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The major tasks of the Baltic Sea Experiment (BALTEX) are to simulate the water and energy cycles of the Baltic Sea catchment and to identify important processes, which are relevant to the climate in the Baltic region. A fully coupled regional climate model system for the Baltic Sea region, called BALTIMOS, was developed in the framework of the German climate research program DEKLIM by linking existing model components for the atmosphere, for the ocean including sea ice, and for hydrology. With this system, it is possible to model the complete water and energy cycles for the Baltic Sea catchment for today's climate, as well as for the future with climate scenarios. The emphasis in this paper is given to the description of the modelling system and on the comparison of the results of the fully coupled BALTIMOS system against the results of the uncoupled atmospheric component REMO for today's climate. Both simulations are driven at the atmospheric lateral boundaries with ECMWF analysis data from the European Centre for Medium Range Weather Forecast (ECMWF) for 5 years each. In the uncoupled run, the sea surface temperature (SST) and ice surface temperature (IST) analysed by ECMWF are prescribed, while in the coupled run, SST and IST are provided by the ocean/sea ice model BSIOM. Several analysed parameters are very similar for the land part of the Baltic Sea catchment, while there are differences especially for surface and near-surface temperatures for the fraction of the Baltic Sea itself that indicate further research efforts. As no corrections for the modelled air-sea fluxes are applied for the coupled model system, it is a good result that no drift of the coupled model system is visible in the 5-year integration. The present paper gives an overview about the development of the coupled model system and shows results from first integrations of the system. [ABSTRACT FROM AUTHOR]