5 results on '"Qing Jie Xia"'
Search Results
2. Predictive potentials of glycosylation-related genes in glioma prognosis and their correlation with immune infiltration
- Author
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Yi-Fei Sun, Lan-Chun Zhang, Rui-Ze Niu, Li Chen, Qing-Jie Xia, Liu-Lin Xiong, and Ting-Hua Wang
- Subjects
Medicine ,Science - Abstract
Abstract Glycosylation is currently considered to be an important hallmark of cancer. However, the characterization of glycosylation-related gene sets has not been comprehensively analyzed in glioma, and the relationship between glycosylation-related genes and glioma prognosis has not been elucidated. Here, we firstly found that the glycosylation-related differentially expressed genes in glioma patients were engaged in biological functions related to glioma progression revealed by enrichment analysis. Then seven glycosylation genes (BGN, C1GALT1C1L, GALNT13, SDC1, SERPINA1, SPTBN5 and TUBA1C) associated with glioma prognosis were screened out by consensus clustering, principal component analysis, Lasso regression, and univariate and multivariate Cox regression analysis using the TCGA-GTEx database. A glycosylation-related prognostic signature was developed and validated using CGGA database data with significantly accurate prediction on glioma prognosis, which showed better capacity to predict the prognosis of glioma patients than clinicopathological factors do. GSEA enrichment analysis based on the risk score further revealed that patients in the high-risk group were involved in immune-related pathways such as cytokine signaling, inflammatory responses, and immune regulation, as well as glycan synthesis and metabolic function. Immuno-correlation analysis revealed that a variety of immune cell infiltrations, such as Macrophage, activated dendritic cell, Regulatory T cell (Treg), and Natural killer cell, were increased in the high-risk group. Moreover, functional experiments were performed to evaluate the roles of risk genes in the cell viability and cell number of glioma U87 and U251 cells, which demonstrated that silencing BGN, SDC1, SERPINA1, TUBA1C, C1GALT1C1L and SPTBN5 could inhibit the growth and viability of glioma cells. These findings strengthened the prognostic potentials of our predictive signature in glioma. In conclusion, this prognostic model composed of 7 glycosylation-related genes distinguishes well the high-risk glioma patients, which might potentially serve as caner biomarkers for disease diagnosis and treatment.
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- 2024
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3. MicroRNA-127 targeting of mitoNEET inhibits neurite outgrowth, induces cell apoptosis and contributes to physiological dysfunction after spinal cord transection
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Fei Liu, Qin-qin He, You-Cui Wang, Qing-Jie Xia, Liu-Lin Xiong, Fei-Fei Shang, Xiang He, Ting-Hua Wang, Chao-Zhi Luo, Jia Liu, Guo-Ying Feng, and De-Lu Qiu
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0301 basic medicine ,Gene knockdown ,Multidisciplinary ,Neurite ,biology ,medicine.disease ,Neuroregeneration ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Downregulation and upregulation ,Apoptosis ,microRNA ,Immunology ,medicine ,biology.protein ,Gap-43 protein ,Spinal cord injury ,030217 neurology & neurosurgery - Abstract
Neuroregeneration and apoptosis are two important pathophysiologic changes after spinal cord injury (SCI), but their underlying mechanisms remain unclear. MicroRNAs (miRNAs) play a crucial role in the regulation of neuroregeneration and neuronal apoptosis, research areas that have been greatly expanded in recent years. Here, using miRNA arrays to profile miRNA transcriptomes, we demonstrated that miR-127-3p was significantly down-regulated after spinal cord transection (SCT). Then, bioinformatics analyses and experimental detection showed that miR-127-3p exhibited specific effects on the regulation of neurite outgrowth and the induction of neuronal apoptosis by regulating the expression of the mitochondrial membrane protein mitoNEET. Moreover, knockdown of MitoNEET leaded to neuronal loss and apoptosis in primary cultured spinal neurons. This study therefore revealed that miR-127-3p, which targets mitoNEET, plays a vital role in regulating neurite outgrowth and neuronal apoptosis after SCT. Thus, modificatioin of the mitoNEET expression, such as mitoNEET activition may provide a new strategy for the treatment of SCI in preclinical trials.
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- 2016
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4. Mechanisms of PDGF siRNA-mediated inhibition of bone cancer pain in the spinal cord
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Jia Liu, Ping Dai, Johnw McDonald, Su Liu, Yun Xia Zuo, Wei Liu, Jin Liu, Visar Belegu, Yang Xu, Mu He, Chao Zhi Luo, Xue Zhou, Fei Liu, Ting Hua Wang, Wei Wang, Ran Liu, Qing Jie Xia, and Fei Fei Shang
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0301 basic medicine ,MAPK/ERK pathway ,Small interfering RNA ,medicine.medical_treatment ,Down-Regulation ,Bone Neoplasms ,Article ,Rats, Sprague-Dawley ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Animals ,Simplexvirus ,Receptors, Platelet-Derived Growth Factor ,RNA, Small Interfering ,Protein kinase B ,Platelet-Derived Growth Factor ,Multidisciplinary ,Morphine ,Tibia ,biology ,business.industry ,Bone cancer ,Growth factor ,Cancer Pain ,medicine.disease ,Rats ,030104 developmental biology ,medicine.anatomical_structure ,Spinal Cord ,Hyperalgesia ,Astrocytes ,Anesthesia ,Cancer research ,biology.protein ,Female ,medicine.symptom ,business ,030217 neurology & neurosurgery ,Platelet-derived growth factor receptor ,Signal Transduction ,Astrocyte - Abstract
Patients with tumors that metastasize to bone frequently suffer from debilitating pain, and effective therapies for treating bone cancer are lacking. This study employed a novel strategy in which herpes simplex virus (HSV) carrying a small interfering RNA (siRNA) targeting platelet-derived growth factor (PDGF) was used to alleviate bone cancer pain. HSV carrying PDGF siRNA was established and intrathecally injected into the cavum subarachnoidale of animals suffering from bone cancer pain and animals in the negative group. Sensory function was assessed by measuring thermal and mechanical hyperalgesia. The mechanism by which PDGF regulates pain was also investigated by comparing the differential expression of pPDGFRα/β and phosphorylated ERK and AKT. Thermal and mechanical hyperalgesia developed in the rats with bone cancer pain, and these effects were accompanied by bone destruction in the tibia. Intrathecal injection of PDGF siRNA and morphine reversed thermal and mechanical hyperalgesia in rats with bone cancer pain. In addition, we observed attenuated astrocyte hypertrophy, down-regulated pPDGFRα/β levels, reduced levels of the neurochemical SP, a reduction in CGRP fibers and changes in pERK/ERK and pAKT/AKT ratios. These results demonstrate that PDGF siRNA can effectively treat pain induced by bone cancer by blocking the AKT-ERK signaling pathway.
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- 2016
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5. miR-434-3p and DNA hypomethylation co-regulate eIF5A1 to increase AChRs and to improve plasticity in SCT rat skeletal muscle
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Ling You, Fei-Fei Shang, Mu He, Jin-Liang Yang, Ting-Hua Wang, Lei Xia, Qing-Jie Xia, Wei Liu, and Bao-Jiang Qian
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0301 basic medicine ,Biology ,Motor Activity ,Receptors, Nicotinic ,Article ,Small hairpin RNA ,03 medical and health sciences ,RNA interference ,Peptide Initiation Factors ,microRNA ,medicine ,Animals ,Muscle, Skeletal ,3' Untranslated Regions ,Spinal Cord Injuries ,Regulation of gene expression ,Gene knockdown ,Multidisciplinary ,Binding Sites ,Gene Expression Profiling ,Skeletal muscle ,Computational Biology ,RNA-Binding Proteins ,Molecular Sequence Annotation ,Anatomy ,DNA Methylation ,Cell biology ,Rats ,Gene expression profiling ,Disease Models, Animal ,MicroRNAs ,030104 developmental biology ,medicine.anatomical_structure ,DNA demethylation ,Gene Ontology ,Gene Expression Regulation ,RNA Interference ,Transcriptome - Abstract
Acetylcholine receptors (AChRs) serve as connections between motor neurons and skeletal muscle and are essential for recovery from spinal cord transection (SCT). Recently, microRNAs have emerged as important potential biotherapeutics for several diseases; however, whether miRNAs operate in the modulation of AChRs remains unknown. We found increased AChRs numbers and function scores in rats with SCT; these increases were reduced following the injection of a eukaryotic translation initiation factor 5A1 (eIF5A1) shRNA lentivirus into the hindlimb muscle. Then, high-throughput screening for microRNAs targeting eIF5A1 was performed, and miR-434-3p was found to be robustly depleted in SCT rat skeletal muscle. Furthermore, a highly conserved miR-434-3p binding site was identified within the mRNA encoding eIF5A1 through bioinformatics analysis and dual-luciferase assay. Overexpression or knockdown of miR-434-3p in vivo demonstrated it was a negative post-transcriptional regulator of eIF5A1 expression and influenced AChRs expression. The microarray-enriched Gene Ontology (GO) terms regulated by miR-434-3p were muscle development terms. Using a lentivirus, one functional gene (map2k6) was confirmed to have a similar function to that of miR-434-3p in GO terms. Finally, HRM and MeDIP-PCR analyses revealed that DNA demethylation also up-regulated eIF5A1 after SCT. Consequently, miR-434-3p/eIF5A1 in muscle is a promising potential biotherapy for SCI repair.
- Published
- 2016
- Full Text
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