5 results on '"Braidy N"'
Search Results
2. Unmixing noisy co-registered spectrum images of multicomponent nanostructures.
- Author
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Braidy N and Gosselin R
- Abstract
Analytical electron microscopy plays a key role in the development of novel nanomaterials. Electron energy-loss spectroscopy (EELS) and energy-dispersive X-ray spectroscopy (EDX) datasets are typically processed to isolate the background-subtracted elemental signal. Multivariate tools have emerged as powerful methods to blindly map the components, which addresses some of the shortcomings of the traditional methods. Here, we demonstrate the superior performance of a new multivariate optimization method using a challenging EELS and EDX dataset. The dataset was recorded from a spectrum image P-type metal-oxide-semiconductor stack with 7 components exhibiting heavy spectral overlap and a low signal-to-noise ratio. Compared to peak integration, independent component analysis, Baysian Linear Unmixing and Non-negative matrix factorization, the method proposed was the only one to identify the EELS spectra of all 7 components with the corresponding abundance profiles. Using the abundance of each component, it was possible to retrieve the EDX spectra of all the components, which were otherwise impossible to isolate, regardless of the method used. We expect that this robust method will bring a significant improvement for the chemical analysis of nanomaterials, especially for weak signals, dose-sensitive specimen or signals suffering heavy spectral overlap.
- Published
- 2019
- Full Text
- View/download PDF
3. Multi-copper ferroxidase deficiency leads to iron accumulation and oxidative damage in astrocytes and oligodendrocytes.
- Author
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Chen Z, Jiang R, Chen M, Zheng J, Chen M, Braidy N, Liu S, Liu G, Maimaitiming Z, Shen T, Dunaief JL, Vulpe CD, Anderson GJ, and Chen H
- Subjects
- Animals, Astrocytes cytology, Astrocytes metabolism, Ceruloplasmin deficiency, Membrane Proteins deficiency, Mice, Mice, Inbred C57BL, Mice, Knockout, Oligodendroglia cytology, Oligodendroglia metabolism, Ceruloplasmin genetics, Iron metabolism, Membrane Proteins genetics, Oxidative Stress genetics
- Abstract
Accumulation of iron has been associated with the pathobiology of various disorders of the central nervous system. Our previous work has shown that hephaestin (Heph) and ceruloplasmin (Cp) double knockout (KO) mice induced iron accumulation in multiple brain regions and that this was paralleled by increased oxidative damage and deficits in cognition and memory. In this study, we enriched astrocytes and oligodendrocytes from the cerebral cortex of neonatal wild-type (WT), Heph KO and Cp KO mice. We demonstrated that Heph is highly expressed in oligodendrocytes, while Cp is mainly expressed in astrocytes. Iron efflux was impaired in Cp KO astrocytes and Heph KO oligodendrocytes and was associated with increased oxidative stress. The expression of Heph, Cp, and other iron-related genes was examined in astrocytes and oligodendrocytes both with and without iron treatment. Interestingly, we found that the expression of the mRNA encoding ferroportin 1, a transmembrane protein that cooperates with CP and HEPH to export iron from cells, was positively correlated with Cp expression in astrocytes, and with Heph expression in oligodendrocytes. Our findings collectively demonstrate that HEPH and CP are important for the prevention of glial iron accumulation and thus may be protective against oxidative damage.
- Published
- 2019
- Full Text
- View/download PDF
4. Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes.
- Author
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Mirzaei M, Gupta VB, Chick JM, Greco TM, Wu Y, Chitranshi N, Wall RV, Hone E, Deng L, Dheer Y, Abbasi M, Rezaeian M, Braidy N, You Y, Salekdeh GH, Haynes PA, Molloy MP, Martins R, Cristea IM, Gygi SP, Graham SL, and Gupta VK
- Subjects
- Aged, Alzheimer Disease metabolism, Alzheimer Disease pathology, Biomarkers metabolism, Blood Coagulation, Cholesterol metabolism, Complement Activation, Complement System Proteins metabolism, Down-Regulation, Electron Transport, Female, Humans, Male, Membrane Transport Proteins metabolism, Middle Aged, Mitochondria metabolism, Neurodegenerative Diseases pathology, Protein Interaction Maps, Quality Control, Spectrometry, Mass, Electrospray Ionization, Tandem Mass Spectrometry, Up-Regulation, Aging metabolism, Aging pathology, Eye Proteins metabolism, Glaucoma metabolism, Neurodegenerative Diseases metabolism, Proteome metabolism, Retina metabolism, Vitreous Body metabolism
- Abstract
Abstarct: Glaucoma is a chronic disease that shares many similarities with other neurodegenerative disorders of the central nervous system. This study was designed to evaluate the association between glaucoma and other neurodegenerative disorders by investigating glaucoma-associated protein changes in the retina and vitreous humour. The multiplexed Tandem Mass Tag based proteomics (TMT-MS3) was carried out on retinal tissue and vitreous humour fluid collected from glaucoma patients and age-matched controls followed by functional pathway and protein network interaction analysis. About 5000 proteins were quantified from retinal tissue and vitreous fluid of glaucoma and control eyes. Of the differentially regulated proteins, 122 were found linked with pathophysiology of Alzheimer's disease (AD). Pathway analyses of differentially regulated proteins indicate defects in mitochondrial oxidative phosphorylation machinery. The classical complement pathway associated proteins were activated in the glaucoma samples suggesting an innate inflammatory response. The majority of common differentially regulated proteins in both tissues were members of functional protein networks associated brain changes in AD and other chronic degenerative conditions. Identification of previously reported and novel pathways in glaucoma that overlap with other CNS neurodegenerative disorders promises to provide renewed understanding of the aetiology and pathogenesis of age related neurodegenerative diseases.
- Published
- 2017
- Full Text
- View/download PDF
5. Gliotoxicity of the cyanotoxin, β-methyl-amino-L-alanine (BMAA).
- Author
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Chiu AS, Gehringer MM, Braidy N, Guillemin GJ, Welch JH, and Neilan BA
- Subjects
- Animals, Calcium metabolism, Cells, Cultured, Cyanobacteria Toxins, Lactate Dehydrogenases metabolism, Mitochondria drug effects, Mitochondria metabolism, Olfactory Mucosa cytology, Olfactory Mucosa drug effects, Olfactory Mucosa metabolism, Rats, Reactive Oxygen Species metabolism, Amino Acids, Diamino toxicity, Excitatory Amino Acid Agonists toxicity, Neuroglia drug effects
- Abstract
The amino acid variant β-methyl-amino-L-alanine (BMAA) has long been associated with the increased incidence and progression of the amyotrophic lateral sclerosis/Parkinsonism dementia complex (ALS/PDC). Previous studies have indicated that BMAA damages neurons via excitotoxic mechanisms. We have challenged rat olfactory ensheathing cells (OECs) with exogenous BMAA and found it to be cytotoxic. BMAA also induces a significant increase in Ca2+ influx, enhanced production of reactive oxygen species (ROS), and disrupts mitochondrial activity in OECs. This is the first study investigating BMAA toxicity using pure glial cells. These findings align BMAA with the three proposed mechanisms of degeneration in ALS, those being non-cell autonomous death, excitotoxicity and mitochondrial dysfunction.
- Published
- 2013
- Full Text
- View/download PDF
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