9 results on '"Jafari R"'
Search Results
2. Dynamical Quantum Phase Transition and Quasi Particle Excitation
- Author
-
Jafari, R.
- Published
- 2019
- Full Text
- View/download PDF
3. Designing a T-cell epitope-based vaccine using in silico approaches against the Sal k 1 allergen of Salsola kali plant.
- Author
-
Shams MH, Sohrabi SM, Jafari R, Sheikhian A, Motedayyen H, Baharvand PA, Hasanvand A, Fouladvand A, and Assarehzadegan MA
- Subjects
- Humans, Allergens, Epitopes, T-Lymphocyte, Molecular Docking Simulation, Toll-Like Receptor 4 genetics, Antigens, Plant, Epitopes, B-Lymphocyte, Computational Biology, Vaccines, Subunit, Salsola, Chenopodiaceae metabolism, Vaccines
- Abstract
Allergens originated from Salsola kali (Russian thistle) pollen grains are one of the most important sources of aeroallergens causing pollinosis in desert and semi-desert regions. T-cell epitope-based vaccines (TEV) are more effective among different therapeutic approaches developed to alleviate allergic diseases. The physicochemical properties, and B as well as T cell epitopes of Sal k 1 (a major allergen of S. kali) were predicted using immunoinformatic tools. A TEV was constructed using the linkers EAAAK, GPGPG and the most suitable CD4
+ T cell epitopes. RS04 adjuvant was added as a TLR4 agonist to the amino (N) and carboxyl (C) terminus of the TEV protein. The secondary and tertiary structures, solubility, allergenicity, toxicity, stability, physicochemical properties, docking with immune receptors, BLASTp against the human and microbiota proteomes, and in silico cloning of the designed TEV were assessed using immunoinformatic analyses. Two CD4+ T cell epitopes of Sal k1 that had high affinity with different alleles of MHC-II were selected and used in the TEV. The molecular docking of the TEV with HLADRB1, and TLR4 showed TEV strong interactions and stable binding pose to these receptors. Moreover, the codon optimized TEV sequence was cloned between NcoI and XhoI restriction sites of pET-28a(+) expression plasmid. The designed TEV can be used as a promising candidate in allergen-specific immunotherapy against S. kali. Nonetheless, effectiveness of this vaccine should be validated through immunological bioassays., (© 2024. The Author(s).)- Published
- 2024
- Full Text
- View/download PDF
4. Targeting autophagy as a therapeutic strategy in pediatric acute lymphoblastic leukemia.
- Author
-
Bwanika HC, Leo IR, Struyf N, Talanti A, Aswad L, Konnur A, Björklund AC, Heyman M, Rassidakis G, Erkers T, Seashore-Ludlow B, Jafari R, and Pokrovskaja Tamm K
- Subjects
- Child, Humans, Autophagy, Cell Line, Glucocorticoids therapeutic use, Cell Line, Tumor, Apoptosis, Precursor Cell Lymphoblastic Leukemia-Lymphoma drug therapy, Precursor Cell Lymphoblastic Leukemia-Lymphoma genetics, Precursor Cell Lymphoblastic Leukemia-Lymphoma pathology, Precursor B-Cell Lymphoblastic Leukemia-Lymphoma genetics
- Abstract
Autophagy is activated in response to a variety of stress conditions including anti-cancer therapies, and tumors cells often depend on autophagy for survival. In this study, we have evaluated inhibition of autophagy as therapeutic strategy in acute lymphoblastic leukemia (ALL) in children, both as a single treatment and in combination with glucocorticoid (GC) Dexamethasone (Dexa). Analysis of proteomics and RNA-seq of ALL cell lines and primary samples identified an upregulation of Vps34 and ATG14 proteins and autophagy and lysosomal pathway enrichment in a genetic subgroup with a recurrent t(12;21) translocation. Cells from this sugbroup were also significantly more sensitive to the selective autophagy or lysosomal inhibitors than cells with other genetic rearrangements. Further, combination of Dexa with either lysosomal or autophagy inhibitors was either synergistic or additive in killing leukemic cells across various genetic and lineage backgrounds, for both cell lines and primary samples, as assessed using viability assays and SynergyFinder as well as apoptotic caspase 3/7-based live-cell assays. Our data demonstrate that targeting autophagy represents a promising strategy for the treatment of pediatric ALL, both as a selective modality for the t(12;21) pre-B-ALL subgroup, and in combination treatments to sensitize to GC-induced cytotoxicity., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
5. Rodents as vehicle for delivery of transgenic bacteria to make paratransgenic sand fly vectors of cutaneous leishmaniasis in field condition.
- Author
-
Ghassemi M, Akhavan AA, Zahraei-Ramazani A, Yakhchali B, Arandian MH, Jafari R, Akhlaghi M, Shirani-Bidabadi L, Azam K, Koosha M, and Oshaghi MA
- Abstract
Vector-borne diseases, among them leishmaniasis, cause more than 700,000 deaths annually. The lack of an effective vaccination and the increasing resistance of sand flies to insecticides require the urgent development of innovative approaches to contain the disease. The use of engineered bacteria that express anti-parasite molecules (paratransgenesis) shows much promise. However, a challenge for implementation of this strategy is to devise means to introduce modified bacteria into sand flies in the field. In this study, we use rodent food bait as a delivery strategy to introduce two mCherry-fluorescent bacteria, Serratia AS1 and Enterobacter cloacae, into adult sand flies in field settings. Bacteria-infected food was provided to Rhombomys opimus rodents. These bacteria transiently pass through the rodent alimentary tract and are delivered to larval habitats with the rodent feces. The feces are ingested by sand fly larvae and, in the case of Serratia AS1, are trans-stadially transmitted to adults. This is the first report of targeting delivery of Serratia AS1 in a paratransgenic system to control transmission of leishmaniasis under field condition. This novel strategy shows promise for delivering transgenic bacteria to Leishmania vectors in the field., (© 2023. Springer Nature Limited.)
- Published
- 2023
- Full Text
- View/download PDF
6. Predicting current and future high-risk areas for vectors and reservoirs of cutaneous leishmaniasis in Iran.
- Author
-
Bozorg-Omid F, Kafash A, Jafari R, Akhavan AA, Rahimi M, Rahimi Foroushani A, Youssefi F, Shirzadi MR, Ostadtaghizadeh A, and Hanafi-Bojd AA
- Subjects
- Humans, Iran epidemiology, Incidence, Risk Factors, Leishmaniasis, Cutaneous epidemiology
- Abstract
Climate change will affect the distribution of species in the future. To determine the vulnerable areas relating to CL in Iran, we applied two models, MaxEnt and RF, for the projection of the future distribution of the main vectors and reservoirs of CL. The results of the models were compared in terms of performance, species distribution maps, and the gain, loss, and stable areas. The models provided a reasonable estimate of species distribution. The results showed that the Northern and Southern counties of Iran, which currently do not have a high incidence of CL may witness new foci in the future. The Western, and Southwestern regions of the Country, which currently have high habitat suitability for the presence of some vectors and reservoirs, will probably significantly decrease in the future. Furthermore, the most stable areas are for T. indica and M. hurrianae in the future. So that, this species may remain a major reservoir in areas that are present under current conditions. With more local studies in the field of identifying vulnerable areas to CL, it can be suggested that the national CL control guidelines should be revised to include a section as a climate change adaptation plan., (© 2023. The Author(s).)
- Published
- 2023
- Full Text
- View/download PDF
7. Reliable determination of pulse-shape instability in trains of ultrashort laser pulses using frequency-resolved optical gating.
- Author
-
Jafari R, Khosravi SD, and Trebino R
- Abstract
We describe a reliable approach for determining the presence of pulse-shape instability in a train of ultrashort laser pulses. While frequency-resolved optical gating (FROG) has been shown to successfully perform this task by displaying a discrepancy between the measured and retrieved traces for unstable trains, it fails if its pulse-retrieval algorithm stagnates because algorithm stagnation and pulse-shape instability can be indistinguishable. So, a non-stagnating algorithm-even in the presence of instability-is required. The recently introduced Retrieved-Amplitude N-grid Algorithmic (RANA) approach has achieved extremely reliable (100%) pulse-retrieval in FROG for trains of stable pulse shapes, even in the presence of noise, and so is a promising candidate for an algorithm that can definitively distinguish stable and unstable pulse-shape trains. But it has not yet been considered for trains of pulses with pulse-shape instability. So, here, we investigate its performance for unstable trains of pulses with random pulse shapes. We consider trains of complex pulses measured by second-harmonic-generation FROG using the RANA approach and compare its performance to the well-known generalized-projections (GP) algorithm without the RANA enhancements. We show that the standard GP algorithm frequently fails to converge for such unstable pulse trains, yielding highly variable trace discrepancies. As a result, it is an unreliable indicator of instability. Using the RANA approach, on the other hand, we find zero stagnations, even for highly unstable pulse trains, and we conclude that FROG, coupled with the RANA approach, provides a highly reliable indicator of pulse-shape instability. It also provides a typical pulse length, spectral width, and time-bandwidth product, even in cases of instability., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
8. Cuffless blood pressure monitoring from a wristband with calibration-free algorithms for sensing location based on bio-impedance sensor array and autoencoder.
- Author
-
Ibrahim B and Jafari R
- Subjects
- Adult, Electric Impedance, Equipment Design, Humans, Neural Networks, Computer, Predictive Value of Tests, Pulsatile Flow, Reproducibility of Results, Signal Processing, Computer-Assisted, Time Factors, Young Adult, Arterial Pressure, Biosensing Techniques instrumentation, Blood Pressure Determination instrumentation, Transducers, Wearable Electronic Devices, Wrist blood supply
- Abstract
Continuous monitoring of blood pressure (BP) is essential for the prediction and the prevention of cardiovascular diseases. Cuffless BP methods based on non-invasive sensors integrated into wearable devices can translate blood pulsatile activity into continuous BP data. However, local blood pulsatile sensors from wearable devices suffer from inaccurate pulsatile activity measurement based on superficial capillaries, large form-factor devices and BP variation with sensor location which degrade the accuracy of BP estimation and the device wearability. This study presents a cuffless BP monitoring method based on a novel bio-impedance (Bio-Z) sensor array built in a flexible wristband with small-form factor that provides a robust blood pulsatile sensing and BP estimation without calibration methods for the sensing location. We use a convolutional neural network (CNN) autoencoder that reconstructs an accurate estimate of the arterial pulse signal independent of sensing location from a group of six Bio-Z sensors within the sensor array. We rely on an Adaptive Boosting regression model which maps the features of the estimated arterial pulse signal to systolic and diastolic BP readings. BP was accurately estimated with average error and correlation coefficient of 0.5 ± 5.0 mmHg and 0.80 for diastolic BP, and 0.2 ± 6.5 mmHg and 0.79 for systolic BP, respectively., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
9. All-fiber ultrafast amplifier at 1.9 μm based on thulium-doped normal dispersion fiber and LMA fiber compressor.
- Author
-
Voropaev V, Batov D, Voronets A, Vlasov D, Jafari R, Donodin A, Tarabrin M, Trebino R, and Lazarev V
- Abstract
The duration reduction and the peak power increase of ultrashort pulses generated by all-fiber sources at a wavelength of [Formula: see text] are urgent tasks. Finding an effective and easy way to improve these characteristics of ultrafast lasers can allow a broad implementation of wideband coherent supercontinuum sources in the mid-IR range required for various applications. As an alternative approach to sub-100 fs pulse generation, we present an ultrafast all-fiber amplifier based on a normal-dispersion germanosilicate thulium-doped active fiber and a large-mode-area silica-fiber compressor. The output pulses have the following characteristics: the central wavelength of [Formula: see text], the repetition rate of 23.8 MHz, the energy per pulse period of 25 nJ, the average power of 600 mW, and a random output polarization. The pulse intensity and phase profiles were measured via the second-harmonic-generation frequency-resolved optical gating technique for a linearly polarized pulse. The linearly polarized pulse has a duration of 71 fs and a peak power of 128.7 kW. The maximum estimated peak power for all polarizations is 220 kW. The dynamics of ultrashort-pulse propagation in the amplifier were analyzed using numerical simulations., (© 2021. The Author(s).)
- Published
- 2021
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.