1. A multiplex real-time RT-PCR for simultaneous detection of four most common avian respiratory viruses
- Author
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Abdeljelil Ghram, Rim Aouini, Boutheina Marnissi, Issam Hmila, Nacira Laamiri, Laboratoire d’Epidémiologie et de Microbiologie Vétérinaire (LR11IPT03), Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Université de Tunis El Manar (UTM), Université de Carthage - University of Carthage, This work was supported by the Institut Pasteur de Tunis (LR11IPT03) (LEMV project), the Ministry of Higher Education and Scientific Research (Tunisia)., and All authors wish to thank Prof Jaouher Ben Ali, University of Sousse and University of Tunis, Tunisia, for his helps to compute and analyze ROC curves.
- Subjects
0301 basic medicine ,MESH: Respiratory Tract Infections/veterinary ,medicine.disease_cause ,Cross-reactivity ,MESH: Multiplex Polymerase Chain Reaction/veterinary ,MESH: Bird Diseases/virology ,MESH: Influenza A virus/isolation & purification ,Herpesvirus 1, Gallid ,Limit of Detection ,Multiplex ,MESH: Animals ,MESH: Newcastle disease virus/genetics ,Respiratory Tract Infections ,AIV ,Avian respiratory viruses ,3. Good health ,MESH: Reproducibility of Results ,Real-time polymerase chain reaction ,MESH: Herpesvirus 1, Gallid/isolation & purification ,Influenza A virus ,MESH: Birds ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,MESH: Infectious bronchitis virus/genetics ,Infectious bronchitis virus ,Newcastle disease virus ,MESH: Limit of Detection ,Multiplex NDV ,Biology ,MESH: Multiplex Polymerase Chain Reaction/methods ,MESH: Bird Diseases/diagnosis ,Newcastle disease ,Sensitivity and Specificity ,Virus ,IBV ,Birds ,03 medical and health sciences ,Virology ,medicine ,Animals ,MESH: Respiratory Tract Infections/virology ,ILTV ,MESH: Influenza A virus/genetics ,Detection limit ,Reproducibility ,[SDV.BA.MVSA]Life Sciences [q-bio]/Animal biology/Veterinary medicine and animal Health ,Receiver operating characteristic ,MESH: Infectious bronchitis virus/isolation & purification ,Bird Diseases ,MESH: Respiratory Tract Infections/diagnosis ,MESH: Herpesvirus 1, Gallid/genetics ,Reproducibility of Results ,biology.organism_classification ,MESH: Sensitivity and Specificity ,Real-time RT-PCR ,030104 developmental biology ,MESH: Newcastle disease virus/isolation & purification ,Multiplex Polymerase Chain Reaction - Abstract
International audience; A one-step multiplex real-time reverse transcription-PCR (rRT-PCR) assay was developed for simultaneous detection and quantification of four avian respiratory viruses: avian influenza virus (AIV), infectious bronchitis virus (IBV), Newcastle disease virus (NDV) and infectious laryngotracheitis virus (ILTV). In comparison with the singleplex rRT-PCR, the specificity, the sensitivity and the reproducibility of the new assay were evaluated and validated using 70 clinical samples. The optimal cutoff point, the corresponding limit of quantification (LoQ) and the limit of detection (LoD) were statistical established based on receiver operating characteristic (ROC) curve analysis. The results showed that the multiplex assay presents higher sensitivity and specificity. Correlation coefficients (R2) and amplification efficiencies (E) of all singleplex and multiplex rRT-PCR reactions are within the acceptable range. The 95% LoDs of multiplex assay were in the range [3–19] copies genomic/ µl, and its corresponding cutoff cycles were in the range [34.16–36.59]. No competitive inhibition for the detection of the four targets and no specific amplification or cross reactivity with other tested viruses was observed. Excellent results were attained in the inter-assay and intra-assay reproducibility evaluation. All identified samples by the multiplex rRT-PCR assay proved to be 100% concordant with the results of the singleplex assays. The results achieved showed that the multiplex assay is very suitable as a routine laboratory test for rapid and specific detection and quantification of co-infections in field samples.
- Published
- 2017
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