11 results on '"Kurt V. Mikkelsen"'
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2. A Neural Network Approach for Property Determination of Molecular Solar Cell Candidates
- Author
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Oliver Christensen, Rasmus Dalsgaard Schlosser, Rasmus Buus Nielsen, Jes Johansen, Mads Koerstz, Jan H. Jensen, and Kurt V. Mikkelsen
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Machine Learning ,Isomerism ,Solar Energy ,Neural Networks, Computer ,Physical and Theoretical Chemistry - Abstract
The dihydroazulene/vinylheptafulvene (DHA/VHF) photocouple is a promising candidate for molecular solar heat batteries, storing and releasing energy in a closed cycle. Much work has been done on improving the energy storage capacity and the half-life of the high-energy isomer via substituent functionalization, but similarly important is keeping these improved properties in common polar solvents, along with being soluble in these, which is tied to the dipole properties. However, the number of possible derivatives makes an overview of this combinatorial space impossible both for experimental work and traditional computational chemistry. Due to the time-consuming nature of running many thousands of computations, we look to machine learning, which bears the advantage that once a model has been trained, it can be used to rapidly estimate approximate values for the given system. Applying a convolutional neural network, we show that it is possible to reach good agreement with traditional computations on a scale that allows us to rapidly screen tens of thousands of the DHA/VHF photocouple, eliminating bad candidates and allowing computational resources to be directed toward meaningful compounds.
- Published
- 2022
- Full Text
- View/download PDF
3. Electronic Predissociation in the Dichloromethane Cation CH
- Author
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Allan Christian, Petersen, Mads, Koerstz, Kurt V, Mikkelsen, and Theis I, Sølling
- Abstract
The loss of a Cl atom from metastable CH
- Published
- 2019
4. Hydration of Atmospheric Molecular Clusters II: Organic Acid-Water Clusters
- Author
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Kurt V. Mikkelsen, Merete Bilde, Jonas Elm, and Jens Vive Kildgaard
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chemistry.chemical_classification ,010304 chemical physics ,010504 meteorology & atmospheric sciences ,Autoxidation ,Inorganic chemistry ,Cyclohexene ,Sulfuric acid ,Tricarboxylic acid ,01 natural sciences ,chemistry.chemical_compound ,Dicarboxylic acid ,chemistry ,0103 physical sciences ,Cluster (physics) ,Physical and Theoretical Chemistry ,Hydrate ,0105 earth and related environmental sciences ,Organic acid - Abstract
Using computational methods, we study the gas phase hydration of three different atmospherically relevant organic acids with up to 10 water molecules. We study a dicarboxylic acid (pinic acid) and a tricarboxylic acid (3-methyl-1,2,3-butanetricarboxylic acid (mbtca)) that are both identified as products from α-pinene oxidation reactions. We also study a 2-oxohexanediperoxy acid (ohdpa) that has been identified as a product from cyclohexene autoxidation. To sample the cluster structures, we employ our recently developed systematic hydrate sampling technique and identify a total of 551 hydrate clusters. The cluster structures and thermochemical parameters (at 298.15 K and 1 atm) are obtained at the ωB97X-D/6-31++G(d,p) level of theory, and the single point energy of the clusters have been refined using a high level DLPNO-CCSD(T)/aug-cc-pVTZ calculation. We find that all three tested organic acids interact significantly more weakly with water compared to the primary nucleation precursor sulfuric acid. Even at 100% relative humidity (298.15 K and 1 atm), we find that ohdpa remains unhydrated and only the monohydrate of pinic acid and mbtca are slightly populated (4% and 2%, respectively). From the obtained molecular structures, potential implications for the ice nucleating ability of aerosol particles is discussed.
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- 2018
- Full Text
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5. Density Functional Theory Investigation on Boron Subphthalocyanine-Ferrocene Dyads
- Author
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Maria Harris Rasmussen, Kurt V. Mikkelsen, Andreas Lynge Vishart, and Freja Eilsø Storm
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Organic solar cell ,Chemistry ,Context (language use) ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Acceptor ,0104 chemical sciences ,Crystallography ,chemistry.chemical_compound ,Ferrocene ,Molecular orbital ,Density functional theory ,Physical and Theoretical Chemistry ,0210 nano-technology ,Linker ,Basis set - Abstract
Twelve dyad structures were investigated using time-dependent density functional theory (TD-DFT). The dyads are all functionalized boron subphthalocyanines (SubPcs), where the SubPc unit acts as an acceptor, and ferrocene was chosen as the donor. Both axial and peripheral functionalization was investigated using four different linker groups between the SubPc unit and the ferrocene unit. The calculated molecular orbitals were compared for the 12 structures and discussed in the context of possible electron transport through the system and the use in organic photovoltaics. Optical properties of the 12 structures were investigated using a TD-DFT approach with the generalized gradient approximation type exchange correlation functional BP86 and using the Pople style basis set 6-31++G(d,p). Both changes in absorption properties by changing the linker group and changes in absorption properties when changing the position of the linker group were considered.
- Published
- 2018
6. Density Functional Theory Study of the Solvent Effects on Systematically Substituted Dihydroazulene/Vinylheptafulvene Systems: Improving the Capability of Molecular Energy Storage
- Author
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Kurt V. Mikkelsen, Mia Harring Hansen, Nicolai Ree, and Anders S. Gertsen
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Absorption spectroscopy ,010405 organic chemistry ,010402 general chemistry ,01 natural sciences ,Toluene ,Energy storage ,0104 chemical sciences ,Solvent ,Hexane ,chemistry.chemical_compound ,chemistry ,Computational chemistry ,Density functional theory ,Physical and Theoretical Chemistry ,Solvent effects ,Acetonitrile - Abstract
Former work has improved the energy storage capacity of the dihydroazulene/vinyl- heptafulvene photo-/thermoswitch by substitution with NH 2 and NO 2 in vacuum. This work extends the former by investigating the solvent effects systematically using cyclo- hexane, toluene, dichloromethane, ethanol, and acetonitrile and comparing them with the inclusion of vacuum calculations. The investigation includes more than 8000 cal- culations using density functional theory for comparison of energy storage capacities, activation energies for the thermal conversion of vinylheptafulvene to dihydroazulene, and UV-Vis absorption spectra. We thereby establish design and solvent guidelines in order to obtain an optimal performance of the dihydroazulene/vinylheptafulvene system for use in a solar energy harvesting and storing device.
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- 2017
7. Theoretical Investigation of Substituent Effects on the Dihydroazulene/Vinylheptafulvene Photoswitch: Increasing the Energy Storage Capacity
- Author
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Jonas Elm, Benjamin N. Frandsen, Kurt V. Mikkelsen, Henrik G. Kjaergaard, Freja Eilsø Storm, Stine T. Olsen, Mia Harring Hansen, Anders B. Skov, Mogens Brøndsted Nielsen, and Aske Nørskov Gejl
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Photoswitch ,010405 organic chemistry ,Chemistry ,Substituent ,Activation energy ,Electronic structure ,010402 general chemistry ,Photochemistry ,01 natural sciences ,Energy storage ,0104 chemical sciences ,chemistry.chemical_compound ,Computational chemistry ,Polar effect ,Density functional theory ,Physical and Theoretical Chemistry - Abstract
We have investigated the effects of substituents on the properties of the dihydroazulene/vinylheptafulvene photoswitch. The focus is on the changes of the thermochemical properties by placing electron withdrawing and donating groups on the monocyano and dicyano structures of the parent dihydroazulene and vinylheptafulvene compounds. We wish to increase the energy storage capacity, that is, the energy difference between the dihydroazulene and vinylheptafulvene isomers, of the photoswitch by computational molecular design and have performed over 9000 electronic structure calculations using density functional theory. Based on these calculations, we obtain design rules for how to increase the energy storage capacity of the photoswitch. Furthermore, we have investigated how the activation energy for the thermally induced vinylheptafulvene to dihydroazulene conversion depends on the substitution pattern, and based on these results, we have outlined molecular design considerations for obtaining new desired target structures exhibiting long energy storage times. Selected candidate systems have also been investigated in terms of optical properties to elucidate how sensitive the absorption maxima are to the functionalizations.
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- 2016
8. Computational methodology study of the optical and thermochemical properties of a molecular photoswitch
- Author
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Mia Harring Hansen, Aske Nørskov Gejl, Henrik G. Kjaergaard, Mogens Brøndsted Nielsen, Jens Rix Nikolajsen, Stine T. Olsen, Jonas Elm, Kurt V. Mikkelsen, Anne S. Hansen, and Freja Eilsø Storm
- Subjects
Basis (linear algebra) ,Photoswitch ,Chemistry ,Computational chemistry ,Thermochemistry ,Polar effect ,Physical and Theoretical Chemistry - Abstract
We assess how the utilization of different DFT functionals for obtaining the equilibrium geometries and vibrational frequencies affect the description of the thermochemistry and subsequent calculation of the optical properties of a dihydroazulene-vinylheptafulvene photoswitch. The assessment covers nine popular DFT functionals (BLYP, B3LYP, CAM-B3LYP, M06-L, M06, M06-2X, PBE, PBE0, and ωB97X-D) in conjugation with five different Pople style basis sets (6-31+G(d), 6-31++G(d,p), 6-311+G(d), 6-311++G(d,p), and 6-311++G(3df,3pd)). It is identified that only CAM-B3LYP, M06-2X, and PBE0 are able to quantitatively describe the correct trends in the thermochemical properties. The subsequent calculation of the optical properties using the CAM-B3LYP functional shows that there is little difference in whether the CAM-B3LYP, M06-2X, or PBE0 functionals have been used to calculate the equilibrium geometries. Utilizing the identified functionals, we investigate how the number of electron withdrawing cyano substituents influence the thermochemistry and optical properties of the molecular photoswitch.
- Published
- 2015
9. Molecular interaction of pinic acid with sulfuric acid: exploring the thermodynamic landscape of cluster growth
- Author
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Jonas Elm, Theo Kurtén, Kurt V. Mikkelsen, and Merete Bilde
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NANOAEROSOL CLUSTERS ,ENERGIES ,Inorganic chemistry ,ALPHA-PINENE ,OZONOLYSIS ,010402 general chemistry ,01 natural sciences ,Acid molecule ,DENSITY-FUNCTIONAL THEORY ,symbols.namesake ,chemistry.chemical_compound ,Computational chemistry ,0103 physical sciences ,PARTICLE FORMATION ,Cluster (physics) ,Molecule ,ORGANIC-AEROSOL ,Physical and Theoretical Chemistry ,Molecular interactions ,010304 chemical physics ,Single cluster ,Chemistry ,DYNAMICS SIMULATIONS ,ATMOSPHERIC NUCLEATION PRECURSORS ,Sulfuric acid ,0104 chemical sciences ,Gibbs free energy ,symbols ,AEROSOL NUCLEATION - Abstract
We investigate the molecular interactions between the semivolatile alpha-pinene oxidation product pinic acid and sulfuric acid using computational methods. The stepwise Gibbs free energies of formation have been calculated utilizing the M06-2X functional, and the stability of the clusters is evaluated from the corresponding Delta G values. The first two additions of sulfuric acid to pinic acid are found to be favorable with Delta G values of -9.06 and -10.41 kcal/mol. Addition of a third sulfuric acid molecule is less favorable and leads to a structural rearrangement forming a bridged sulfuric acid-pinic acid cluster. The involvement of more than one pinic acid molecule in a single cluster is observed to lead to the formation of favorable (pinic acid)(2)(H2SO4) and (pinic acid)(2)(H2SO4)(2) clusters. The identified most favorable growth paths starting from a single pinic acid molecule lead to closed structures without the further possibility for attachment of either sulfuric acid or pinic acid. This suggests that pinic acid cannot be a key species in the first steps in nucleation, but the favorable interactions between sulfuric acid and pinic acid imply that pinic acid can contribute to the subsequent growth of an existing nucleus by condensation.
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- 2014
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10. QM/MM-MD simulations of conjugated polyelectrolytes: a study of luminescent conjugated oligothiophenes for use as biophysical probes
- Author
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Patrick Norman, Mathieu Linares, Jonas Sjöqvist, and Kurt V. Mikkelsen
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Luminescence ,Chemistry ,Polymers ,Water ,Thiophenes ,Dihedral angle ,Conjugated system ,Molecular Dynamics Simulation ,Fluorescence ,Conjugated Polyelectrolytes ,Biophysical Phenomena ,QM/MM ,Molecular dynamics ,Electrolytes ,Spectrometry, Fluorescence ,Computational chemistry ,Theoretical chemistry ,Quantum Theory ,Physical and Theoretical Chemistry ,Fluorescent Dyes - Abstract
A methodological development is reported for the study of luminescence properties of conjugated polyelectrolytes, encompassing systems in which dihedral rotational barriers are easily overcome at room temperature. The components of the model include (i) a molecular mechanics (MM) force field description of the solvent in its electronic ground state as well as the chromophore in its electronic ground and excited states, (ii) a conformational sampling by means of classical molecular dynamics (MD) in the respective electronic states, and (iii) spectral response calculations by means of the quantum mechanics/molecular mechanics QM/MM approach. A detailed analysis of the combined polarization effects of the ionic moiety and the polar water solvent is presented. At an increased computational cost of 30% compared to a calculation excluding the solvent, the error in the transition wavelength of the dominant absorption band is kept as small as 1 nm as compared to the high-quality benchmark result, based largely on a QM description of the solvent. At a reduced computational cost the error of the same quantity is kept as small as 6 nm, with the cost reduction being the result of an effective description of the effects of the solvent by means of replacing the carboxylate ions with neutral hydrogens. In absorption spectroscopy, the obtained best theoretical results are in excellent agreement with the experimental benchmark measurement, regarding excitation energies as well as band intensities and profiles. In fluorescence spectroscopy, the experimental spectrum shows a vibrational progression that is not addressed by theory, but the theoretical band position is in excellent agreement with experiment, with a highly accurate description of the Stokes shift as a result.
- Published
- 2014
11. Influence of nucleation precursors on the reaction kinetics of methanol with the OH radical
- Author
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Kurt V. Mikkelsen, Jonas Elm, and Merete Bilde
- Subjects
Chemical kinetics ,Reaction rate ,chemistry.chemical_compound ,Reaction mechanism ,chemistry ,Inorganic chemistry ,Kinetics ,Nucleation ,Sulfuric acid ,Methanol ,Physical and Theoretical Chemistry ,Photochemistry ,Hydrogen atom abstraction - Abstract
The mechanism and kinetics of the reaction of methanol with the OH radical in the absence and presence of common atmospheric nucleation precursors (H O, NH, and HSO) have been investigated using different computational methods. The statistical Gibb's free energy of formation has been calculated using M06-2X/6-311++G(3df,3pd) in order to assess cluster stability. Methanol is found to have an unfavorable interaction with water and ammonia but form stable complexes with sulfuric acid. The reaction kinetics with the OH radical and methanol with or without the presence of nucleation precursors has been studied using a CCSD(T)-F12a/VDZ-F12/ /BH&HLYP/aug-cc-pVTZâ̂¥Eckart methodology, and it is found that the presence of water is unlikely to change the overall reaction rate and mechanism of hydrogen abstraction from methanol. Ammonia is able to both enhance the reaction rate and change the reaction mechanism, but due to a very weak interaction with methanol, this process is unlikely to occur under atmospheric conditions. Sulfuric acid is, in contrast, found to be able to act as a stabilizing factor for methanol and is able to change the reaction mechanism. These findings show the first indications that nucleation precursors such as ammonia and sulfuric acid are able to alter the reaction mechanism of an atmospherically relevant organic compound.
- Published
- 2013
- Full Text
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