however, this technique is limited in clinical studies by the lack of an accurate, unbiased, high-throughput image analysis method. Current pixel-based thresholding methods for cell counting struggle in tissue regions with high cell density and autofluorescence, both of which are common features in genital tissue. We describe a deep-learning approach using the publicly available StarDist method to count cells in immunofluorescence microscopy images of foreskin stained for nuclei, CD3, CD4, and CCR5. The accuracy of the model was comparable to manual counting (gold standard) and surpassed the capability of a previously described pixel-based cell counting method. We show that the performance of our deep-learning model is robust in tissue regions with high cell density and high autofluorescence. Moreover, we show that this deep-learning analysis method is both easy to implement and to adapt for the identification of other cell types in genital mucosal tissue.
- Published
- 2024
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36. From the diagnosis of infectious keratitis to discriminating fungal subtypes; a deep learning-based study
- Author
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Mohammad Soleimani, Kosar Esmaili, Amir Rahdar, Mehdi Aminizadeh, Kasra Cheraqpour, Seyed Ali Tabatabaei, Reza Mirshahi, Zahra Bibak, Seyed Farzad Mohammadi, Raghuram Koganti, Siamak Yousefi, and Ali R. Djalilian
- Subjects
Medicine ,Science - Abstract
Abstract Infectious keratitis (IK) is a major cause of corneal opacity. IK can be caused by a variety of microorganisms. Typically, fungal ulcers carry the worst prognosis. Fungal cases can be subdivided into filamentous and yeasts, which shows fundamental differences. Delays in diagnosis or initiation of treatment increase the risk of ocular complications. Currently, the diagnosis of IK is mainly based on slit-lamp examination and corneal scrapings. Notably, these diagnostic methods have their drawbacks, including experience-dependency, tissue damage, and time consumption. Artificial intelligence (AI) is designed to mimic and enhance human decision-making. An increasing number of studies have utilized AI in the diagnosis of IK. In this paper, we propose to use AI to diagnose IK (model 1), differentiate between bacterial keratitis and fungal keratitis (model 2), and discriminate the filamentous type from the yeast type of fungal cases (model 3). Overall, 9329 slit-lamp photographs gathered from 977 patients were enrolled in the study. The models exhibited remarkable accuracy, with model 1 achieving 99.3%, model 2 at 84%, and model 3 reaching 77.5%. In conclusion, our study offers valuable support in the early identification of potential fungal and bacterial keratitis cases and helps enable timely management.
- Published
- 2023
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37. Neuroprosthetic-enabled control of graded arm muscle contraction in a paralyzed human
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David A. Friedenberg, Michael A. Schwemmer, Andrew J. Landgraf, Nicholas V. Annetta, Marcia A. Bockbrader, Chad E. Bouton, Mingming Zhang, Ali R. Rezai, W. Jerry Mysiw, Herbert S. Bresler, and Gaurav Sharma
- Subjects
Medicine ,Science - Abstract
Abstract Neuroprosthetics that combine a brain computer interface (BCI) with functional electrical stimulation (FES) can restore voluntary control of a patients’ own paralyzed limbs. To date, human studies have demonstrated an “all-or-none” type of control for a fixed number of pre-determined states, like hand-open and hand-closed. To be practical for everyday use, a BCI-FES system should enable smooth control of limb movements through a continuum of states and generate situationally appropriate, graded muscle contractions. Crucially, this functionality will allow users of BCI-FES neuroprosthetics to manipulate objects of different sizes and weights without dropping or crushing them. In this study, we present the first evidence that using a BCI-FES system, a human with tetraplegia can regain volitional, graded control of muscle contraction in his paralyzed limb. In addition, we show the critical ability of the system to generalize beyond training states and accurately generate wrist flexion states that are intermediate to training levels. These innovations provide the groundwork for enabling enhanced and more natural fine motor control of paralyzed limbs by BCI-FES neuroprosthetics.
- Published
- 2017
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38. Therapeutic targeting using tumor specific peptides inhibits long non-coding RNA HOTAIR activity in ovarian and breast cancer
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Ali R. Özeş, Yinu Wang, Xingyue Zong, Fang Fang, Jay Pilrose, and Kenneth P. Nephew
- Subjects
Medicine ,Science - Abstract
Abstract Long non-coding RNAs (lncRNAs) play key roles in human diseases, including cancer. Functional studies of the lncRNA HOTAIR (HOX transcript antisense RNA) provide compelling evidence for therapeutic targeting of HOTAIR in cancer, but targeting lncRNAs in vivo has proven to be difficult. In the current study, we describe a peptide nucleic acids (PNA)-based approach to block the ability of HOTAIR to interact with EZH2 and subsequently inhibit HOTAIR-EZH2 activity and resensitize resistant ovarian tumors to platinum. Treatment of HOTAIR-overexpressing ovarian and breast cancer cell lines with PNAs decreased invasion and increased chemotherapy sensitivity. Furthermore, the mechanism of action correlated with reduced nuclear factor-kappaB (NF-κB) activation and decreased expression of NF-κB target genes matrix metalloprotease 9 and interleukin 6. To deliver the anti-lncRNA to the acidic (pH approximately 6) tumor microenvironment, PNAs were conjugated to pH-low insertion peptide (pHLIP). Treatment of mice harboring platinum-resistant ovarian tumor xenografts with pHLIP-PNA constructs suppressed HOTAIR activity, reduced tumor formation and improved survival. This first report on pHLIP-PNA lncRNA targeting solid tumors in vivo suggests a novel cancer therapeutic approach.
- Published
- 2017
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39. Tuning the physical properties of ternary alloys (NiCuCo) for in vitro magnetic hyperthermia: experimental and theoretical investigation.
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Lemine OM, Al-Dosari N, Algessair S, Madkhali N, Elansary M, Ferdi CA, Alshammari MS, Ali R, Alanzi AZ, Belaiche M, and El-Boubbou K
- Subjects
- Humans, Magnetic Fields, Copper chemistry, Cobalt chemistry, Cell Line, Tumor, Cell Survival drug effects, Nanocomposites chemistry, Alloys chemistry, Hyperthermia, Induced methods, Nickel chemistry
- Abstract
Most of published research on magnetic hyperthermia focused on iron oxides, ferrites, and binary alloy nanostructures, while the ternary alloys attracted much limited interest. Herein, we prepared NiCuCo ternary alloy nanocomposites with variable compositions by mechanical alloying. Physical properties were fully characterized by XRD, Rietveld analysis, XPS, SEM/EDX, TEM, ZFC/FC and H-M loops. DFT calculations were used to confirm the experimental results in terms of structure and magnetism. The results showed that the fabricated nanoalloys are face centered cubic (FCC) with average core sizes of 9-40 nm and behave as superparamagnetic with saturation in the range 4.67-42.63 emu/g. Langevin fitting corroborated the superparamagnetic behavior, while law of approach to saturation (LAS) was used to calculate the magnetic anisotropy constants. Heating effciencies were performed under an alternating magnetic field (AMF, H
0 = 170 Oe and f = 332.5 kHz), and specific absorption rate (SAR) values were determined. The highest magnetic saturation (Ms ), heating potentials, and SAR values were attained for Ni35 Cu30 Co35 containing the lowest Cu but highest Ni and Co percentages, and the least for Ni15 Cu70 Co15 . Importantly, the nanoalloys reached the required temperatures for magnetic hyperthermia (42 °C) in relatively short times. We also showed that heat dissipiation can be simply tuned by changing many parameters such as concentration, field amplitude, and frequency. Finally, cytotoxicity viability assays against two different breast cancer cell lines treated with Ni25 Cu50 Co25 nanoalloy in the presence and absence of AMF were investigated. No significant decrease in cancer cell viability was observed in the absence of AMF. When tested against tumorigenic KAIMRC2 breast cancer cells under AMF, the NiCuCo nanoalloy was found to be highly potent to the cells (~ 2-fold enhancement), killing almost all the cells in short times (20 min) and clinically-safe AC magnetic fields. These findings strongly suggest that the as-prepared ternary NiCuCo nanoalloys hold great promise for potential magnetically-triggered cancer hyperthermia., (© 2024. The Author(s).)- Published
- 2024
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40. Investigation of unswept ramp system with lobe shape nozzle for fuel mixing of hydrogen jet at a scramjet engine.
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Omar I, El-Sharkawy MR, Ahmed M, Singh PK, Rajab H, Ali R, Ali NB, Rajhi W, Said LB, and Abodollahi SA
- Abstract
The role of efficient fuel mixing and a stable flame holder is crucial in enhancing the performance and capabilities of scramjet engines for high-speed flight. The present research paper has tried to disclose the fuel mixing efficiency of 3-lobe annular nozzle on the mixing mechanism of the fuel jet behind the strut. In addition, using internal air jet flow for increasing the circulation strength and fuel mixing behind the strut is also examined in this study. Numerical simulation of the flow and fuel jet behind the strut is done to reveal the main physics related to the mechanism of fuel mixing inside the combustor with the proposed injection system. The results of our simulation show that using annular 3-lobe fuel jet improve the fuel mixing via production of the multiple vortex pairs within the combustor behind the strut. The use of internal air jet also enhances the fuel mixing efficiency up to 90% in combustor of scramjet engine., (© 2024. The Author(s).)
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- 2024
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41. Impact of khat (Catha edulis) and oral contraceptive use on telomerase levels and tumor suppressor genes p53 and p21 in normal subjects and breast cancer patients.
- Author
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Atroosh F, Al-Habori M, Al-Eryani E, and Saif-Ali R
- Subjects
- Humans, Female, Adult, Contraceptives, Oral adverse effects, Case-Control Studies, Catha, Telomerase genetics, Telomerase metabolism, Breast Neoplasms genetics, Tumor Suppressor Protein p53 genetics, Tumor Suppressor Protein p53 metabolism, Cyclin-Dependent Kinase Inhibitor p21 genetics, Cyclin-Dependent Kinase Inhibitor p21 metabolism
- Abstract
This study aimed to evaluate the effects of oral contraceptive (OC) use, khat chewing, and their combined effect on telomerase level and tumor suppressor genes, p53 and p21 in breast cancer (BC) patients and normal volunteers. 140 Yemeni women aged 25-40 years old enrolled, 60 newly diagnosed pretreated BC patients, and 80 control subjects. Venous blood (5 ml) was collected and the results showed BC patients to have significantly raised levels of telomerase, p53, and p21 compared to the control group. The use of OCs significantly raised telomerase in control group with no effect in BC patients; whereas p53 and p21 were significantly increased in BC patients. On the other hand, khat chewing significantly increased p53 in controls and BC patients, whereas p21 was significantly raised in BC patients. The combined use of OCs and khat chewing significantly increased telomerase and p53 in control group, and significantly increased p53 and p21 in BC patients. Telomerase was shown to be a risk factor (OR 4.4) for BC, and the use of OCs was a high-risk factor for increasing telomerase (OR 27.8) in normal subjects. In contrast, khat chewing was shown to be protective (OR 0.142), and the combined use of OCs and khat chewing decreased the risk factor of telomerase from OR 27.8 to 2.1., (© 2024. The Author(s).)
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- 2024
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42. HALP score as a novel prognostic factor for patients with myelodysplastic syndromes.
- Author
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Gursoy V, Sadri S, Kucukelyas HD, Hunutlu FC, Pinar IE, Yegen ZS, Alkış N, Ersal T, Ali R, Ozkocaman V, and Ozkalemkas F
- Subjects
- Humans, Male, Aged, Female, Middle Aged, Prognosis, Aged, 80 and over, Adult, Retrospective Studies, Hemoglobins analysis, Hemoglobins metabolism, Young Adult, ROC Curve, Blood Platelets pathology, Lymphocytes pathology, Platelet Count, Myelodysplastic Syndromes mortality, Myelodysplastic Syndromes diagnosis, Myelodysplastic Syndromes drug therapy, Myelodysplastic Syndromes pathology
- Abstract
Myelodysplastic syndrome (MDS) is a heterogeneous spectrum of clonal hematopoietic disorders with varying degrees of cytopenia and morphologic dysplasia. The hemoglobin, albumin, lymphocyte, and platelet (HALP) score is a prognostic marker in several types of malignant tumors. Prognostic value of HALP score remains unclear for MDS. To determine the prognostic value of baseline HALP score in MDS. We retrospectively analyzed data from 130 newly diagnosed MDS patients evaluated and classified under HALP score. By the receiver operating characteristic (ROC) analysis, the optimal cut-off value of HALP was > 67.5 in predicting mortality. Patients were divided into two groups: with low and high HALP scores, and the characteristics were compared between both groups. Patients' median age was 68 (19-84) years, and 79 (60.8%) were male. Higher HALP score was detected in MDS patients with intermediate-risk under IPSS score, and at high and very high risks under IPSS-R score, and those receiving azacitidine (AZA) treatment. The survival rates of those with a HALP score > 67.5 were significantly lower than those with low HALP score at 17.77 ± 3.98 (median ± SE) (p < 0.001). The 3-, 5- and 10-years survival rates of individuals with HALP scores > 67.5 were found as 25, 18, and 11%, respectively. Median overall survival (OS) was also determined as 33.10 (95% CI 16.34-49.88) months by the Kaplan-Meier method. HALP score has shown an ability to be a useful prognostic biomarker in various cancers, including MDS. The meaningful cut-off value of HALP is disease-specific and largely study-specific. High HALP score is associated with unfavorable clinicopathological characteristics. Also, it may be useful in predicting OS and mortality of MDS., (© 2024. The Author(s).)
- Published
- 2024
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43. Investigates the ability of plant extracts from Lens culinaris to protect zucchini from the Zucchini yellow mosaic virus (ZYMV).
- Author
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Ali R, Eldidamony G, Askora A, and Galal A
- Subjects
- Cucurbita chemistry, Cucurbita virology, Mosaic Viruses drug effects, Mosaic Viruses physiology, Chlorophyll metabolism, Disease Resistance drug effects, Plant Extracts pharmacology, Lens Plant chemistry, Plant Diseases virology, Plant Diseases prevention & control, Plant Leaves chemistry, Plant Leaves virology, Plant Leaves metabolism
- Abstract
Evaluate the impact of extracts from the Lens culinaris plant on a number of physiological and biochemical parameters in squash leaves infected with ZYMV in this work. Compared to the untreated leaves, ZYMV infected leaves showed a range of symptoms, such as severe mosaic, size reduction, stunting, and deformation. Analysis of physiological data revealed that L. culinaris extract lectin therapies and viral infections had an impact on metabolism. Protein, carbohydrate, and pigment levels were all lowered by viral infection. However, phenolic compounds, total protein, total carbohydrates, total amino acids, proline, total chlorophyll and peroxidases levels are considerably elevated with all extract therapies. The other biochemical parameters also displayed a variety of changes. Moreover shoot length, number of leaves and number of flowers was significantly increased compared to viral control in all treatments. The L. culinaris extract treatment increases the plant's ZYMV resistance. This is detectable through reduction of the plants treated with lentil lectin pre and post virus inoculation, reduction in disease severity and viral concentration, and percentage of the infected plants has a virus. All findings demonstrate significant metabolic alterations brought by viral infections or L. culinaris extract treatments, and they also suggest that exogenous extract treatments is essential for activating the body's defences against ZYMV infection., (© 2024. The Author(s).)
- Published
- 2024
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44. Author Correction: Evaluation of the anti-inflammatory, analgesic, anti-pyretic and anti-ulcerogenic potentials of synthetic indole derivatives.
- Author
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Siddique S, Ahmad KR, Nawaz SK, Raza AR, Ahmad SN, Ali R, Inayat I, Suleman S, Kanwal MA, and Usman M
- Published
- 2024
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45. A novel SpaSA based hyper-parameter optimized FCEDN with adaptive CNN classification for skin cancer detection.
- Author
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Ali R, Manikandan A, Lei R, and Xu J
- Subjects
- Humans, Image Processing, Computer-Assisted methods, Image Interpretation, Computer-Assisted methods, Skin pathology, Skin diagnostic imaging, Skin Neoplasms diagnosis, Skin Neoplasms diagnostic imaging, Skin Neoplasms classification, Skin Neoplasms pathology, Algorithms, Neural Networks, Computer, Dermoscopy methods
- Abstract
Skin cancer is the most prevalent kind of cancer in people. It is estimated that more than 1 million people get skin cancer every year in the world. The effectiveness of the disease's therapy is significantly impacted by early identification of this illness. Preprocessing is the initial detecting stage in enhancing the quality of skin images by removing undesired background noise and objects. This study aims is to compile preprocessing techniques for skin cancer imaging that are currently accessible. Researchers looking into automated skin cancer diagnosis might use this article as an excellent place to start. The fully convolutional encoder-decoder network and Sparrow search algorithm (FCEDN-SpaSA) are proposed in this study for the segmentation of dermoscopic images. The individual wolf method and the ensemble ghosting technique are integrated to generate a neighbour-based search strategy in SpaSA for stressing the correct balance between navigation and exploitation. The classification procedure is accomplished by using an adaptive CNN technique to discriminate between normal skin and malignant skin lesions suggestive of disease. Our method provides classification accuracies comparable to commonly used incremental learning techniques while using less energy, storage space, memory access, and training time (only network updates with new training samples, no network sharing). In a simulation, the segmentation performance of the proposed technique on the ISBI 2017, ISIC 2018, and PH2 datasets reached accuracies of 95.28%, 95.89%, 92.70%, and 98.78%, respectively, on the same dataset and assessed the classification performance. It is accurate 91.67% of the time. The efficiency of the suggested strategy is demonstrated through comparisons with cutting-edge methodologies., (© 2024. The Author(s).)
- Published
- 2024
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46. Author Correction: Analysis and comparative study of a deterministic mathematical model of SARS-COV-2 with fractal-fractional operators: a case study.
- Author
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Kubra KT, Ali R, Alqahtani RT, Gulshan S, and Iqbal Z
- Published
- 2024
- Full Text
- View/download PDF
47. Exploring the potential of Ziziphus nummularia and luteolin-7-O-glucoside as tubulin inhibitors in cancer therapy and survival.
- Author
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Alghamdi SS, Alghashem SA, Ali R, Alsubait A, Suliman RS, Mohammed AE, Alehaideb Z, Alshafi RA, Alturki AY, and Rahman I
- Subjects
- Plant Extracts pharmacology, Tubulin Modulators, Ligands, Tubulin, Ethanol, Ziziphus chemistry, Neoplasms, Acetates, Glucosides, Luteolin
- Abstract
Cancer is responsible for approximately 10 million deaths worldwide, with 70% of the deaths occurring in low- and middle-income countries; as such safer and more effective anti-cancer drugs are required. Therefore, the potential benefits of Ziziphus nummularia and Ziziphus spina-christi as sources of anti-cancer agents were investigated. Z. nummularia and Z. spina-christi extracts were prepared using chloroform, ethanol, ethyl acetate, and water. The extracts' anti-cancer properties were determined using the MTT Cell Viability Assay in four cancer cell lines: breast (KAIMRC2 and MDA-MB-231), colorectal (HCT8), and liver (HepG2). The ApoTox-Glo Triplex Assay and high-content imaging (HCI)-Apoptosis Assay were used to assess KAIMRC2 and HCT8 cells further. In addition, KAIMRC2 cells were tested for microtubule staining, and AKT/mTOR protein expression was determined by western blot analysis. Liquid chromatography-mass spectrometry (LC-MS) was performed to identify the secondary metabolites in the ethanol and ethyl acetate extracts, followed by in silico techniques to predict molecular targets and interactions, safety, and pharmacokinetic profile for identified metabolites. Out of the eight extracts, the ethanolic extract of Z. nummularia, exhibited the most potent activity against KAIMRC2 cells with an IC
50 value of 29.2 μg/ml. Cancer cell treatment with the ethanolic extract of Z. nummularia resulted in a dose-dependent decrease in cell viability with increased apoptosis and cytotoxic effects. Microtubule staining showed a disrupted microtubular network. The ethanolic extract treatment of KAIMRC2 cells led to upregulated expression of pAKT and pmTOR. In silico studies predicted luteolin-7-O-glucoside to be a ligand for tubulin with the highest docking score (- 7.686) and similar binding interactions relative to the native ligand. Further computational analysis of the metabolites showed acceptable pharmacokinetic and safety profiles, although ethanolic extract metabolites were predicted to have cardiotoxic effects. Ethanolic extraction is optimal for solubilizing active anticancer metabolites from Z. nummularia, which may act by causing M-phase arrest via inhibition of tubulin polymerization. Luteolin-7-O-glucoside is the lead candidate for further research and development as an anti-cancer agent. In addition, this study suggests that herbal treatment could switch on mechanisms of adaptation and survival in cancer cells., (© 2024. The Author(s).)- Published
- 2024
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- View/download PDF
48. Analysis and comparative study of a deterministic mathematical model of SARS-COV-2 with fractal-fractional operators: a case study.
- Author
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Kubra KT, Ali R, Alqahtani RT, Gulshan S, and Iqbal Z
- Subjects
- Humans, SARS-CoV-2, Basic Reproduction Number, Pakistan, Fractals, COVID-19
- Abstract
In this paper, we investigate a fractal-fractional-order mathematical model with the influence of hospitalized patients and the impact of vaccination with fractal-fractional operators. The respective derivatives are considered in the Caputo, Caputo Fabrizio, and Atangana-Baleanu senses of fractional order α and fractal dimension τ . For the proposed problem, some results regarding basic reproduction number and stability are given. Using the next-generation matrix approach, we have investigated the global and local stability of several types of equilibrium points. We provide a detailed analysis of the existence and uniqueness of the solution. Moreover, we fit the model with the real data of Pakistan from June 01, 2020, till March 24, 2021. Then, we use the fractal-fractional derivative to find a numerical solution for the model. MATLAB software is used for numerical illustration. Graphical presentations corresponding to different parameteric values are given as well., (© 2024. The Author(s).)
- Published
- 2024
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49. The influence of adolescents essential and non-essential use of technology and Internet addiction on their physical and mental fatigues.
- Author
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Aziz M, Chemnad K, Al-Harahsheh S, Abdelmoneium AO, Bagdady A, Hassan DA, and Ali R
- Subjects
- Humans, Adolescent, Cross-Sectional Studies, Depression, Physical Examination, Internet, Internet Addiction Disorder, Behavior, Addictive
- Abstract
This study explores the impact of Internet addiction (IA), age, and essential and non-essential technology usage time on the physical and mental fatigue of adolescents. The research surveyed 477 adolescents from Qatar and employed the Internet Addiction Diagnostic Questionnaire (IADQ) and Chalder's Fatigue Scale for data collection. Multiple linear regression and Mann-Whitney U tests were utilized for analysis. The findings indicate that IA, non-essential usage time, and age are positively associated with overall fatigue among adolescents. IA and non-essential usage time are positively linked to physical fatigue, while IA, non-essential usage time, and age are positive predictors of mental fatigue. However, essential usage time is negatively associated with mental fatigue. These results highlight the importance of distinguishing technology usage based on intent and necessity, as well as differentiating between physical and mental fatigue when examining problematic technology usage. This study is among the few conducted in the Middle Eastern context., (© 2024. The Author(s).)
- Published
- 2024
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50. A nested cohort 5-year Canadian surveillance of Gram-negative antimicrobial resistance for optimized antimicrobial therapy.
- Author
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Blondeau J, Charles MK, Loo V, Adam H, Gonzalez Del Vecchio M, Ghakis C, O'Callaghan E, and El Ali R
- Subjects
- Adult, Humans, Escherichia coli, Canada epidemiology, Drug Resistance, Bacterial, Tazobactam, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents therapeutic use, Anti-Infective Agents
- Abstract
We analyzed 5 years (2016-2020) of nested Canadian data from the Study for Monitoring Antimicrobial Resistance Trends (SMART) to identify pathogen predominance and antimicrobial resistance (AMR) patterns of adult Gram-negative infections in Canadian health care and to complement other public surveillance programs and studies in Canada. A total of 6853 isolates were analyzed from medical (44%), surgical (18%), intensive care (22%) and emergency units (15%) and from respiratory tract (36%), intra-abdominal (25%), urinary tract (24%) and bloodstream (15%) infections. Overall, E. coli (36%), P. aeruginosa (18%) and K. pneumoniae (12%) were the most frequent isolates and P. aeruginosa was the most common respiratory pathogen. 18% of Enterobacterales species were ESBL positive. Collective susceptibility profiles showed that P. aeruginosa isolates were highly susceptible (> 95%) to ceftolozane/tazobactam and colistin, though markedly less susceptible (58-74%) to other antimicrobials tested. Multi-drug resistance (MDR) was present in 10% of P. aeruginosa isolates and was more frequent in those from respiratory infections and from ICU than non-ICU locations. Of P. aeruginosa isolates that were resistant to combinations of ceftazidime, piperacillin/tazobactam and meropenem, 73-96% were susceptible to ceftolozane/tazobactam over the period of the study. These national data can now be combined with clinical prediction rules and genomic data to enable expert antimicrobial stewardship applications and guide treatment policies to optimize adult patient care., (© 2023. Springer Nature Limited.)
- Published
- 2023
- Full Text
- View/download PDF
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