10 results on '"Nagaraj N"'
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2. Unified framework for laser-induced transient bubble dynamics within microchannels
- Author
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Nagaraj Nagalingam, Vikram Korede, Daniel Irimia, Jerry Westerweel, Johan T. Padding, Remco Hartkamp, and Hüseyin Burak Eral
- Subjects
Medicine ,Science - Abstract
Abstract Oscillatory flow in confined spaces is central to understanding physiological flows and rational design of synthetic periodic-actuation based micromachines. Using theory and experiments on oscillating flows generated through a laser-induced cavitation bubble, we associate the dynamic bubble size (fluid velocity) and bubble lifetime to the laser energy supplied—a control parameter in experiments. Employing different channel cross-section shapes, sizes and lengths, we demonstrate the characteristic scales for velocity, time and energy to depend solely on the channel geometry. Contrary to the generally assumed absence of instability in low Reynolds number flows ( $$
- Published
- 2024
- Full Text
- View/download PDF
3. Publisher Correction: Unified framework for laser-induced transient bubble dynamics within microchannels.
- Author
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Nagalingam N, Korede V, Irimia D, Westerweel J, Padding JT, Hartkamp R, and Eral HB
- Published
- 2024
- Full Text
- View/download PDF
4. Unified framework for laser-induced transient bubble dynamics within microchannels.
- Author
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Nagalingam N, Korede V, Irimia D, Westerweel J, Padding JT, Hartkamp R, and Eral HB
- Abstract
Oscillatory flow in confined spaces is central to understanding physiological flows and rational design of synthetic periodic-actuation based micromachines. Using theory and experiments on oscillating flows generated through a laser-induced cavitation bubble, we associate the dynamic bubble size (fluid velocity) and bubble lifetime to the laser energy supplied-a control parameter in experiments. Employing different channel cross-section shapes, sizes and lengths, we demonstrate the characteristic scales for velocity, time and energy to depend solely on the channel geometry. Contrary to the generally assumed absence of instability in low Reynolds number flows ( < 1000 ), we report a momentary flow distortion that originates due to the boundary layer separation near channel walls during flow deceleration. The emergence of distorted laminar states is characterized using two stages. First the conditions for the onset of instabilities is analyzed using the Reynolds number and Womersley number for oscillating flows. Second the growth and the ability of an instability to prevail is analyzed using the convective time scale of the flow. Our findings inform rational design of microsystems leveraging pulsatile flows via cavitation-powered microactuation., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
5. De novo transcriptome profiling and development of novel secondary metabolites based genic SSRs in medicinal plant Phyllanthus emblica L. (Aonla).
- Author
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Kapoor B, Sharma M, Sharma R, Zadokar A, Thakur A, Sharma P, Kumar S, Rozar KP, Kumar KS, Hegde N, and Pandey D
- Subjects
- Sequence Analysis, DNA, Genes, Plant, Gene Expression Profiling, Transcriptome, Flavonoids, Molecular Sequence Annotation, Microsatellite Repeats genetics, Phyllanthus emblica genetics, Plants, Medicinal genetics
- Abstract
Phyllanthus emblica (Aonla, Indian Gooseberry) is known to have various medicinal properties, but studies to understand its genetic structure are limited. Among the various secondary metabolites, ascorbic acid, flavonoids, terpenoids, phenols and tannins possess great potential for its pharmacological applications. Keeping this consideration, we assembled the transcriptome using the Illumina RNASeq500 platform, generating 39,933,248 high-quality paired-end reads assembled into 1,26,606 transcripts. A total of 87,771 unigenes were recovered after isoforms and unambiguous sequences deletion. Functional annotation of 43,377 coding sequences against the NCBI non-redundant (Nr) database search using BlastX yielded 38,692 sequences containing blast hits and found 4685 coding sequences to be unique. The transcript showed maximum similarity to Hevea brasilensis (16%), followed by to Jatropha curcas (12%). Considering key genes involved in the biosynthesis of flavonoids and various classes of terpenoid compounds, thirty EST-SSR primer sequences were designed based on transcriptomic data. Of which, 12 were found to be highly polymorphic with an average of 86.38%. The average value for marker index (MI), effective multiplicity ratio (EMR), resolution power (Rp) and polymorphic information content (PIC) was 7.20, 8.34, 8.64 and 0.80, respectively. Thus, from this study, we developed newly EST-SSRs linked to important genes involved in the secondary metabolites biosynthesis that will be serving as an invaluable genetic resource for crop improvement including the selection of elite genotypes in P. emblica and its closely related Phyllanthaceae species., (© 2023. Springer Nature Limited.)
- Published
- 2023
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- View/download PDF
6. Preparation and characterization analysis of biofuel derived through seed extracts of Ricinus communis (castor oil plant).
- Author
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Abel S, Jule LT, Gudata L, Nagaraj N, Shanmugam R, Dwarampudi LP, Stalin B, and Ramaswamy K
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- Carbon Monoxide analysis, Gasoline, Nitric Oxide, Nitrogen Oxides analysis, Plant Extracts, Plant Oils, Ricinus, Biofuels analysis, Vehicle Emissions analysis
- Abstract
The current study assesses the prospect of using R. Communis seed oil as a substitute fuel for diesel engines. Biodiesel is prepared from the R. Communis plant seed oil by a single-step base catalytic transesterification procedure. The investigation deals with the Physico-chemical characteristics of R. Communis biodiesel and has been associated with the base diesel. It has been perceived that the characteristics of biodiesel are well-matched with the base diesel under the ASTM D6751 limits correspondingly. R. Communis biodiesel is blended in different proportions with base diesel such as D10, D20, D30, D40, D50 and D100 and is tested in a Kirloskar TV1 single-cylinder, 4 blows DI engine under altered loading conditions. Outcomes demonstrate that BTE and BSFC for D10 as well as D20 are similar to base diesel. BSFC indicates that the precise BSFC of base diesel, D10, D20, D30, D40 and D50 was 0.87, 1.70, 2.60, 3.0, 3.4, and 3.5 kg/kW-hr, respectively. The extreme BTE at full load condition for base diesel, D10, D20, D30, D40, D50 and D100 are 28.2%, 28.1%, 27.9%, 25.5%, 24.1%, and 23.6% , respectively. In the case of engine emissions, R. Communis biodiesel blends provided an average decrease in hydrocarbon (HC), Carbon-monoxide (CO) and carbon dioxide (CO2) associated with base diesel. Nevertheless, R. Communis biodiesel blends discharged high stages of nitrogen oxide (NOx) compares to base diesel. Base diesel, D10, D20, D30, D40, D50, and D100 had UBHC emissions of 45 ppm, 40 ppm, 44 ppm, 46 ppm, 41 ppm, and 43 ppm, respectively. The reduction in CO emissions for D10, D20, D30, D40, D50 and D100 are 0.13%, 0.14%, 0.17%, 0.18% and 0.21% respectively. The dissimilarity in NOx attentiveness within brake powers for D10, D20, D30, D40, and D50 and base diesel are 50-ppm, 100 ppm, 150 ppm, 250 ppm, 350 ppm, and 500 ppm, respectively. The dissimilarity of CO
2 emanation with reverence to break powers for the base-diesel, D10, D20, D30, D40, D50, and D100 are 4.8%, 4.9%, 4.8%, 4.56%, 4.9% and 5.1%, respectively. The present research provides a way for renewable petrol blends to substitute diesel for powering diesel engines in that way dropping the reliance on fossil fuels., (© 2022. The Author(s).)- Published
- 2022
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7. An inhibitor of RORγ for chronic pulmonary obstructive disease treatment.
- Author
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Desai H, Marathe M, Potdar V, Tiwari P, Joshi A, Kadam SR, Joshi AR, Kulkarni A, Bhosale V, Hadambar A, Lodhiya B, Udupa V, Behera D, Chaudhari SS, Das S, Bajpai M, Gowda N, and Iyer PS
- Subjects
- Animals, Dogs, Humans, Interleukin-17 metabolism, Lung metabolism, Mice, Nuclear Receptor Subfamily 1, Group F, Member 3 metabolism, Th17 Cells, Airway Obstruction metabolism, Pulmonary Disease, Chronic Obstructive metabolism, Pulmonary Emphysema metabolism
- Abstract
The role of RORγ as a transcription factor for Th17 cell differentiation and thereby regulation of IL-17 levels is well known. Increased RORγ expression along with IL-17A levels was observed in animal models, immune cells and BAL fluid of COPD patients. Increased IL-17A levels in severe COPD patients are positively correlated with decreased lung functions and increased severity symptoms and emphysema, supporting an urgency to develop novel therapies modulating IL-17 or RORγ for COPD treatment. We identified a potent RORγ inhibitor, PCCR-1 using hit to lead identification followed by extensive lead optimization by structure-activity relationship. PCCR-1 resulted in RORγ inhibition with a high degree of specificity in a biochemical assay, with > 300-fold selectivity over other isoforms of ROR. Our data suggest promising potency for IL-17A inhibition in human and canine PBMCs and mouse splenocytes with no significant impact on Th1 and Th2 cytokines. In vivo, PCCR-1 exhibited significant efficacy in the acute CS model with dose-dependent inhibition of the PD biomarkers that correlated well with the drug concentration in lung and BAL fluid, demonstrating an acceptable safety profile. This inhibitor effectively inhibited IL-17A release in whole blood and BALf samples from COPD patients. Overall, we identified a selective inhibitor of RORγ to pursue further development of novel scaffolds for COPD treatment., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
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8. Asymmetric dimethylarginine (ADMA) accelerates renal cell fibrosis under high glucose condition through NOX4/ROS/ERK signaling pathway.
- Author
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Jayachandran I, Sundararajan S, Venkatesan S, Paadukaana S, Balasubramanyam M, Mohan V, and Manickam N
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- Animals, Arginine adverse effects, Cell Line, Cell Movement drug effects, Cell Proliferation drug effects, Cells, Cultured, Fibroblasts cytology, Fibroblasts metabolism, Fibroblasts pathology, Fibrosis, Kidney cytology, Kidney metabolism, MAP Kinase Signaling System drug effects, Mesangial Cells cytology, Mesangial Cells metabolism, Mesangial Cells pathology, Models, Biological, Rats, Reactive Oxygen Species metabolism, Arginine analogs & derivatives, Diabetic Retinopathy metabolism, Glucose adverse effects, Kidney pathology, NADPH Oxidase 4 metabolism
- Abstract
We previously reported that the circulatory level of Asymmetric dimethylarginine (ADMA), an endogenous competitive inhibitor of nitric oxide synthase, was increased in diabetic kidney disease patients. However, the mechanism and the role of ADMA in diabetic kidney injury remain unclear. Hence, our principal aim is to investigate the causal role of ADMA in the progression of renal cell fibrosis under high glucose (HG) treatment and to delineate its signaling alterations in kidney cell injury. High Glucose/ADMA significantly increased fibrotic events including cell migration, invasion and proliferation along with fibrotic markers in the renal cells; whereas ADMA inhibition reversed the renal cell fibrosis. To delineate the central role of ADMA induced fibrotic signaling pathway and its downstream signaling, we analysed the expression levels of fibrotic markers, NOX4, ROS and ERK activity by using specific inhibitors and genetic manipulation techniques. ADMA stimulated the ROS generation along with a significant increase in NOX4 and ERK activity. Further, we observed that ADMA activated NOX-4 and ERK are involved in the extracellular matrix proteins accumulation. Also, we observed that ADMA induced ERK1/2 phosphorylation was decreased after NOX4 silencing. Our study mechanistically demonstrates that ADMA is involved in the progression of kidney cell injury under high glucose condition by targeting coordinated complex mechanisms involving the NOX4- ROS-ERK pathway.
- Published
- 2020
- Full Text
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9. Plausible diagnostic value of urinary isomeric dimethylarginine ratio for diabetic nephropathy.
- Author
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Parmar D, Bhattacharya N, Kannan S, Vadivel S, Pandey GK, Ghanate A, Ragi NC, Prabu P, Pramodkumar TA, Manickam N, Mohan V, Sripadi P, Kuppan G, and Panchagnula V
- Subjects
- Adult, Aged, Albuminuria etiology, Albuminuria urine, Arginine urine, Chromatography, High Pressure Liquid, Cross-Sectional Studies, Diabetes Mellitus, Type 2 urine, Diabetic Nephropathies etiology, Diabetic Nephropathies urine, Feasibility Studies, Female, Humans, Male, Middle Aged, Predictive Value of Tests, ROC Curve, Tandem Mass Spectrometry, Albuminuria diagnosis, Arginine analogs & derivatives, Diabetes Mellitus, Type 2 complications, Diabetic Nephropathies diagnosis
- Abstract
Altered circulatory asymmetric and symmetric dimethylarginines have been independently reported in patients with end-stage renal failure suggesting their potential role as mediators and early biomarkers of nephropathy. These alterations can also be reflected in urine. Herein, we aimed to evaluate urinary asymmetric to symmetric dimethylarginine ratio (ASR) for early prediction of diabetic nephropathy (DN). In this cross-sectional study, individuals with impaired glucose tolerance (IGT), newly diagnosed diabetes (NDD), diabetic microalbuminuria (MIC), macroalbuminuria (MAC), and normal glucose tolerance (NGT) were recruited from Dr. Mohans' Diabetes Specialties centre, India. Urinary ASR was measured using a validated high-throughput MALDI-MS/MS method. Significantly lower ASR was observed in MIC (0.909) and MAC (0.741) in comparison to the NGT and NDD groups. On regression models, ASR was associated with MIC [OR: 0.256; 95% CI: 0.158-0.491] and MAC [OR 0.146; 95% CI: 0.071-0.292] controlled for all the available confounding factors. ROC analysis revealed ASR cut-point of 0.95 had C-statistic of 0.691 (95% CI: 0.627-0.755) to discriminate MIC from NDD with 72% sensitivity. Whereas, an ASR cut-point of 0.82 had C-statistic of 0.846 (95% CI: 0.800 - 0.893) had 91% sensitivity for identifying MAC. Our results suggest ASR as a potential early diagnostic biomarker for DN among the Asian Indians.
- Published
- 2020
- Full Text
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10. A Facile Approach to Fabricate Dual Purpose Hybrid Materials for Tissue Engineering and Water Remediation.
- Author
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Kalirajan C, Hameed P, Subbiah N, and Palanisamy T
- Abstract
Creating hybrid materials with multifunctionality and robust mechanical stability from natural resources is a challenging proposition in materials science. Here, we report the scalable synthesis of hybrid collagen scaffolds using collagen extracted from leather industry wastes and sago starch derived from agro-industry. The hybrid scaffolds were incorporated with TiO
2 nanoparticles and cross-linked with oxidized sago starch. The biocompatibility, thermal stability and antimicrobial property of hybrid scaffold enabled its application in burn wound healing demonstrated through albino rat models. The highly porous hybrid scaffolds are shown to be super-compressible, which is typically forbidden in materials of biological origin. We demonstrate that the hybrid scaffolds concurrently display both adsorption and absorption behavior in the removal of oil and dye molecules, respectively from contaminated water. This study paves the way for the development of novel multifunctional and shape recoverable hybrid materials specifically from renewable resources.- Published
- 2019
- Full Text
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