26 results on '"Stewart, C. A."'
Search Results
2. Relative muscle indices and healthy reference values for sarcopenia assessment using T10 through L5 computed tomography skeletal muscle area
- Author
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Brian A. Derstine, Sven A. Holcombe, Nicholas C. Wang, Brian E. Ross, June A. Sullivan, Stewart C. Wang, and Grace L. Su
- Subjects
Sarcopenia ,Skeletal muscle ,Morphomics ,Medicine ,Science - Abstract
Abstract Sarcopenia is the age-related loss of skeletal muscle mass and function. Computed tomography (CT) assessments of sarcopenia utilize measurements of skeletal muscle cross-sectional area (SMA), radiation attenuation (SMRA), and intramuscular adipose tissue (IMAT). Unadjusted SMA is strongly correlated with both height and body mass index (BMI); therefore, SMA must be adjusted for body size to assess sarcopenic low muscle mass fairly in individuals of different heights and BMI. SMA/height (rather than $$SMA/height^2$$ S M A / h e i g h t 2 ) provides optimal height adjustment, and vertebra-specific relative muscle index (RMI) equations optimally adjust for both height and BMI. Since L3 measurement is not available in all CT scans, sarcopenic low muscle mass may be assessed using other levels. Both a mid-vertebral slice and an inferior slice have been used to define ‘L3 SMA’, but the effect of vertebral slice location on SMA measurements is unexplored. Healthy reference values for skeletal muscle measures at mid- and inferior vertebra slices between T10 and L5, have not yet been reported. We extracted T10 through L5 SMA, SMRA, and IMAT at a mid-vertebral and inferior slice using non-contrast-enhanced CT scans from healthy, adult kidney donor candidates between age 18 and 73. We compared paired differences in SMA between the mid-vertebral slice versus the inferior slice. We calculated the skeletal muscle gauge as $$SMG_{HT}=SMRA*SMI_{HT}$$ S M G HT = S M R A ∗ S M I HT . We used allometric analysis to find the optimal height scaling power for SMA. To enable comparisons with other published reference cohorts, we computed two height-adjusted measures; $$SMI_{HT}=SMA/height$$ S M I HT = S M A / h e i g h t (optimal) and $$SMI_{HT2}=SMA/height^2$$ S M I H T 2 = S M A / h e i g h t 2 (traditional). Using the young, healthy reference cohort, we utilized multiple linear regression to calculate relative muscle index z-scores ( $$RMI_{HT}$$ R M I HT , $$RMI_{HT2}$$ R M I H T 2 ), which adjust for both height and BMI, at each vertebra level. We assessed Pearson correlations of each muscle area measure versus age, height, weight, and BMI separately by sex and vertebra number. We assessed the differences in means between age 18–40 versus 20–40 as the healthy, young adult reference group. We reported means, standard deviations, and sarcopenia cutpoints (mean-2SD and 5th percentile) by sex and age group for all measures. Sex-specific allometric analysis showed that height to the power of one was the optimal adjustment for SMA in both men and women at all vertebra levels. Differences between mid-vertebra and inferior slice SMA were statistically significant at each vertebra level, except for T10 in men. $$SMI_{HT}$$ S M I HT was uncorrelated with height, whereas $$SMI_{HT2}$$ S M I H T 2 was negatively correlated with height at all vertebra levels. Both $$SMI_{HT}$$ S M I HT and $$SMI_{HT2}$$ S M I H T 2 were positively correlated with BMI at all vertebra levels. $$RMI_{HT}$$ R M I HT was uncorrelated with BMI, weight, and height (minimal positive correlation in women at $$\hbox {L3}_{inf}$$ L3 inf , $$\hbox {L4}_{mid}$$ L4 mid , and $$\hbox {L5}_{inf}$$ L5 inf ) whereas $$RMI_{HT2}$$ R M I H T 2 was uncorrelated with BMI, but negatively correlated with height and weight at all levels. There were no significant differences in SMA between 18–40 versus 20–40 age groups. Healthy reference values and sarcopenic cutpoints are reported stratified by sex, vertebra level, and age group for each measure. Height to the power of one (SMA/height) is the optimal height adjustment factor for SMA at all levels between $$\hbox {T10}_{mid}$$ T10 mid through $$\hbox {L5}_{inf}$$ L5 inf . The use of $$SMA/height^2$$ S M A / h e i g h t 2 should be discontinued as it retains a significant negative correlation with height and is therefore biased towards identifying sarcopenia in taller individuals. Measurement of SMA at a mid-vertebral slice is significantly different from measurement of SMA at an inferior aspect slice. Reference values should be used for the appropriate slice. We report sarcopenic healthy reference values for skeletal muscle measures at the mid-vertebral and inferior aspect slice for T10 through L5 vertebra levels. Relative muscle index (RMI) equations developed here minimize correlation with both height and BMI, producing unbiased assessments of relative muscle mass across the full range of body sizes. We recommend the use of these RMI equations in other cohorts.
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- 2024
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3. Foot plantar pressure and centre of pressure trajectory differ between straight and turning steps in infants
- Author
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Price, Carina, Montagnani, Eleonora, Nester, Christopher, and Morrison, Stewart C.
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- 2023
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4. Reference distributions of aortic calcification and association with Framingham risk score
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Steven R. Horbal, Brian A. Derstine, Edward Brown, Grace L. Su, Stewart C. Wang, and Sven A. Holcombe
- Subjects
Medicine ,Science - Abstract
Abstract Evidence supporting aortic calcification as a leverageable cardiovascular risk factor is rapidly growing. Given aortic calcification’s potential as a clinical correlate, we assessed granular vertebral-indexed calcification measurements of the abdominal aorta in a well curated reference population. We evaluated the relationship of aortic calcification measurements with Framingham risk scores. After exclusion, 4073 participants from the Reference Analytic Morphomic Population with varying vertebral levels were included. The percent of the aortic wall calcified was used to assess calcification burden at the L1–L4 levels. Descriptive statistics of participants, sex-specific vertebral indexed calcification measurements, relational plots, and relevant associations are reported. Mean aortic attenuation was higher in female than male participants. Overall, mean aortic calcium was higher with reference to inferior abdominal aortic measurements and demonstrated significant differences across all abdominal levels [L3 Area (mm $$^2$$ 2 ): Females 6.34 (sd 16.60), Males 6.23 (sd 17.21); L3 Volume (mm $$^3$$ 3 ): Females 178.90 (sd 474.19), Males 195.80 (sd 547.36); Wall Calcification (%): Females (L4) 6.97 (sd 16.03), Males (L3) 5.46 (13.80)]. Participants with elevated calcification had significantly higher Framingham risk scores compared to participants with normal calcification scores. Opportunistically measuring aortic calcification may inform further cardiovascular risk assessment and enhance cardiovascular event surveillance efforts.
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- 2023
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5. Foot plantar pressure and centre of pressure trajectory differ between straight and turning steps in infants
- Author
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Carina Price, Eleonora Montagnani, Christopher Nester, and Stewart C. Morrison
- Subjects
Medicine ,Science - Abstract
Abstract Plantar pressure has been used to understand loading on infant feet as gait develops. Previous literature focused on straight walking, despite turning accounting for 25% of infant self-directed steps. We aimed to compare centre of pressure and plantar pressure in walking steps in different directions in infants. Twenty-five infants who were walking confidently participated in the study (aged 449 ± 71 days, 96 ± 25 days after first steps). Plantar pressure and video were recorded whilst five steps per infant were combined for three step types: straight, turning inwards and outwards. Centre of pressure trajectory components were compared for path length and velocity. Pedobarographic Statistical Parametric Mapping explored differences in peak plantar pressure for the three step types. Significant differences were identified primarily in the forefoot with higher peak pressures in straight steps. Centre of pressure path was longer in the medial–lateral direction during turning (outward 4.6 ± 2.3, inward 6.8 ± 6.1, straight 3.5 ± 1.2 cm, p
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- 2023
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6. Healthy US population reference values for CT visceral fat measurements and the impact of IV contrast, HU range, and spinal levels
- Author
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Brian A. Derstine, Sven A Holcombe, Brian E Ross, Nicholas C Wang, Stewart C Wang, and Grace L Su
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Medicine ,Science - Abstract
Abstract Measurements of visceral adipose tissue cross-sectional area and radiation attenuation from computed tomography (CT) scans provide useful information about risk and mortality. However, scan protocols vary, encompassing differing vertebra levels and utilizing differing phases of contrast enhancement. Furthermore, fat measurements have been extracted from CT using different Hounsfield Unit (HU) ranges. To our knowledge, there have been no large studies of healthy cohorts that reported reference values for visceral fat area and radiation attenuation at multiple vertebra levels, for different contrast phases, and using different fat HU ranges. Two-phase CT scans from 1,677 healthy, adult kidney donors (age 18–65) between 1999 and 2017, previously studied to determine healthy reference values for skeletal muscle measures, were utilized. Visceral adipose tissue cross-sectional area (VFA) and radiation attenuation (VFRA) measures were quantified using axial slices at T10 through L4 vertebra levels. T-tests were used to compare males and females, while paired t-tests were conducted to determine the effect (magnitude and direction) of (a) contrast enhancement and (b) different fat HU ranges on each fat measure at each vertebra level. We report the means, standard deviations, and effect sizes of contrast enhancement and fat HU range. Male and female VFA and VFRA were significantly different at all vertebra levels in both contrast and non-contrast scans. Peak VFA was observed at L4 in females and L2 in males, while peak VFRA was observed at L1 in both females and males. In general, non-contrast scans showed significantly greater VFA and VFRA compared to contrast scans. The average paired difference due to contrast ranged from 1.6 to − 8% (VFA) and 3.2 to − 3.0% (VFRA) of the non-contrast value. HU range showed much greater differences in VFA and VFRA than contrast. The average paired differences due to HU range ranged from − 5.3 to 22.2% (VFA) and − 5.9 to 13.6% (VFRA) in non-contrast scans, and − 4.4 to 20.2% (VFA) and − 4.1 to 12.6% (VFRA) in contrast scans. The − 190 to − 30 HU range showed the largest differences in both VFA (10.8% to 22.2%) and VFRA (7.6% to 13.6%) compared to the reference range (− 205 to − 51 HU). Incidentally, we found that differences in lung inflation result in very large differences in visceral fat measures, particularly in the thoracic region. We assessed the independent effects of contrast presence and fat HU ranges on visceral fat cross-sectional area and mean radiation attenuation, finding significant differences particularly between different fat HU ranges. These results demonstrate that CT measurements of visceral fat area and radiation attenuation are strongly dependent upon contrast presence, fat HU range, sex, breath cycle, and vertebra level of measurement. We quantified contrast and non-contrast reference values separately for males and females, using different fat HU ranges, for lumbar and thoracic CT visceral fat measures at multiple vertebra levels in a healthy adult US population.
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- 2022
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7. Healthy US population reference values for CT visceral fat measurements and the impact of IV contrast, HU range, and spinal levels
- Author
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Derstine, Brian A., Holcombe, Sven A, Ross, Brian E, Wang, Nicholas C, Wang, Stewart C, and Su, Grace L
- Published
- 2022
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8. Optimal body size adjustment of L3 CT skeletal muscle area for sarcopenia assessment
- Author
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Brian A. Derstine, Sven A. Holcombe, Brian E. Ross, Nicholas C. Wang, Grace L. Su, and Stewart C. Wang
- Subjects
Medicine ,Science - Abstract
Abstract Measurements of skeletal muscle cross-sectional area (SMA) at the level of the third lumbar (L3) vertebra derived from clinical computed tomography (CT) scans are commonly used in assessments of sarcopenia, the loss of skeletal muscle mass and function associated with aging. As SMA is correlated with height and Body Mass Index (BMI), body size adjustment is necessary to fairly assess sarcopenic low muscle mass in individuals of different height and BMI. The skeletal muscle index, a widely used measure, adjusts for height as $$(SMA/height^2)$$ ( S M A / h e i g h t 2 ) but uses no BMI adjustment. There is no agreed upon standard for body size adjustment. We extracted L3 SMA using non-contrast-enhanced CT scans from healthy adults, split into ‘Under-40’ and ‘Over-40’ cohorts. Sex-specific allometric analysis showed that height to the power of one was the optimal integer coefficient for height adjusted SMA in both males and females. We computed two height-adjusted measures $$SMA_{HT}=SMA/height$$ S M A HT = S M A / h e i g h t and $$SMA_{HT2}=SMA/height^2$$ S M A H T 2 = S M A / h e i g h t 2 , comparing their Pearson correlations versus age, height, weight, and BMI separately by sex and cohort. Finally, in the ‘Under-40’ cohort, we used linear regression to convert each height-adjusted measure into a z-score ( $$z(SMA_{HT})$$ z ( S M A HT ) , $$z(SMA_{HT2})$$ z ( S M A H T 2 ) ) adjusted for BMI. $$SMA_{HT}$$ S M A HT was less correlated with height in both males and females ( $$r=0.005$$ r = 0.005 , $$p=0.91$$ p = 0.91 and $$r=0.1$$ r = 0.1 , $$p=0.01$$ p = 0.01 ) than $$SMA_{HT2}$$ S M A H T 2 ( $$r=-\,0.30$$ r = - 0.30 and $$r=-\,0.21$$ r = - 0.21 , $$p
- Published
- 2021
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9. Optimal body size adjustment of L3 CT skeletal muscle area for sarcopenia assessment
- Author
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Derstine, Brian A., Holcombe, Sven A., Ross, Brian E., Wang, Nicholas C., Su, Grace L., and Wang, Stewart C.
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- 2021
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10. Neuromuscular fatigue and recovery after strenuous exercise depends on skeletal muscle size and stem cell characteristics
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Baumert, Philipp, Temple, S., Stanley, J. M., Cocks, M., Strauss, J. A., Shepherd, S. O., Drust, B., Lake, M. J., Stewart, C. E., and Erskine, R. M.
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- 2021
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11. Skeletal muscle cutoff values for sarcopenia diagnosis using T10 to L5 measurements in a healthy US population
- Author
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Brian A. Derstine, Sven A. Holcombe, Brian E. Ross, Nicholas C. Wang, Grace L. Su, and Stewart C. Wang
- Subjects
Medicine ,Science - Abstract
Abstract Measurements of skeletal muscle cross-sectional area, index, and radiation attenuation utilizing clinical computed tomography (CT) scans are used in assessments of sarcopenia, the loss of skeletal muscle mass and function associated with aging. To classify individuals as sarcopenic, sex-specific cutoffs for ‘low’ values are used. Conventionally, cutoffs for skeletal muscle measurements at the level of the third lumbar (L3) vertebra are used, however L3 is not included in several clinical CT protocols. Non-contrast-enhanced CT scans from healthy kidney donor candidates (age 18–40) at Michigan Medicine were utilized. Skeletal muscle area (SMA), index (SMI), and mean attenuation (SMRA) were measured at each vertebral level between the tenth thoracic (T10) and the fifth lumbar (L5) vertebra. Sex-specific means, standard deviations (s.d.), and sarcopenia cutoffs (mean-2 s.d.) at each vertebral level were computed. Associations between vertebral levels were assessed using Pearson correlations and Tukey’s difference test. Classification agreement between different vertebral level cutoffs was assessed using overall accuracy, specificity, and sensitivity. SMA, SMI, and SMRA L3 cutoffs for sarcopenia were 92.2 cm2, 34.4 cm2/m2, and 34.3 HU in females, and 144.3 cm2, 45.4 cm2/m2, and 38.5 HU in males, consistent with previously reported cutoffs. Correlations between all level pairs were statistically significant and high, ranging from 0.65 to 0.95 (SMA), 0.64 to 0.95 (SMI), and 0.63 to 0.95 (SMRA). SMA peaks at L3, supporting its use as the primary site for CT sarcopenia measurements. However, when L3 is not available alternative levels (in order of preference) are L2, L4, L5, L1, T12, T11, and T10. Healthy reference values reported here enable sarcopenia assessment and sex-specific standardization of SMA, SMI, and SMRA in clinical populations, including those whose CT protocols do not include L3.
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- 2018
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12. DNA methylation across the genome in aged human skeletal muscle tissue and muscle-derived cells: the role of HOX genes and physical activity
- Author
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Turner, D. C., Gorski, P. P., Maasar, M. F., Seaborne, R. A., Baumert, P., Brown, A. D., Kitchen, M. O., Erskine, R. M., Dos-Remedios, I., Voisin, S., Eynon, N., Sultanov, R. I., Borisov, O. V., Larin, A. K., Semenova, E. A., Popov, D. V., Generozov, E. V., Stewart, C. E., Drust, B., Owens, D. J., Ahmetov, I. I., and Sharples, A. P.
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- 2020
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13. Platypus predation has differential effects on aquatic invertebrates in contrasting stream and lake ecosystems
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McLachlan-Troup, Tanya A., Nicol, Stewart C., and Dickman, Christopher R.
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- 2020
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14. The Tsunami Threat to Sydney Harbour, Australia: Modelling potential and historic events
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Wilson, Kaya M., Allen, Stewart C. R., and Power, Hannah E.
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- 2018
- Full Text
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15. Skeletal muscle cutoff values for sarcopenia diagnosis using T10 to L5 measurements in a healthy US population
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Derstine, Brian A., Holcombe, Sven A., Ross, Brian E., Wang, Nicholas C., Su, Grace L., and Wang, Stewart C.
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- 2018
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16. Reference distributions of aortic calcification and association with Framingham risk score.
- Author
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Horbal, Steven R., Derstine, Brian A., Brown, Edward, Su, Grace L., Wang, Stewart C., and Holcombe, Sven A.
- Subjects
CALCIFICATION ,DISEASE risk factors ,CARDIOVASCULAR diseases risk factors ,ABDOMINAL aorta ,AORTA ,THORACIC aorta - Abstract
Evidence supporting aortic calcification as a leverageable cardiovascular risk factor is rapidly growing. Given aortic calcification's potential as a clinical correlate, we assessed granular vertebral-indexed calcification measurements of the abdominal aorta in a well curated reference population. We evaluated the relationship of aortic calcification measurements with Framingham risk scores. After exclusion, 4073 participants from the Reference Analytic Morphomic Population with varying vertebral levels were included. The percent of the aortic wall calcified was used to assess calcification burden at the L1–L4 levels. Descriptive statistics of participants, sex-specific vertebral indexed calcification measurements, relational plots, and relevant associations are reported. Mean aortic attenuation was higher in female than male participants. Overall, mean aortic calcium was higher with reference to inferior abdominal aortic measurements and demonstrated significant differences across all abdominal levels [L3 Area (mm 2 ): Females 6.34 (sd 16.60), Males 6.23 (sd 17.21); L3 Volume (mm 3 ): Females 178.90 (sd 474.19), Males 195.80 (sd 547.36); Wall Calcification (%): Females (L4) 6.97 (sd 16.03), Males (L3) 5.46 (13.80)]. Participants with elevated calcification had significantly higher Framingham risk scores compared to participants with normal calcification scores. Opportunistically measuring aortic calcification may inform further cardiovascular risk assessment and enhance cardiovascular event surveillance efforts. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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17. Platypus predation has differential effects on aquatic invertebrates in contrasting stream and lake ecosystems
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Tanya A. McLachlan-Troup, Stewart C. Nicol, and Chris R. Dickman
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0106 biological sciences ,Aquatic Organisms ,Geologic Sediments ,Ecosystem ecology ,Foraging ,lcsh:Medicine ,Biology ,Models, Biological ,010603 evolutionary biology ,01 natural sciences ,Article ,Predation ,Rivers ,parasitic diseases ,Animals ,Ecosystem ,Biomass ,Platypus ,lcsh:Science ,Phylogeny ,Trophic level ,Multidisciplinary ,Ecology ,010604 marine biology & hydrobiology ,Aquatic ecosystem ,lcsh:R ,Lake ecosystem ,Detritivore ,Invertebrates ,Lakes ,Benthic zone ,Predatory Behavior ,Multivariate Analysis ,Freshwater ecology ,lcsh:Q - Abstract
Predators can have strong impacts on prey populations, with cascading effects on lower trophic levels. Although such effects are well known in aquatic ecosystems, few studies have explored the influence of predatory aquatic mammals, or whether the same predator has similar effects in contrasting systems. We investigated the effects of platypus (Monotremata: Ornithorhynchus anatinus) on its benthic invertebrate prey, and tested predictions that this voracious forager would more strongly affect invertebrates—and indirectly, epilithic algae—in a mesotrophic lake than in a dynamic stream ecosystem. Hypotheses were tested using novel manipulative experiments involving platypus-exclusion cages. Platypuses had strongly suppressive effects on invertebrate prey populations, especially detritivores and omnivores, but weaker or inconsistent effects on invertebrate taxon richness and composition. Contrary to expectation, predation effects were stronger in the stream than the lake; no effects were found on algae in either ecosystem due to weak effects of platypuses on herbivorous invertebrates. Platypuses did not cause redistribution of sediment via their foraging activities. Platypuses can clearly have both strong and subtle effects on aquatic food webs that may vary widely between ecosystems and locations, but further research is needed to replicate our experiments and understand the contextual drivers of this variation.
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- 2020
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18. Skeletal muscle cutoff values for sarcopenia diagnosis using T10 to L5 measurements in a healthy US population
- Author
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Sven A. Holcombe, Grace L. Su, Stewart C. Wang, Brian A. Derstine, Nicholas C. Wang, and Brian E. Ross
- Subjects
Adult ,Male ,Sarcopenia ,Science ,Population ,Article ,Thoracic Vertebrae ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Sex Factors ,0302 clinical medicine ,Lumbar ,Reference Values ,Humans ,Medicine ,Cutoff ,Muscle, Skeletal ,education ,education.field_of_study ,Lumbar Vertebrae ,Multidisciplinary ,business.industry ,Skeletal muscle ,SMA ,medicine.disease ,United States ,Vertebra ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Reference values ,Female ,Tomography, X-Ray Computed ,business ,Nuclear medicine - Abstract
Measurements of skeletal muscle cross-sectional area, index, and radiation attenuation utilizing clinical computed tomography (CT) scans are used in assessments of sarcopenia, the loss of skeletal muscle mass and function associated with aging. To classify individuals as sarcopenic, sex-specific cutoffs for ‘low’ values are used. Conventionally, cutoffs for skeletal muscle measurements at the level of the third lumbar (L3) vertebra are used, however L3 is not included in several clinical CT protocols. Non-contrast-enhanced CT scans from healthy kidney donor candidates (age 18–40) at Michigan Medicine were utilized. Skeletal muscle area (SMA), index (SMI), and mean attenuation (SMRA) were measured at each vertebral level between the tenth thoracic (T10) and the fifth lumbar (L5) vertebra. Sex-specific means, standard deviations (s.d.), and sarcopenia cutoffs (mean-2 s.d.) at each vertebral level were computed. Associations between vertebral levels were assessed using Pearson correlations and Tukey’s difference test. Classification agreement between different vertebral level cutoffs was assessed using overall accuracy, specificity, and sensitivity. SMA, SMI, and SMRA L3 cutoffs for sarcopenia were 92.2 cm2, 34.4 cm2/m2, and 34.3 HU in females, and 144.3 cm2, 45.4 cm2/m2, and 38.5 HU in males, consistent with previously reported cutoffs. Correlations between all level pairs were statistically significant and high, ranging from 0.65 to 0.95 (SMA), 0.64 to 0.95 (SMI), and 0.63 to 0.95 (SMRA). SMA peaks at L3, supporting its use as the primary site for CT sarcopenia measurements. However, when L3 is not available alternative levels (in order of preference) are L2, L4, L5, L1, T12, T11, and T10. Healthy reference values reported here enable sarcopenia assessment and sex-specific standardization of SMA, SMI, and SMRA in clinical populations, including those whose CT protocols do not include L3.
- Published
- 2018
19. Generation, analysis, and transformation of macro-chloroplast Potato (Solanum tuberosum) lines for chloroplast biotechnology
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Occhialini, Alessandro, primary, Pfotenhauer, Alexander C., additional, Frazier, Taylor P., additional, Li, Li, additional, Harbison, Stacee A., additional, Lail, Andrew J., additional, Mebane, Zachary, additional, Piatek, Agnieszka A., additional, Rigoulot, Stephen B., additional, Daniell, Henry, additional, Stewart, C. Neal, additional, and Lenaghan, Scott C., additional
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- 2020
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20. The Tsunami Threat to Sydney Harbour, Australia: Modelling potential and historic events
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Stewart C. R. Allen, Kaya M. Wilson, and Hannah E. Power
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geography ,River valley ,Multidisciplinary ,geography.geographical_feature_category ,010504 meteorology & atmospheric sciences ,lcsh:R ,lcsh:Medicine ,Pelagic zone ,Estuary ,010502 geochemistry & geophysics ,01 natural sciences ,Article ,Deep water ,Water level ,Current (stream) ,Oceanography ,Wave height ,Harbour ,Environmental science ,lcsh:Q ,lcsh:Science ,computer ,0105 earth and related environmental sciences ,computer.programming_language - Abstract
Tsunami modelling of potential and historic events in Australia’s Sydney Harbour quantifies the potentially damaging impacts of an earthquake generated tsunami. As a drowned river valley estuary exposed to distant source zones, these impacts are predominantly high current speeds (>2 m/s), wave amplification and rapid changes in water level. Significant land inundation only occurs for scenarios modelled with the largest waves (9.0 MW source). The degree of exposure to the open ocean and the geomorphology of locations within the Harbour determine the relative level of these impacts. Narrow, shallow channels, even those sheltered from the open ocean, create a bottleneck effect and experience the highest relative current speeds as well as elevated water levels. The largest maximum water levels (>8 m) occur in exposed, funnel-shaped bays and wave amplification is greatest at locations exposed to the open ocean: >7 times deep water wave heights for 9.0 MW source waves. Upstream attenuation rates of runup and maximum water level show a linear correlation with wave height parameters at the 100 m depth contour and may provide some predictive capabilities for potential tsunami impacts at analogous locations. In the event of a tsunami in Sydney Harbour, impacts may threaten marine traffic and infrastructure.
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- 2018
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21. Himalayan uplift shaped biomes in Miocene temperate Asia: evidence from leguminous Caragana
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Juan-Juan Xue, Stewart C. Sanderson, Xiao-Guo Xiang, Peter W. Fritsch, and Ming-Li Zhang
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0106 biological sciences ,0301 basic medicine ,Asia ,Steppe ,Biome ,Caragana ,Late Miocene ,010603 evolutionary biology ,01 natural sciences ,Article ,03 medical and health sciences ,Species Specificity ,East Asian Monsoon ,Biomass ,Multidisciplinary ,geography.geographical_feature_category ,biology ,Ecology ,Vegetation ,biology.organism_classification ,Arid ,Biological Evolution ,Phylogeography ,030104 developmental biology ,Geography ,Aridification - Abstract
Caragana, with distinctive variation in leaf and rachis characters, exhibits three centers of geographic distribution, i.e., Central Asia, the Qinghai-Tibetan Plateau (QTP), and East Asia, corresponding to distinct biomes. Because Caragana species are often ecologically dominant components of the vegetation in these regions, it is regarded as a key taxon for the study of floristic evolution in the dry regions of temperate Asia. Based on an expanded data set of taxa and gene regions from those previously generated, we employed molecular clock and biogeographical analyses to infer the evolutionary history of Caragana and link it to floristic patterns, paleovegetation, and paleoclimate. Results indicate that Caragana is of arid origin from the Junggar steppe. Diversification of crown group Caragana, dated to the early Miocene ca. 18 Ma and onwards, can be linked to the Himalayan Motion stage of QTP uplift. Diversification of the major clades in the genus corresponding to taxonomic sections and morphological variation is inferred to have been driven by the uplift, as well as Asian interior aridification and East Asian monsoon formation, in the middle to late Miocene ca. 12~6 Ma. These findings demonstrate a synchronous evolution among floristics, vegetation and climate change in arid Central Asia, cold arid alpine QTP, and mesophytic East Asia.
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- 2016
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22. Young dispersal of xerophil Nitraria lineages in intercontinental disjunctions of the Old World
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Ming-Li Zhang, Kamshat Temirbayeva, Stewart C. Sanderson, and Xi Chen
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Multidisciplinary ,Old World ,biology ,Nitrariaceae ,Ecology ,Biodiversity ,Disjunct ,biology.organism_classification ,Biological Evolution ,Article ,Chromosomes, Plant ,Nitraria ,Phylogeography ,Tracheophyta ,Biological dispersal ,DNA Barcoding, Taxonomic ,Endemism ,Phylogeny - Abstract
Many cases of intercontinental disjunct distributions of seed plants have been investigated, however few have concerned the continents of Eurasia (mainly Central Asia), Africa and Australia, especially the xerophytic lineages are lacking. Nitraria (Nitrariaceae) is just one of these xerophytic lineages. Previous Nitraria studies have hypothesized either Africa as the ancient center, with dispersals to Australia and Eurasia, or alternatively Central Asia, due to a concentration of endemism and diversity there. Our findings show eastern Central Asia, i.e. the eastern Tethys, to be the correct place of origin. Dispersal westward to Africa occurred during the late Oligocene to Pliocene, whereas dispersal to Australia from western Central Asia was young since Pliocene 2.61 Ma. Two related tetraploids are indicated to have diversified in eastern Central Asia at approximately 5.89 Ma, while the Australian tetraploid N. billardieri, is an independently derived, recent dispersal from western Central Asia.
- Published
- 2015
23. Himalayan uplift shaped biomes in Miocene temperate Asia: evidence from leguminous Caragana
- Author
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Zhang, Ming-Li, primary, Xiang, Xiao-Guo, additional, Xue, Juan-Juan, additional, Sanderson, Stewart C., additional, and Fritsch, Peter W., additional
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- 2016
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24. Microbiological profiles of sputum and gastric juice aspirates in Cystic Fibrosis patients
- Author
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Al-momani, H., primary, Perry, A., additional, Stewart, C. J., additional, Jones, R., additional, Krishnan, A., additional, Robertson, A. G., additional, Bourke, S., additional, Doe, S., additional, Cummings, S. P., additional, Anderson, A., additional, Forrest, T., additional, Griffin, S. M., additional, Brodlie, M., additional, Pearson, J., additional, and Ward, C., additional
- Published
- 2016
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25. A proteomic analysis of seeds from Bt-transgenic Brassica napus and hybrids with wild B. juncea
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Liu, Yongbo, primary, Zhang, Ying-Xue, additional, Song, Song-Quan, additional, Li, Junsheng, additional, Neal Stewart, C., additional, Wei, Wei, additional, Zhao, Yujie, additional, and Wang, Wei-Qing, additional
- Published
- 2015
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26. Young dispersal of xerophil Nitraria lineages in intercontinental disjunctions of the Old World
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Zhang, Ming-Li, primary, Temirbayeva, Kamshat, additional, Sanderson, Stewart C., additional, and Chen, Xi, additional
- Published
- 2015
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