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Cosmic ray neutron sensors (CRNS) are increasingly used to determine field-scale soil moisture (SM). Uncertainty of the CRNS-derived soil moisture strongly depends on the CRNS count rate subject to Poisson distribution. State-of-the-art CRNS signal processing averages neutron counts over many hours, thereby accounting for soil moisture temporal dynamics at the daily but not sub-daily time scale. This study demonstrates CRNS signal processing methods to improve the temporal accuracy of the signal in order to observe sub-daily changes in soil moisture and improve the signal-to-noise ratio overall. In particular, this study investigates the effectiveness of the Moving Average (MA), Median filter (MF), Savitzky–Golay (SG) filter, and Kalman filter (KF) to reduce neutron count error while ensuring that the temporal SM dynamics are as good as possible. The study uses synthetic data from four stations for measuring forest ecosystem–atmosphere relations in Africa (Gorigo) and Europe (SMEAR II (Station for Measuring Forest Ecosystem–Atmosphere Relations), Rollesbroich, and Conde) with different soil properties, land cover and climate. The results showed that smaller window sizes (12 h) for MA, MF and SG captured sharp changes closely. Longer window sizes were more beneficial in the case of moderate soil moisture variations during long time periods. For MA, MF and SG, optimal window sizes were identified and varied by count rate and climate, i.e., estimated temporal soil moisture dynamics by providing a compromise between monitoring sharp changes and reducing the effects of outliers. The optimal window for these filters and the Kalman filter always outperformed the standard procedure of simple 24-h averaging. The Kalman filter showed its highest robustness in uncertainty reduction at three different locations, and it maintained relevant sharp changes in the neutron counts without the need to identify the optimal window size. Importantly, standard corrections of CRNS before filtering improved soil moisture accuracy for all filters. We anticipate the improved signal-to-noise ratio to benefit CRNS applications such as detection of rain events at sub-daily resolution, provision of SM at the exact time of a satellite overpass, and irrigation applications. [ABSTRACT FROM AUTHOR]