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Abstract Alpha oscillations are associated with various psychiatric disorders, with many studies focusing on the prefrontal cortex, where transcranial alternating current stimulation (TACS) is applied in the alpha frequency band. This approach often involves selecting individualized alpha frequencies to resonate with their endogenous alpha oscillations. While strong alpha oscillations (8–13 Hz) are typically induced when the eyes are closed, they can also occur during the resting state with eyes open. However, it remains unclear whether these alpha oscillations share a common neural generation mechanism. Exploring which of these alpha oscillations is more suitable as a stable alpha peak frequency is a question of significant interest. Therefore, to systematically study this issue, we specifically collected resting-state electroencephalographic (EEG) data from the prefrontal region of 40 individuals, under both eyes-open and closed- eye conditions, with multiple follow-ups extending up to nine months. Through spectral analysis on each person’s entire dataset and averaging the results, we observed a significant positive correlation between the alpha-band power in the eyes-open and the eyes-closed states, in terms of both absolute power and relative power. Further analysis revealed that this correlation was primarily contributed by the periodic activity within the alpha band. Upon modelling the oscillatory components, we discovered distinct differences in the oscillatory characteristics-such as number of the alpha sub-oscillations between the eyes-open state and the eyes-closed state. Our study is the first to systematically explored the relationship between alpha oscillations in the prefrontal cortex in the eyes-open and eyes-closed states, identifying both shared part of the neural generation mechanism and some distinct neural mechanisms that are unique to each state.