1. Preliminary analysis on coat protein gene of Citrus tristeza virus collected from citrus production regions in South Jiangxi province.
- Author
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LIU Zhi-fang, YI Long, LU Zhan-jun, and GAO Yu-xia
- Abstract
[Objective] The present study was conducted to clone coat protein gene of citrus tristeza virus (CTY) collected from Gannan navel oranges (south of Jiangxi province) and analyze its sequence genetic information, in order to lay the foundation for preventing CTY from spreading by using mild strains cross protection method. [Method] The CP gene of CTY sample was amplified with RT-PCR and sequenced. The recombination and nucleotide sequence composition of CP gene in different CTY samples were detected by using software. The nucleotide genetic distance among collected CTY samples and 10 completed whole genome sequencing CTY isolates were calculated, and followed by sequence homology comparison and phylogenetic tree construction. [Result] Amongst 214 collected citrus leaf samples, 78 samples were infected with CTY, and the disease incidence was 36.4%. Out of 78 CTY samples, only one sample was found to be has genetic recombination. The full-length sequence of CP gene in 78 CTY samples was 672 bp in length, and there were no any base deletion and insertion. The average GC and AT (U) compositions of CP gene were 52.8% and 47.2%, respectively. The CP nucleotide genetic distance amongst 78 CTY samples were 0-0.072, and those between 78 samples and 10 known isolates were 0-0.106, respectively. The nucleotide and its deduced amino acid of CP gene amongst 78 samples shared 89.1%-100.0% and 92.3%-100.0% of homology, and they shared 76.5%-98.9% and 73.6%-99.5% of homologies with 10 known CTY isolates, respectively. The phylogenetic tree analysis results showed that, 78 samples and 10 known CTY isolates could be divided into four groups. The first group (I) contained 49 collected CTY samples and 7 known isolates (6 virulent strains and 1 mild strain). The second group(II) contained 21 collected samples and 2 known isolates Qaha and Mexico-ctv. The third group (III) only contained sample CRJ14 which came from Ruijin region. The fourth group (IV) contained one known isolate HA16-5 and those collected samples from Jiangkou and Ningdu regions of Jiangxi province. [Conclusion] The CP gene of CTY isolates from Gannan navel oranges is highly conserved, and its sequence has variation at a certain extent. There are higher and complex relationship amongst each collected isolate, and most of them are associated with virulent and stem pitting isolates. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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