1. Establishment of multiple PCR assay for detecting infectious spleen and kidney necrosis virus, Siniperca chuatsi ranairidovirus and Siniperca chuatsi rhabdovirus.
- Author
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LIANG Hongru, MA Saiya, FU Xiaozhe, LIN Qiang, LIU Lihui, NIU Yinjie, HUANG Zhibin, LIN Li, and LI Ningqiu
- Abstract
[Objective] This study established a method for simultaneous PCR detection of infectious spleen and kidney necrosis virus (ISKNV), Siniperca chuatsi ranairidoviru (SCRIV) and Siniperca chuatsi rhabdovirus (SCRV). [Method] Three pairs of specific primers were designed based on MCP gene in ISKNV, MCP gene in SCRIV and N gene in SCRV, and annealing temperature and primer dosage in PCR amplification reaction were optimized. A multiplex PCR was established to detect ISKNV (550 bp), SCRIV (400 bp) and SCRV (780 bp) simultaneously. The sensitivity and specificity of the method were verified by comparing with single PCR using 22 suspected infected ISKNV, SCRIV and SCRV samples. [Result] The triple PCR method was established successfully and it was able to detect ISKNV, SCRIV and SCRV simultaneously with good specificity and no amplification of common fish viruses such as IPNV, GCRV, KHV, SGIV, NNV, TiLV and SVCV. The method had good sensitivity with lower detection limit of 1 X 10
-1 ng/µuL for the three viral DNAs. The testing of 22 clinical samples showed that the established method and single PCR methods were 100% identical. The positive rates of ISKNV, SCRIV, and SCRV were 27%, 41% and 9%. The positive rate of mixed infection of ISKNV and SCRIV was both 9%, while the positive rate of mixed infection of ISKNV, SCRIV and SCRV was 0. [Conclusion] The established multiple PCR detection method had high specificity and sensitivity. Thus, it can be used for rapid identification and diagnosis of the three viruses. [ABSTRACT FROM AUTHOR]- Published
- 2021
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